GENSCAN 1.0	Date run:  3-Nov-116	Time: 22:33:40

Sequence gi568815589f:131189998_131408284 : 218287 bp : 50.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7219   9018 1800  2  0   88  110   617 0.858  51.22
 1.02 Intr +  11650  11720   71  2  2  107   99    54 0.987   7.30
 1.03 Intr +  25215  25371  157  2  1   90  108    40 0.903   5.78
 1.04 Intr +  32781  32933  153  1  0  124   78    55 0.957   8.14
 1.05 Intr +  38163  38334  172  1  1   96  102    95 0.933  10.70
 1.06 Intr +  40633  40772  140  1  2   42   99    52 0.684   1.81
 1.07 Intr +  42287  42311   25  0  1  110   99     8 0.523   1.18
 1.08 Intr +  42424  42563  140  1  2   96   55    20 0.550  -0.39
 1.09 Intr +  43730  43918  189  0  0   40   68    95 0.019   2.26
 1.10 Intr +  45966  46043   78  1  0   71   75    36 0.019   0.12
 1.11 Intr +  49894  50023  130  2  1   89   33    78 0.002   2.15
 1.12 Intr +  62309  62490  182  2  2   99   36   200 0.954  15.41
 1.13 Term +  62698  62834  137  2  2   90   49   119 0.985   6.38
 1.14 PlyA +  63902  63907    6                               1.05

 2.07 PlyA -  68102  68097    6                               1.05
 2.06 Term -  71353  70825  529  0  1  112   48  1233 0.166 115.43
 2.05 Intr -  86138  85860  279  1  0   -4   84   469 0.187  33.89
 2.04 Intr -  86946  86693  254  0  2   96   33   154 0.192   6.93
 2.03 Intr -  87229  87154   76  0  1   45   66    88 0.328   1.82
 2.02 Intr -  90423  90247  177  2  0  102   56   107 0.341   7.93
 2.01 Init -  91915  91875   41  1  2   50   76    30 0.183  -2.32
 2.00 Prom -  96944  96905   40                              -5.36

 3.00 Prom +  99689  99728   40                              -4.36
 3.01 Init + 100001 100451  451  1  1   93   92   757 0.996  72.68
 3.02 Intr + 105679 105739   61  2  1  113  108   -21 0.084   0.19
 3.03 Intr + 111434 111579  146  2  2   54   48   102 0.109   2.73
 3.04 Intr + 117926 118286  361  0  1   93   32   689 0.743  58.08
 3.05 Term + 121096 121270  175  1  1   41   49   143 0.676   2.93
 3.06 PlyA + 132274 132279    6                               1.05

 4.02 PlyA - 132298 132293    6                               1.05
 4.01 Sngl - 150770 150435  336  2  0   55   43   239 0.685  12.13
 4.00 Prom - 153089 153050   40                              -4.96

 5.06 PlyA - 153257 153252    6                               1.05
 5.05 Term - 154251 154008  244  2  1  -28   54   213 0.406   1.67
 5.04 Intr - 154430 154351   80  2  2   75   71    62 0.020   1.55
 5.03 Intr - 163269 163132  138  0  0   72   37   149 0.009   8.86
 5.02 Intr - 180733 180682   52  0  1   77   79    40 0.070   0.91
 5.01 Init - 183444 183221  224  0  2   53   72   177 0.887   8.99
 5.00 Prom - 187444 187405   40                              -3.36

 6.04 PlyA - 187491 187486    6                               1.05
 6.03 Term - 191222 191140   83  0  2   28   51   128 0.436   0.96
 6.02 Intr - 208649 208343  307  2  1    6   42   223 0.004   5.52
 6.01 Init - 218043 217969   75  0  0   78   93    93 0.168   9.89

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  43457  43644  188  0  2  151   38    67 0.836   5.65
S.002 Term -  45748  45684   65  2  2   89   49    67 0.908   0.95
S.003 Intr -  46236  46161   76  0  1   51   80    72 0.894   1.79
S.004 Term -  98051  97881  171  2  0  120   43   139 0.954  10.43
S.005 Term - 163269 163060  210  0  0   72   39   187 0.819   9.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:131189998_131408284|GENSCAN_predicted_peptide_1|1124_aa
XATPSTKESSQPDAFSSGGGSKPSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSG
TALSTTSSKLETPPSKLGELLFPSSLAGETLGSFSGLRVGQADDSTKPTNKASSTSLTST
QPTKTSGVPSGFNFTAPPVLGKHTEPPVTSSATTTSVAPPAATSTSSTAVFGSLPVTSAG
SSGVISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTTAATPLPTSFPTLSFGSLLSSA
TTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAASLLEEQQSAQLPQAPPQTSDSVKKE
PVLAQPAVSNSGTAASSTSLVALSAEATPATTGVPDARTEAVPPASSFSVPGQTAVTAAA
ISSAGPVAVETSSTPIASSTTSIVAPGPSAEAAAFGTVTSGSSVFAQPPAASSSSAFNQL
TNNTATAPSATPVFGQVAASTAPSLFGQQTGSTASTAAATPQVSSSGFSSPAFGTTAPGV
FGQTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQPASSTPTSTSGSVFGAASSTSS
SSSFSFGQSSPNTGGGLFGQSNAPAFGQSPGFGQGGSVFGGTSAATTTAATSGFSFCQAS
GFGSSNTGSVFGQAASTGGIVFGQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANK
NPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFG
FSSPNKTGGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAAS
AGGFGFGSSSNTTSFGTLASQNAPTFGSLSQQTSGFGTQSSGFSGFGSGTGGFSFGSNNS
VCPGSVGVQQQGLGFVDLLFSVAIWQEVPGLAFLRGVVQREKSTPANHSQEDCPVSVALR
SQQSLHQPEHCVFKDGIRSHQRRVLINSIECAVVSLGPSALHIGKRLNADTHITLVIGAS
DGNIGIEAKLSSSGTGRDPGPSRRTPVPHEVFPDPTADRQHSLQEWGSGTRKGPAWVTEP
SCKRKHRPGEPGDPGPPHRRGAGTRPLEELLAFTVSAWSLVNGRLPSGKLLLRDSDPGWK
AVGPAFRPPSHDRTARRRFCEPGGGPHHAETVGAFILDFQPPEL

>gi568815589f:131189998_131408284|GENSCAN_predicted_CDS_1|3375_bp
ngggcaacaccctccactaaagagtcaagccagccggacgcattctcatctggtggggga
agcaaaccttcttatgaggccattcctgaaagctcacctccctcaggaatcacatccgca
tcaaacaccaccccaggagaacctgccgcatctagcagcagacctgtggcaccttctgga
actgctctttccaccacctctagtaagctggaaaccccaccgtccaagctgggagagctt
ctgtttccaagttctttggctggagagactctgggaagtttttcaggactgcgggttggc
caagcagatgattctacaaaaccaaccaataaggcttcatccacaagcctaactagtacc
cagccaaccaagacgtcaggcgtgccctcagggtttaattttactgcccccccggtgtta
gggaagcacacggagccccctgtgacatcctctgcaaccaccacctcagtagcaccacca
gcagccaccagcacttcctcaactgccgtttttggcagtctgccagtcaccagtgcagga
tcctctggggtcatcagttttggtgggacatctctaagtgctggcaagactagtttttca
tttggaagccaacagaccaatagcacagtgcccccatctgccccaccaccaactacagct
gccactccccttccaacatcattccccacattgtcatttggtagcctcctgagttcagca
actaccccctccctgcctatgtccgctggcagaagcacagaagaggccacttcatcagct
ttgcctgagaagccaggtgacagtgaggtctcagcatcagcagcctcacttctagaggag
caacagtcagcccagcttccccaggctcctccgcaaacttctgactctgttaaaaaagaa
cctgttcttgcccagcctgcagtcagcaactctggcactgcagcatctagtactagtctt
gtagcactttctgcagaggctaccccagccaccacgggggtccctgatgccaggacggag
gcagtaccacctgcttcctccttttctgtgcctgggcagactgctgtcacagcagctgct
atctcaagtgcaggccctgtggccgtcgaaacatcaagtacccccatagcctccagcacc
acgtccattgttgctcccggcccatctgcagaggcagcagcatttggtaccgtcacttct
ggctcatccgtctttgctcagcctcctgctgccagttctagctcagctttcaaccagctc
accaacaacacagccactgccccctctgccacgcccgtgtttgggcaagtggcagccagc
accgcaccaagtctgtttgggcagcagactggtagcacagccagcacagcagctgccaca
ccacaggtcagcagctcagggtttagcagcccagcttttggtaccacagccccaggggtc
tttggacagacaaccttcgggcaggcctcagtctttgggcagtcggcgagcagtgctgca
agtgtcttttccttcagtcagcctgggttcagttccgtgcctgccttcggtcagcctgct
tcctccactcccacatccaccagtggaagtgtctttggtgccgcctcaagtaccagtagc
tccagttccttctcatttggacagtcttctcccaacacaggaggggggctgtttggccaa
agcaacgctcctgcttttgggcagagtcctggctttggacagggaggctctgtctttggt
ggtacctcagctgccaccacaacagcagcaacctctgggttcagcttttgccaagcttca
ggttttgggtctagtaatactggttctgtgtttggtcaagcagccagtactggtggaata
gtctttggccagcaatcatcctcttccagtggtagcgtgtttgggtctggaaacactgga
agagggggaggtttcttcagtggccttggaggaaaacccagtcaggatgcagccaacaaa
aacccattcagctcggccagtgggggctttggatccacagctacctcaaatacctctaac
ctatttggaaacagtggggccaagacatttggtggatttgccagctcgtcgtttggagag
cagaaacccactggcactttcagctctggaggaggaagtgtggcatcccaaggctttggg
ttttcctctccaaacaaaacaggtggcttcggtgctgctccagtgtttggcagccctcct
acttttgggggatcccctgggtttggaggggtgccagcattcggttcagccccagccttt
acaagccctctgggctcgacgggaggcaaagtgttcggagagggcactgcagctgccagc
gcaggaggattcgggtttgggagcagcagcaacaccacatccttcggcacgctcgcgagt
cagaatgcccccactttcggatcactgtcccaacagacttctggttttgggacccagagt
agcggattctctggttttggatcaggcacaggagggttcagctttgggtcaaataactca
gtttgtcctggaagtgtgggggttcagcagcagggtttgggttttgtggacttgctcttc
tctgtagcaatatggcaggaggtgccaggcctcgccttcttaagaggcgtggttcaaaga
gaaaagagcacgcctgccaatcacagccaagaagattgccccgtttctgtggctctgaga
agccagcagagcctccatcagccagaacactgtgtcttcaaggatggcatcagaagtcac
cagcgtcgggtgttgataaacagcatcgaatgtgccgtggtctcacttggacctagcgcc
ctccacatagggaagaggttgaatgctgacacacatatcacactggtaattggtgcttca
gatggcaacatagggatagaggccaaattgagctcctcagggacagggagagacccaggc
cccagcagacggaccccagtgccccacgaagtcttccctgatcccacagctgaccggcag
cactcacttcaggaatggggctcggggacccgcaaaggtccagcctgggtgacagagccc
agctgcaagaggaagcaccgtcctggggagcccggagacccaggcccccctcacaggcga
ggggctggcacgcggcctctggaggaacttctggccttcaccgtctccgcctggtcactc
gtcaatggccggctgccttctggaaagctgctgctgcgcgacagtgaccctgggtggaag
gctgtgggacctgccttccggcctccgtcacatgaccgcacagcgaggaggcgcttctgt
gaaccaggaggtggccctcaccacgcagaaactgtgggcgccttcatcttggacttccag
cctccagaactgtga

>gi568815589f:131189998_131408284|GENSCAN_predicted_peptide_2|451_aa
MAPGIIPDISGKGIHRHFTRAWMRHEPSTYAEAAVGLCPTPTELRKMTSRRKGCVGKRQG
RRGRELGKPPEPCGSRSPPTPPVRDGISGDVTGGYYSLVLGGRGEAGGGGRSAAPGPCTA
AGSDSGEGTRRPCVGTSGPRPRVGADGDPRRAPPSPASGRSPELASWKPRVGARPEGAGT
SAGALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRAS
AQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNY
PWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTW
LVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPS
ALVKPNANDAQVLMWRPKYGQPLVVIPPKHR

>gi568815589f:131189998_131408284|GENSCAN_predicted_CDS_2|1356_bp
atggctcctggcattatccccgacatctcagggaaggggatacaccggcacttcacacgc
gcgtggatgcgtcatgagccttccacatatgctgaggctgccgtgggtctgtgcccaaca
cccacggagctccggaaaatgacgagcaggaggaagggctgtgtagggaagcggcagggc
cggaggggccgcgagctggggaagccaccagaaccctgcggcagccgctcgccccccacc
ccgcccgtccgggacggtatcagcggagatgtcacgggcggctattattcgctggtcctc
ggcggccgcggcgaagcaggcggcggcggccggagcgcagccccgggaccctgcacggcg
gccggcagcgacagcggcgaagggacgcggcgcccctgcgtggggacgtccggcccgcgc
ccgcgagtgggcgccgacggggacccgcgccgcgctcccccgtcaccggcgagcggccgg
agccctgagctcgcctcctggaagccgcgggtcggcgctcgccccgagggcgccgggacc
tcggccggagcgctcctgtatgccatgggctgtattcagagcatcggaggcaaagccaga
gtcttccgggaagggatcacggtgattgatgtgaaagcctccatcgaccccgtccccact
agcatcgatgagtcctccagcgtggtgctccgctaccggacaccccacttccgggcctcg
gcccaggtggtcatgccgcccatccccaagaaggagacttgggtagttggctggatccag
gcgtgcagccacatggagttctacaaccagtacggcgagcagggcatgtccagctgggag
ctccccgacctccaggagggcaagatccaagccatcagcgactcggatggggtgaactac
ccctggtacggcaacaccacagagacctgcaccatcgtgggccccaccaagagggactcc
aagttcatcatcagcatgaatgacaacttttaccccagcgtcacatgggccgtgcccgtc
agcgagagcaacgtggccaagctcaccaatatctaccgggaccagagcttcaccacctgg
ctggtggccaccaacacctccaccaacgacatgatcatcctgcagacgctgcactggcgc
atgcagctcagcatcgaggtgaaccccaaccggcccctgggccagcgcgcccggctgcgg
gagcccatcgcccaggaccagcccaaaatcctgagcaagaatgagcccatcccgcccagc
gccctggtcaagcccaatgccaacgatgcccaggtcctcatgtggcggcccaagtacggg
cagccgctggtggtgatcccgcccaagcaccggtga

>gi568815589f:131189998_131408284|GENSCAN_predicted_peptide_3|397_aa
MPASQSRARARDRNNVLNRAEFLSLNQPPKGGPEPRSSGRKASGPSAQPPPAGDGARERR
QSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITG
HGIPWIGGTILCLVKSSTLAGQEVLMNLLLAPGNLHSTLCLCGFDCSRDLKFWQLFGHPD
PGWPPVTNHHHQEALLGLASLTCLEVVEVLEPGPDNFDPALLLDIMTVAGVQKLIKRRGP
YETSPSLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVM
IGRHHVTDVLSGFVIGYLQFRLVELVWMPSSTCQMLISAWAPGVVAPGGKEGTGTRCADM
AVSTKQTRDLTLPGFPWTSSLSDTDVSLEPSLCIPFP

>gi568815589f:131189998_131408284|GENSCAN_predicted_CDS_3|1194_bp
atgccagcttcccagagccgggcccgtgcccgggaccgcaacaacgtcctcaaccgggct
gagttcctgtccctgaaccagccccccaaggggggcccggagccccgcagctcgggcaga
aaggcctcgggcccatcagcacagcccccacctgctggtgacggggccagagagcgacgc
cagtcacagcagctgccagaggaggactgcatgcagctgaacccctccttcaagggcatc
gccttcaactccctgctggccatcgatatctgtatgtccaagcggctgggggtgtgcgct
ggccgggcggcgtcctgggccagtgcccgctccatggtcaagctcatcggcatcacgggc
cacggcatcccctggatcggaggcaccatcctctgcctggtgaagagcagcacactggcc
ggccaggaggtgctcatgaatctgctcctggcccctggcaacctccattctacactctgt
ctctgtggatttgactgttctagggacctcaaattctggcagctgttcgggcacccagac
cctggctggccaccagtcaccaaccaccaccaccaggaggccttgcttggcctggcctct
cttacttgtcttgaggtggtggaggtcttggaacctgggccagacaattttgaccctgcc
ctgctcctggacatcatgacggtggccggcgtgcagaagctcatcaagcggcgcggcccg
tacgagacgagccccagcctcctggactacctcaccatggacatctacgccttcccggcc
gggcacgccagccgcgccgccatggtgtccaagttcttcctcagccacctggtgctggcg
gtgcccctgcgtgtgctgctggtgctctgggccctctgcgtgggcctgtcccgcgtgatg
atcggccgccaccacgtcacggacgtcctctccggctttgtcatcggctacctccagttc
cgtctggtggagctggtctggatgccctccagcacctgccagatgctcatctctgcctgg
gctcctggcgttgttgcccctggtggcaaggaaggaactgggacacgatgtgctgacatg
gccgttagcacaaagcagacccgggatctgactcttccaggctttccctggacttcatca
ctctcagacaccgacgtgtctctagaaccatcactctgcatcccctttccatga

>gi568815589f:131189998_131408284|GENSCAN_predicted_peptide_4|111_aa
MKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRINMVKTAILPKVIYRFNAIPVKLPMTF
FTELETTTLKFIWNQKRARIAKSILSKKNKAEGIMLPDFEPYYKATVTKTA

>gi568815589f:131189998_131408284|GENSCAN_predicted_CDS_4|336_bp
atgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaagaggacaca
aacaaatggaagaacattccatgctcatggataggaagaatcaatatggtgaaaacggcc
atactgcccaaggtaatttatagatttaatgccatccctgtcaagctaccaatgactttc
ttcacagaattggaaacaactactttaaagttcatatggaaccagaaaagagcccgcatc
gccaagtcaatcctaagcaaaaagaacaaagctgaaggtatcatgctacctgactttgaa
ccatactacaaggctacagtaaccaaaacagcatga

>gi568815589f:131189998_131408284|GENSCAN_predicted_peptide_5|245_aa
MLAVDSRRVPAPAAVLRVLGSARRSSAATVRLEGGGPAEAGWWPLPRERLSKMLTGALAR
EIERKSDAVVCVTPQCFTCINSLNPYDNPLQQVYAHRIESRDSNRNSYANIHSEVIHNSQ
KVGTIETSLSRGMDKHDVDRSSSPAMEQSWTGNDFDKLTEVGFRRINSIEKTLNDLMELK
TMARELRDACTSFSSRFDQVQERVSVIEDHMNEMKREEKFREKRTKPPRNMGPGEKPKST
FDWCT

>gi568815589f:131189998_131408284|GENSCAN_predicted_CDS_5|738_bp
atgctagcagttgactcccgcagggtcccggcgccggcagccgtgctgcgtgtgttgggt
agtgcgaggcggtccagtgcagcgacagtccggctcgagggcggagggccagccgaagcg
gggtggtggccgctgccccgggaaagactgtccaagatgctgacaggagctttggctcgt
gagattgagaggaagtcagacgccgtggtctgtgtaaccccccagtgctttacatgcatc
aattcattaaatccttacgacaaccctctgcagcaggtctatgcccacaggattgaaagc
agggactcaaacaggaactcgtacgccaacattcatagcgaggttattcacaacagccaa
aaggtgggaacaattgaaacatccctcagcagaggaatggacaagcacgatgtggatcgc
agctcctcgccagcaatggaacaaagctggacagggaatgactttgacaagttgacagaa
gtaggcttcagaagaataaacagcatagagaagaccttaaatgacctgatggagctgaaa
accatggcacgagaactacgtgacgcatgcacaagcttcagtagccgatttgatcaagtg
caagaaagggtatcagtgattgaagatcacatgaatgaaatgaagcgagaagagaagttt
agagaaaaaagaacaaagcctccaagaaatatgggaccaggtgaaaagcccaaatctacc
tttgattggtgtacctga

>gi568815589f:131189998_131408284|GENSCAN_predicted_peptide_6|154_aa
MTITRSTEGLLSNHSNLDAMPPVTPVLKEYLLPDKSIKNAINTAAAAPQRKRLMVILERR
KTVQTEATQLAAEVRTEGSPVQDVKDRQQLEIGFVLPATPAARNASQISAAASTSEVHFS
SDEGCFSVLFLLNRLRIFLNMETQEDTTTSEADM

>gi568815589f:131189998_131408284|GENSCAN_predicted_CDS_6|465_bp
atgactatcaccagaagcaccgaaggactcctcagcaaccactccaacctggatgcaatg
cctcccgttaccccggtgctcaaggagtatctattgcctgacaagtcaattaaaaatgca
ataaatactgctgctgcagccccacagagaaaaagactgatggttatcttggaaaggagg
aagacggtccagacggaagccacacaactggctgcagaggtaagaacggaaggaagtcct
gtacaagatgtgaaagaccgccagcaacttgagataggctttgttctgccagctactcct
gctgcacgcaatgcttcacaaatcagtgctgctgccagcacctcggaggtgcacttcagc
tcggacgaaggatgcttctcagtcctcttcctgctcaaccgcttgagaatattcctcaac
atggagacccaggaagacacaacaactagtgaagctgacatgtga