FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5300, 417 aa
  1>>>pF1KB5300 417 - 417 aa - 417 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2949+/-0.000927; mu= 16.9551+/- 0.055
 mean_var=62.3911+/-12.379, 0's: 0 Z-trim(103.6): 20  B-trim: 0 in 0/51
 Lambda= 0.162373
 statistics sampled from 7489 (7492) to 7489 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.23), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS14438.1 PGK1 gene_id:5230|Hs108|chrX           ( 417) 2717 645.4  3e-185
CCDS4930.1 PGK2 gene_id:5232|Hs108|chr6            ( 417) 2459 584.9 4.7e-167


>>CCDS14438.1 PGK1 gene_id:5230|Hs108|chrX                (417 aa)
 initn: 2717 init1: 2717 opt: 2717  Z-score: 3439.3  bits: 645.4 E(32554): 3e-185
Smith-Waterman score: 2717; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 KATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI
              370       380       390       400       410       

>>CCDS4930.1 PGK2 gene_id:5232|Hs108|chr6                 (417 aa)
 initn: 2521 init1: 2459 opt: 2459  Z-score: 3112.7  bits: 584.9 E(32554): 4.7e-167
Smith-Waterman score: 2459; 87.3% identity (97.8% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVL
       ::::.:::::::::.::::.::::::::::.:::::::::::..::::.:::::::.:::
CCDS49 MSLSKKLTLDKLDVRGKRVIMRVDFNVPMKKNQITNNQRIKASIPSIKYCLDNGAKAVVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLE
       :::::::::::::::::: :::::::::::::::::::::: :::::::::: :::::::
CCDS49 MSHLGRPDGVPMPDKYSLAPVAVELKSLLGKDVLFLKDCVGAEVEKACANPAPGSVILLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
       ::::::::::::.: ::.:.:::: :::::::::::::::::::::::::::::::::::
CCDS49 NLRFHVEEEGKGQDPSGKKIKAEPDKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM
       ::.::.::::::::.:::::::.: :::::::::::::::::::.:::::::::::::::
CCDS49 LPHKASGFLMKKELDYFAKALENPVRPFLAILGGAKVADKIQLIKNMLDKVNEMIIGGGM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQ
       :.::::::::::::.:::::::::::::.:.::.::::.::.::::::.:::::::..:.
CCDS49 AYTFLKVLNNMEIGASLFDEEGAKIVKDIMAKAQKNGVRITFPVDFVTGDKFDENAQVGK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV
       :::::::  :::::::::::.:..:..:..:. ::::::.:::::.:::.::::::::.:
CCDS49 ATVASGISPGWMGLDCGPESNKNHAQVVAQARLIVWNGPLGVFEWDAFAKGTKALMDEIV
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 KATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI
       ::::.::::.::::::::::::::::::::::::::::::::::::.::::.::::.
CCDS49 KATSKGCITVIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVEALSNM
              370       380       390       400       410       




417 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:27:45 2016 done: Thu Nov  3 22:27:46 2016
 Total Scan time:  2.860 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]