Result of FASTA (omim) for pF1KB9475
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9475, 343 aa
  1>>>pF1KB9475 343 - 343 aa - 343 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9063+/-0.000325; mu= 14.3880+/- 0.020
 mean_var=95.0832+/-18.901, 0's: 0 Z-trim(117.0): 20  B-trim: 335 in 1/57
 Lambda= 0.131529
 statistics sampled from 28680 (28700) to 28680 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.337), width:  16
 Scan time:  7.550

The best scores are:                                      opt bits E(85289)
XP_016865067 (OMIM: 609433) PREDICTED: BRCA1-A com ( 349) 2242 435.4 8.6e-122
XP_005265993 (OMIM: 609433) PREDICTED: BRCA1-A com ( 349) 2242 435.4 8.6e-122
XP_016865068 (OMIM: 609433) PREDICTED: BRCA1-A com ( 349) 2242 435.4 8.6e-122
XP_016865066 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
XP_005265990 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
XP_005265989 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
XP_016865065 (OMIM: 609433) PREDICTED: BRCA1-A com ( 438) 2039 397.0 4.1e-110
NP_001304890 (OMIM: 609433) BRCA1-A complex subuni ( 553) 2037 396.7 6.3e-110
XP_005265992 (OMIM: 609433) PREDICTED: BRCA1-A com ( 416) 2032 395.6 9.8e-110
XP_006714937 (OMIM: 609433) PREDICTED: BRCA1-A com ( 416) 2032 395.6 9.8e-110
XP_005265991 (OMIM: 609433) PREDICTED: BRCA1-A com ( 416) 2032 395.6 9.8e-110
XP_016865064 (OMIM: 609433) PREDICTED: BRCA1-A com ( 620) 2032 395.8 1.3e-109
XP_016865063 (OMIM: 609433) PREDICTED: BRCA1-A com ( 641) 2032 395.8 1.4e-109
NP_001186226 (OMIM: 609433) BRCA1-A complex subuni ( 719) 2032 395.8 1.5e-109
NP_001186227 (OMIM: 609433) BRCA1-A complex subuni ( 719) 2032 395.8 1.5e-109
XP_005265987 (OMIM: 609433) PREDICTED: BRCA1-A com ( 719) 2032 395.8 1.5e-109
NP_057374 (OMIM: 609433) BRCA1-A complex subunit R ( 719) 2032 395.8 1.5e-109
XP_006714934 (OMIM: 609433) PREDICTED: BRCA1-A com ( 719) 2032 395.8 1.5e-109
XP_011532872 (OMIM: 609433) PREDICTED: BRCA1-A com ( 537)  853 172.0 2.7e-42
XP_011532870 (OMIM: 609433) PREDICTED: BRCA1-A com ( 572)  853 172.0 2.8e-42


>>XP_016865067 (OMIM: 609433) PREDICTED: BRCA1-A complex  (349 aa)
 initn: 2252 init1: 1437 opt: 2242  Z-score: 2307.5  bits: 435.4 E(85289): 8.6e-122
Smith-Waterman score: 2242; 98.3% identity (98.3% similar) in 349 aa overlap (1-343:1-349)

               10        20        30        40        50        60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
              130       140       150       160       170       180

              190       200       210             220       230    
pF1KB9 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGKWQQ
       ::::::::::::::::::::::::::::::::::::::      ::::::::::::::::
XP_016 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGKWQQ
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KB9 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
              250       260       270       280       290       300

          300       310       320       330       340   
pF1KB9 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
              310       320       330       340         

>>XP_005265993 (OMIM: 609433) PREDICTED: BRCA1-A complex  (349 aa)
 initn: 2252 init1: 1437 opt: 2242  Z-score: 2307.5  bits: 435.4 E(85289): 8.6e-122
Smith-Waterman score: 2242; 98.3% identity (98.3% similar) in 349 aa overlap (1-343:1-349)

               10        20        30        40        50        60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
              130       140       150       160       170       180

              190       200       210             220       230    
pF1KB9 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGKWQQ
       ::::::::::::::::::::::::::::::::::::::      ::::::::::::::::
XP_005 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGKWQQ
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KB9 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
              250       260       270       280       290       300

          300       310       320       330       340   
pF1KB9 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
              310       320       330       340         

>>XP_016865068 (OMIM: 609433) PREDICTED: BRCA1-A complex  (349 aa)
 initn: 2252 init1: 1437 opt: 2242  Z-score: 2307.5  bits: 435.4 E(85289): 8.6e-122
Smith-Waterman score: 2242; 98.3% identity (98.3% similar) in 349 aa overlap (1-343:1-349)

               10        20        30        40        50        60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTA
              130       140       150       160       170       180

              190       200       210             220       230    
pF1KB9 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGKWQQ
       ::::::::::::::::::::::::::::::::::::::      ::::::::::::::::
XP_016 AQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGKWQQ
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KB9 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFT
              250       260       270       280       290       300

          300       310       320       330       340   
pF1KB9 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
              310       320       330       340         

>>XP_016865066 (OMIM: 609433) PREDICTED: BRCA1-A complex  (438 aa)
 initn: 2049 init1: 1234 opt: 2039  Z-score: 2098.0  bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)

                  10        20        30        40        50       
pF1KB9    MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
                                     ::.:::::::::::::::::::::::::::
XP_016 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
         90       100       110       120       130       140      

        60        70        80        90       100       110       
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
        150       160       170       180       190       200      

       120       130       140       150       160       170       
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
        210       220       230       240       250       260      

       180       190       200       210             220       230 
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
       :::::::::::::::::::::::::::::::::::::::::      :::::::::::::
XP_016 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
        270       280       290       300       310       320      

             240       250       260       270       280       290 
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
        330       340       350       360       370       380      

             300       310       320       330       340   
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
        390       400       410       420       430        

>>XP_005265990 (OMIM: 609433) PREDICTED: BRCA1-A complex  (438 aa)
 initn: 2049 init1: 1234 opt: 2039  Z-score: 2098.0  bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)

                  10        20        30        40        50       
pF1KB9    MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
                                     ::.:::::::::::::::::::::::::::
XP_005 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
         90       100       110       120       130       140      

        60        70        80        90       100       110       
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
        150       160       170       180       190       200      

       120       130       140       150       160       170       
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
        210       220       230       240       250       260      

       180       190       200       210             220       230 
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
       :::::::::::::::::::::::::::::::::::::::::      :::::::::::::
XP_005 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
        270       280       290       300       310       320      

             240       250       260       270       280       290 
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
        330       340       350       360       370       380      

             300       310       320       330       340   
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
        390       400       410       420       430        

>>XP_005265989 (OMIM: 609433) PREDICTED: BRCA1-A complex  (438 aa)
 initn: 2049 init1: 1234 opt: 2039  Z-score: 2098.0  bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)

                  10        20        30        40        50       
pF1KB9    MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
                                     ::.:::::::::::::::::::::::::::
XP_005 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
         90       100       110       120       130       140      

        60        70        80        90       100       110       
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
        150       160       170       180       190       200      

       120       130       140       150       160       170       
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
        210       220       230       240       250       260      

       180       190       200       210             220       230 
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
       :::::::::::::::::::::::::::::::::::::::::      :::::::::::::
XP_005 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
        270       280       290       300       310       320      

             240       250       260       270       280       290 
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
        330       340       350       360       370       380      

             300       310       320       330       340   
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
        390       400       410       420       430        

>>XP_016865065 (OMIM: 609433) PREDICTED: BRCA1-A complex  (438 aa)
 initn: 2049 init1: 1234 opt: 2039  Z-score: 2098.0  bits: 397.0 E(85289): 4.1e-110
Smith-Waterman score: 2039; 97.8% identity (98.1% similar) in 322 aa overlap (28-343:117-438)

                  10        20        30        40        50       
pF1KB9    MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTS
                                     ::.:::::::::::::::::::::::::::
XP_016 LALKMSEQEAREVNSQEEEEEELLRKAIAESLNSSQGIVEETSEEGNSVPASQSVAALTS
         90       100       110       120       130       140      

        60        70        80        90       100       110       
pF1KB9 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKED
        150       160       170       180       190       200      

       120       130       140       150       160       170       
pF1KB9 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKTKSDS
        210       220       230       240       250       260      

       180       190       200       210             220       230 
pF1KB9 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSGRACSTVEGK
       :::::::::::::::::::::::::::::::::::::::::      :::::::::::::
XP_016 GTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSGRACSTVEGK
        270       280       290       300       310       320      

             240       250       260       270       280       290 
pF1KB9 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQS
        330       340       350       360       370       380      

             300       310       320       330       340   
pF1KB9 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF
        390       400       410       420       430        

>>NP_001304890 (OMIM: 609433) BRCA1-A complex subunit RA  (553 aa)
 initn: 2039 init1: 1224 opt: 2037  Z-score: 2094.5  bits: 396.7 E(85289): 6.3e-110
Smith-Waterman score: 2037; 92.2% identity (95.1% similar) in 344 aa overlap (6-343:211-553)

                                        10        20        30     
pF1KB9                          MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGI
                                     ....  .::  .   .. :  :. .:::::
NP_001 EPWDHTEKTEEEPVSGSSGSWDQSSQPVFENVNVKSFDRCTGHSAEHTQC-GKPQSSQGI
              190       200       210       220       230          

          40        50        60        70        80        90     
pF1KB9 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG
     240       250       260       270       280       290         

         100       110       120       130       140       150     
pF1KB9 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN
     300       310       320       330       340       350         

         160       170       180       190       200       210     
pF1KB9 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL
     360       370       380       390       400       410         

               220       230       240       250       260         
pF1KB9 AKA------EGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE
       :::      :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKADQGDGPEGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE
     420       430       440       450       460       470         

     270       280       290       300       310       320         
pF1KB9 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS
     480       490       500       510       520       530         

     330       340   
pF1KB9 RTRTKAGRGRRRKF
       ::::::::::::::
NP_001 RTRTKAGRGRRRKF
     540       550   

>>XP_005265992 (OMIM: 609433) PREDICTED: BRCA1-A complex  (416 aa)
 initn: 2259 init1: 1224 opt: 2032  Z-score: 2091.1  bits: 395.6 E(85289): 9.8e-110
Smith-Waterman score: 2032; 95.2% identity (97.0% similar) in 331 aa overlap (19-343:87-416)

                           10        20        30        40        
pF1KB9             MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA
                                     ....: :  . .::::::::::::::::::
XP_005 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA
         60        70        80        90        100       110     

       50        60        70        80        90       100        
pF1KB9 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
         120       130       140       150       160       170     

      110       120       130       140       150       160        
pF1KB9 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
         180       190       200       210       220       230     

      170       180       190       200       210             220  
pF1KB9 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::      ::::
XP_005 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG
         240       250       260       270       280       290     

            230       240       250       260       270       280  
pF1KB9 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
         300       310       320       330       340       350     

            290       300       310       320       330       340  
pF1KB9 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
         360       370       380       390       400       410     

        
pF1KB9 F
       :
XP_005 F
        

>--
 initn: 278 init1: 234 opt: 234  Z-score: 247.2  bits: 54.4 E(85289): 5e-07
Smith-Waterman score: 234; 73.9% identity (89.1% similar) in 46 aa overlap (1-46:1-46)

               10        20        30        40        50        60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
       ::::::::::::::::::::::::::::::.  :  :..::... .              
XP_005 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKNECGQGEQASEKNECISEDMGDEDKEERQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
                                                                   
XP_005 SRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQSVA
               70        80        90       100       110       120

>>XP_006714937 (OMIM: 609433) PREDICTED: BRCA1-A complex  (416 aa)
 initn: 2259 init1: 1224 opt: 2032  Z-score: 2091.1  bits: 395.6 E(85289): 9.8e-110
Smith-Waterman score: 2032; 95.2% identity (97.0% similar) in 331 aa overlap (19-343:87-416)

                           10        20        30        40        
pF1KB9             MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA
                                     ....: :  . .::::::::::::::::::
XP_006 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA
         60        70        80        90        100       110     

       50        60        70        80        90       100        
pF1KB9 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
         120       130       140       150       160       170     

      110       120       130       140       150       160        
pF1KB9 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
         180       190       200       210       220       230     

      170       180       190       200       210             220  
pF1KB9 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::      ::::
XP_006 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG
         240       250       260       270       280       290     

            230       240       250       260       270       280  
pF1KB9 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
         300       310       320       330       340       350     

            290       300       310       320       330       340  
pF1KB9 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
         360       370       380       390       400       410     

        
pF1KB9 F
       :
XP_006 F
        

>--
 initn: 278 init1: 234 opt: 234  Z-score: 247.2  bits: 54.4 E(85289): 5e-07
Smith-Waterman score: 234; 73.9% identity (89.1% similar) in 46 aa overlap (1-46:1-46)

               10        20        30        40        50        60
pF1KB9 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPASQSVAALTSKRS
       ::::::::::::::::::::::::::::::.  :  :..::... .              
XP_006 MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKNECGQGEQASEKNECISEDMGDEDKEERQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEK
                                                                   
XP_006 SRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQSVA
               70        80        90       100       110       120




343 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:44:24 2016 done: Thu Nov  3 23:44:25 2016
 Total Scan time:  7.550 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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