Result of FASTA (ccds) for pF1KB5603
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5603, 466 aa
  1>>>pF1KB5603 466 - 466 aa - 466 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0195+/-0.00092; mu= 9.1517+/- 0.056
 mean_var=97.7978+/-19.226, 0's: 0 Z-trim(108.0): 20  B-trim: 50 in 1/48
 Lambda= 0.129691
 statistics sampled from 9900 (9913) to 9900 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.305), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15      ( 466) 3051 581.4  7e-166
CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3        ( 265)  538 111.1 1.5e-24
CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3        ( 276)  516 107.0 2.6e-23
CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2        ( 260)  513 106.4 3.7e-23
CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12       ( 271)  509 105.7 6.4e-23
CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2         ( 261)  508 105.5 7.1e-23
CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17      ( 244)  406 86.4 3.7e-17


>>CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15           (466 aa)
 initn: 3051 init1: 3051 opt: 3051  Z-score: 3091.6  bits: 581.4 E(32554): 7e-166
Smith-Waterman score: 3051; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)

               10        20        30        40        50        60
pF1KB5 MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PKEERENPSKRSRIERDIDNNLITSTPRAGEKPNKQISRVRRKSQVNGEAGSYEMTNQHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PKEERENPSKRSRIERDIDNNLITSTPRAGEKPNKQISRVRRKSQVNGEAGSYEMTNQHV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KQNGKLEDNPSSGSPPRTTLLGTIFSPVFNFFSPANKNGTSGSDSPGQAVEAEEIVKQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KQNGKLEDNPSSGSPPRTTLLGTIFSPVFNFFSPANKNGTSGSDSPGQAVEAEEIVKQLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MEQVDEITTSTTTSTNGAAYSNQAVQVRPSLNNGLEEAEETVNRDIPPLTAPVTPDSGYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEQVDEITTSTTTSTNGAAYSNQAVQVRPSLNNGLEEAEETVNRDIPPLTAPVTPDSGYS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 CSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 NILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPI
              370       380       390       400       410       420

              430       440       450       460      
pF1KB5 ESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
              430       440       450       460      

>>CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3             (265 aa)
 initn: 564 init1: 291 opt: 538  Z-score: 554.4  bits: 111.1 E(32554): 1.5e-24
Smith-Waterman score: 538; 47.4% identity (73.4% similar) in 192 aa overlap (264-449:66-255)

           240       250       260       270             280       
pF1KB5 TPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQ--LNRKPA---LP-LKTRSTPE
                                     .:::.::.  :.. ::   :: . . .  .
CCDS33 KQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGK
          40        50        60        70        80        90     

       290       300       310       320       330       340       
pF1KB5 FSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIIL
         .:.:::::::: :.. . .: .  :: .. .:.::::  ::   :::.::.:..: .:
CCDS33 KCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVL
         100       110       120       130       140       150     

       350       360       370       380       390       400       
pF1KB5 FTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSP
       ::::   ::: . ..:: .  . : ::::: ::  .:::.:::. :::.:::.::.::::
CCDS33 FTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSP
         160       170        180       190       200       210    

       410       420       430       440       450       460      
pF1KB5 QAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
        .. ..  :..:..::: : .:.::: ::::.: : . ..::                 
CCDS33 ASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSR-EDDVYSMLHRLCNR       
          220       230       240       250        260            

>>CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3             (276 aa)
 initn: 564 init1: 291 opt: 516  Z-score: 531.9  bits: 107.0 E(32554): 2.6e-23
Smith-Waterman score: 521; 43.8% identity (70.0% similar) in 203 aa overlap (264-449:66-266)

           240       250       260       270            280        
pF1KB5 TPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEE-----QLNRKPALPLKTRST---
                                     .:::.::     . ... ..:. .  .   
CCDS33 KQRSRSILSSFFCCFRDYNVEAPPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYL
          40        50        60        70        80        90     

          290               300       310       320       330      
pF1KB5 -PEFSL--------VLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFL
        :: ..        :.:::::::: :.. . .: .  :: .. .:.::::  ::   :::
CCDS33 LPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFL
         100       110       120       130       140       150     

        340       350       360       370       380       390      
pF1KB5 ERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRD
       .::.:..: .:::::   ::: . ..:: .  . : ::::: ::  .:::.:::. :::.
CCDS33 QRMGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRE
         160       170       180        190       200       210    

        400       410       420       430       440       450      
pF1KB5 LSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDR
       :::.::.:::: .. ..  :..:..::: : .:.::: ::::.: : . ..::       
CCDS33 LSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSR-EDDVYSMLHRL
          220       230       240       250       260        270   

        460      
pF1KB5 FRLHDLLPPD
                 
CCDS33 CNR       
                 

>>CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2             (260 aa)
 initn: 500 init1: 273 opt: 513  Z-score: 529.3  bits: 106.4 E(32554): 3.7e-23
Smith-Waterman score: 513; 43.4% identity (73.5% similar) in 196 aa overlap (265-454:61-254)

          240       250       260       270             280        
pF1KB5 PDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQ--LNRKPA---LP-LKTRSTPEF
                                     : :.::.  . . :.   ::  :.... ..
CCDS56 QKPRSRGILHSLFCCVCRDDGEALPAHSGAPLLVEENGAIPKTPVQYLLPEAKAQDSDKI
               40        50        60        70        80        90

      290       300       310       320       330       340        
pF1KB5 SLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILF
        .:.:::::::: :.. ...: . .:: .. :..::::  ::   :::.::....: .::
CCDS56 CVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLF
              100       110       120       130       140       150

      350       360       370       380       390       400        
pF1KB5 TASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQ
       :::   ::: . ..:: :    : ::::: ::  .:::.:::. ::::: ...:.:::: 
CCDS56 TASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPA
              160        170       180       190       200         

      410       420       430       440       450       460      
pF1KB5 AFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
       ..... .:..:. ::: . .:.::  :.::.:.: ... ::   .:            
CCDS56 SYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVD-DVYSVLRQPRPGS      
     210       220       230       240        250       260      

>>CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12            (271 aa)
 initn: 497 init1: 283 opt: 509  Z-score: 525.0  bits: 105.7 E(32554): 6.4e-23
Smith-Waterman score: 509; 41.5% identity (69.1% similar) in 217 aa overlap (238-449:51-261)

       210       220       230       240        250       260      
pF1KB5 RPSLNNGLEEAEETVNRDIPPLTAPVTPDSGYSSAHAE-ATYEEDWEVFDPYYFIKHVPP
                                     : ::. .: :.:.:. ...    ... .  
CCDS41 QGLVSKSSPKKPRGRNIFKALFCCFRAQHVGQSSSSTELAAYKEEANTIAKSDLLQCL--
               30        40        50        60        70          

        270       280           290       300       310       320  
pF1KB5 LTEEQLNRKPALPLKTRSTPE----FSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIY
         . :. . :.  :  . : :    . .:.:::::::: :.. ...: .  :. .. . .
CCDS41 --QYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTH
         80        90       100       110       120       130      

            330       340       350       360       370       380  
pF1KB5 QVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCV
       ::::  ::.  :::.::....: .:::::   ::: . ..:: .  . : ::::: ::  
CCDS41 QVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFRESCVFH
        140       150       160       170        180       190     

            390       400       410       420       430       440  
pF1KB5 QGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKL
       :: :.:::. ::::: ::.:.:::: .. ..  :..:..::: :  :.:::.:::..:.:
CCDS41 QGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEEL
         200       210       220       230       240       250     

            450       460      
pF1KB5 VELNEDVRPHIRDRFRLHDLLPPD
           :::                 
CCDS41 -SGAEDVYTSLGQLRAP       
          260       270        

>>CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2              (261 aa)
 initn: 500 init1: 273 opt: 508  Z-score: 524.2  bits: 105.5 E(32554): 7.1e-23
Smith-Waterman score: 508; 44.9% identity (75.3% similar) in 178 aa overlap (278-454:80-255)

       250       260       270        280       290       300      
pF1KB5 YEEDWEVFDPYYFIKHVPPLTEEQLNRKPALP-LKTRSTPEFSLVLDLDETLVHCSLNEL
                                     ::  :.... .. .:.:::::::: :.. .
CCDS24 DGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPV
      50        60        70        80        90       100         

        310       320       330       340       350       360      
pF1KB5 EDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPK
       ..: . .:: .. :..::::  ::   :::.::....: .:::::   ::: . ..:: :
CCDS24 NNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-K
     110       120       130       140       150       160         

        370       380       390       400       410       420      
pF1KB5 KQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMD
           : ::::: ::  .:::.:::. ::::: ...:.:::: ..... .:..:. ::: .
CCDS24 WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDN
      170       180       190       200       210       220        

        430       440       450       460      
pF1KB5 KNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD
        .:.::  :.::.:.: ... ::   .:            
CCDS24 MSDTELHDLLPFFEQLSRVD-DVYSVLRQPRPGS      
      230       240        250       260       

>>CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17           (244 aa)
 initn: 426 init1: 354 opt: 406  Z-score: 421.5  bits: 86.4 E(32554): 3.7e-17
Smith-Waterman score: 424; 35.0% identity (62.4% similar) in 226 aa overlap (252-462:21-243)

             230       240       250       260       270       280 
pF1KB5 VNRDIPPLTAPVTPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLK
                                     :  :  : . ...  . . :  :   :::.
CCDS11           MMRTQCLLGLRTFVAFAAKLWSFF-IYLLRRQIRTVIQYQTVRYDILPLS
                         10        20         30        40         

                   290       300       310       320               
pF1KB5 TRSTPEFS------LVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQV---------YV
         :  ...      :::::::::.:   . .   ..  :    : : .:         .:
CCDS11 PVSRNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVR-PGTPPDFILKVVIDKHPVRFFV
      50        60        70        80         90       100        

        330       340       350       360       370       380      
pF1KB5 RLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNY
       . ::    ::: .:: ::...:::: ..:.. . . :: .......: .:.::.   :.:
CCDS11 HKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSY
      110       120       130       140       150       160        

        390       400       410       420       430       440      
pF1KB5 IKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN
       ::::...  :::. .:.:::: :.  . .:.:::.::: : .:. ::.:.:.:. : ...
CCDS11 IKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDAL-RFT
      170       180       190       200       210       220        

        450       460      
pF1KB5 EDVRPHIRDRFRLHDLLPPD
        :::  .   .. : :    
CCDS11 ADVRSVLSRNLHQHRLW   
       230       240       




466 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:43:00 2016 done: Thu Nov  3 22:43:00 2016
 Total Scan time:  3.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com