Result of FASTA (omim) for pF1KB9483
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9483, 857 aa
  1>>>pF1KB9483 857 - 857 aa - 857 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6604+/-0.000505; mu= 5.9567+/- 0.032
 mean_var=244.1507+/-48.869, 0's: 0 Z-trim(115.0): 29  B-trim: 0 in 0/56
 Lambda= 0.082081
 statistics sampled from 25202 (25230) to 25202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.296), width:  16
 Scan time: 11.010

The best scores are:                                      opt bits E(85289)
NP_036218 (OMIM: 604888) general transcription fac ( 886) 2809 347.1 2.1e-94
XP_005247022 (OMIM: 604888) PREDICTED: general tra ( 494) 2798 345.6 3.4e-94
NP_001193703 (OMIM: 604888) general transcription  ( 413) 2620 324.4 6.7e-88


>>NP_036218 (OMIM: 604888) general transcription factor   (886 aa)
 initn: 5574 init1: 2800 opt: 2809  Z-score: 1815.8  bits: 347.1 E(85289): 2.1e-94
Smith-Waterman score: 5520; 96.7% identity (96.7% similar) in 886 aa overlap (1-857:1-886)

               10        20        30        40        50        60
pF1KB9 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
              370       380       390       400       410       420

              430                                    440       450 
pF1KB9 GDLYLDVAEAFLDV-----------------------------ECLKALGYMERAAESYG
       ::::::::::::::                             :::::::::::::::::
NP_036 GDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYG
              430       440       450       460       470       480

             460       470       480       490       500       510 
pF1KB9 KVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRS
              490       500       510       520       530       540

             520       530       540       550       560       570 
pF1KB9 TLLFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TLLFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSN
              550       560       570       580       590       600

             580       590       600       610       620       630 
pF1KB9 DQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYD
              610       620       630       640       650       660

             640       650       660       670       680       690 
pF1KB9 DRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHR
              670       680       690       700       710       720

             700       710       720       730       740       750 
pF1KB9 FCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 FCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHM
              730       740       750       760       770       780

             760       770       780       790       800       810 
pF1KB9 ASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL
              790       800       810       820       830       840

             820       830       840       850       
pF1KB9 PPLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
              850       860       870       880      

>>XP_005247022 (OMIM: 604888) PREDICTED: general transcr  (494 aa)
 initn: 3049 init1: 2788 opt: 2798  Z-score: 1812.0  bits: 345.6 E(85289): 3.4e-94
Smith-Waterman score: 2995; 94.1% identity (94.1% similar) in 494 aa overlap (393-857:1-494)

            370       380       390       400       410       420  
pF1KB9 EEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGD
                                     ::::::::::::::::::::::::::::::
XP_005                               MVCLVHLNILEPLNPLLTTLVEQNPEDMGD
                                             10        20        30

            430                                    440       450   
pF1KB9 LYLDVAEAFLDV-----------------------------ECLKALGYMERAAESYGKV
       ::::::::::::                             :::::::::::::::::::
XP_005 LYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYGKV
               40        50        60        70        80        90

           460       470       480       490       500       510   
pF1KB9 VDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRSTL
              100       110       120       130       140       150

           520       530       540       550       560       570   
pF1KB9 LFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSNDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSNDQ
              160       170       180       190       200       210

           580       590       600       610       620       630   
pF1KB9 ESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYDDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYDDR
              220       230       240       250       260       270

           640       650       660       670       680       690   
pF1KB9 QKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHRFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHRFC
              280       290       300       310       320       330

           700       710       720       730       740       750   
pF1KB9 LRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHMAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHMAS
              340       350       360       370       380       390

           760       770       780       790       800       810   
pF1KB9 QKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALELPP
              400       410       420       430       440       450

           820       830       840       850       
pF1KB9 LVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
       ::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
              460       470       480       490    

>>NP_001193703 (OMIM: 604888) general transcription fact  (413 aa)
 initn: 2620 init1: 2620 opt: 2620  Z-score: 1699.1  bits: 324.4 E(85289): 6.7e-88
Smith-Waterman score: 2620; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KB9 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
       ::::::::::::::::::::::::::::::::::::::::::::::              
NP_001 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNVCNKICT       
              370       380       390       400       410          

              430       440       450       460       470       480
pF1KB9 GDLYLDVAEAFLDVECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKA




857 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:50:08 2016 done: Thu Nov  3 23:50:10 2016
 Total Scan time: 11.010 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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