Result of FASTA (omim) for pF1KB9414
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9414, 713 aa
  1>>>pF1KB9414 713 - 713 aa - 713 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5488+/-0.00036; mu= 2.8918+/- 0.023
 mean_var=269.8781+/-56.254, 0's: 0 Z-trim(122.4): 12  B-trim: 524 in 1/55
 Lambda= 0.078071
 statistics sampled from 40410 (40423) to 40410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.474), width:  16
 Scan time: 12.940

The best scores are:                                      opt bits E(85289)
NP_001177779 (OMIM: 604911) CCR4-NOT transcription ( 713) 4901 565.5 2.6e-160
XP_016867724 (OMIM: 604911) PREDICTED: CCR4-NOT tr ( 713) 4901 565.5 2.6e-160
NP_001177778 (OMIM: 604911) CCR4-NOT transcription ( 710) 4859 560.8 6.8e-159
NP_001177776 (OMIM: 604911) CCR4-NOT transcription ( 642) 3773 438.4 4.2e-122
NP_037448 (OMIM: 604911) CCR4-NOT transcription co ( 639) 3731 433.7 1.1e-120
NP_001177777 (OMIM: 604911) CCR4-NOT transcription ( 575) 3708 431.0 6.1e-120
NP_001008226 (OMIM: 604911) CCR4-NOT transcription ( 572) 3666 426.3 1.6e-118


>>NP_001177779 (OMIM: 604911) CCR4-NOT transcription com  (713 aa)
 initn: 4901 init1: 4901 opt: 4901  Z-score: 2999.2  bits: 565.5 E(85289): 2.6e-160
Smith-Waterman score: 4901; 100.0% identity (100.0% similar) in 713 aa overlap (1-713:1-713)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
              610       620       630       640       650       660

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
              670       680       690       700       710   

>>XP_016867724 (OMIM: 604911) PREDICTED: CCR4-NOT transc  (713 aa)
 initn: 4901 init1: 4901 opt: 4901  Z-score: 2999.2  bits: 565.5 E(85289): 2.6e-160
Smith-Waterman score: 4901; 100.0% identity (100.0% similar) in 713 aa overlap (1-713:1-713)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
              610       620       630       640       650       660

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
              670       680       690       700       710   

>>NP_001177778 (OMIM: 604911) CCR4-NOT transcription com  (710 aa)
 initn: 4861 init1: 3025 opt: 4859  Z-score: 2973.7  bits: 560.8 E(85289): 6.8e-159
Smith-Waterman score: 4859; 99.4% identity (99.6% similar) in 713 aa overlap (1-713:1-710)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::   .::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270          280       290       

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       420       430       440       450       460       470       

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       480       490       500       510       520       530       

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       540       550       560       570       580       590       

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
       600       610       620       630       640       650       

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       660       670       680       690       700       710

>>NP_001177776 (OMIM: 604911) CCR4-NOT transcription com  (642 aa)
 initn: 3743 init1: 3743 opt: 3773  Z-score: 2313.2  bits: 438.4 E(85289): 4.2e-122
Smith-Waterman score: 4272; 90.0% identity (90.0% similar) in 713 aa overlap (1-713:1-642)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
NP_001 VA----------------------------------------------------------
                                                                   

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                    :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------------GIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                         550       560       570       580         

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
     590       600       610       620       630       640  

>>NP_037448 (OMIM: 604911) CCR4-NOT transcription comple  (639 aa)
 initn: 3701 init1: 1865 opt: 3731  Z-score: 2287.6  bits: 433.7 E(85289): 1.1e-120
Smith-Waterman score: 4230; 89.5% identity (89.6% similar) in 713 aa overlap (1-713:1-639)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::   .::::::::::::::::::::::::::
NP_037 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270          280       290       

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       420       430       440       450       460       470       

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       480       490       500       510       520       530       

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
NP_037 VA----------------------------------------------------------
                                                                   

              610       620       630       640       650       660
pF1KB9 DSPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                    :::::::::::::::::::::::::::::::::::::::::::::::
NP_037 -------------GIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
                  540       550       560       570       580      

              670       680       690       700       710   
pF1KB9 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
        590       600       610       620       630         

>>NP_001177777 (OMIM: 604911) CCR4-NOT transcription com  (575 aa)
 initn: 3708 init1: 3708 opt: 3708  Z-score: 2274.3  bits: 431.0 E(85289): 6.1e-120
Smith-Waterman score: 3708; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
NP_001 VAGEEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA                         
              550       560       570                              

>>NP_001008226 (OMIM: 604911) CCR4-NOT transcription com  (572 aa)
 initn: 3668 init1: 1850 opt: 3666  Z-score: 2248.7  bits: 426.3 E(85289): 1.6e-118
Smith-Waterman score: 3666; 99.3% identity (99.4% similar) in 542 aa overlap (1-542:1-539)

               10        20        30        40        50        60
pF1KB9 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
       ::::::::::::::::::::::::::::::   .::::::::::::::::::::::::::
NP_001 LQELYKLNPNFLQLSTGSVDKNKNKVTPLQ---SPIDKPSDSLSIGNGDNSQQISNSDTP
              250       260       270          280       290       

              310       320       330       340       350       360
pF1KB9 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB9 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB9 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAATNANSLNSTFSVLPQRFPQFQ
       420       430       440       450       460       470       

              490       500       510       520       530       540
pF1KB9 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
       480       490       500       510       520       530       

              550       560       570       580       590       600
pF1KB9 VADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNTATTDSLSW
       ::                                                          
NP_001 VAGEEEVKVSTMPLSTSSHSLQQGQQPTSLHTTVA                         
       540       550       560       570                           




713 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:14:14 2016 done: Thu Nov  3 23:14:15 2016
 Total Scan time: 12.940 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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