FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
pF1KB5469, 158 aa
vs /omim/omim.rfq.tfa library
10741820 residues in 18658 sequences
Expectation_n fit: rho(ln(x))= 4.1272+/-0.000433; mu= 12.7451+/- 0.026
mean_var=65.9215+/-12.892, 0's: 0 Z-trim: 3 B-trim: 0 in 0/59
Lambda= 0.157965
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(18658)
NP_004291 (OMIM: 171500) acid phosphatase 1 isofor ( 158) 1078 253.4 2.4e-68
NP_009030 (OMIM: 171500) acid phosphatase 1 isofor ( 158) 940 222.0 6.9e-59
NP_001035739 (OMIM: 171500) acid phosphatase 1 iso ( 112) 541 130.9 1.3e-31
>>NP_004291 (OMIM: 171500) acid phosphatase 1 isoform c (158 aa)
initn: 1078 init1: 1078 opt: 1078 Z-score: 1336.3 bits: 253.4 E(): 2.4e-68
Smith-Waterman score: 1078; 99.367% identity (100.000% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_004 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
70 80 90 100 110 120
130 140 150
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
::::::::::::::::::::::::::::::::::::::
NP_004 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
130 140 150
>>NP_009030 (OMIM: 171500) acid phosphatase 1 isoform b (158 aa)
initn: 940 init1: 940 opt: 940 Z-score: 1166.3 bits: 222.0 E(): 6.9e-59
Smith-Waterman score: 940; 86.709% identity (93.671% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
:::::::::::::::::::::::::::::::::::::::: .::.:.: ...: :: :.
NP_009 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
::.. ::: .: :::::::::::::::::::::::::::::::.::::::::::::::
NP_009 VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
70 80 90 100 110 120
130 140 150
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
::::::::::::::::::::::::::::::::::::::
NP_009 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
130 140 150
>>NP_001035739 (OMIM: 171500) acid phosphatase 1 isoform (112 aa)
initn: 535 init1: 535 opt: 541 Z-score: 676.6 bits: 130.9 E(): 1.3e-31
Smith-Waterman score: 541; 85.263% identity (91.579% similar) in 95 aa overlap (1-95:1-93)
10 20 30 40 50 60
pF1KB5 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNRVKTCKAKIELLGSY
:::::::::::::::::. . :. .::.. :
NP_001 QSCMKRHGIPMSHVARQVPSLDLKLC--VLCFSGSLTAVLFLTGTWAGPQTQEL
70 80 90 100 110
130 140 150
pF1KB5 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
158 residues in 1 query sequences
10741820 residues in 18658 library sequences
Tcomplib [34.26] (6 proc)
start: Wed Mar 5 21:22:47 2008 done: Wed Mar 5 21:22:48 2008
Total Scan time: 2.240 Total Display time: 0.010
Function used was FASTA [version 34.26.5 April 26, 2007]