GENSCAN 1.0	Date run:  3-Nov-116	Time: 22:24:02

Sequence gi568815593r:134058452_134274022 : 215571 bp : 46.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  10162  10211   50  0  2   95   43    89 0.147   2.58
 1.02 Intr +  14057  14225  169  2  1   26   82   125 0.055   5.65
 1.03 Intr +  17863  17934   72  0  0   89   82    37 0.043   2.80
 1.04 Intr +  25136  25276  141  1  0   30   37   104 0.011   0.05
 1.05 Intr +  34452  34676  225  2  0   53   70    88 0.022   1.68
 1.06 Intr +  45822  45917   96  2  0   80   80    14 0.024   0.01
 1.07 Intr +  55209  55345  137  2  2   37   24   129 0.018   0.77
 1.08 Intr +  55701  55902  202  0  1   43  103    70 0.046   3.29
 1.09 Intr +  56426  56704  279  1  0   42   83   527 0.853  45.27
 1.10 Intr +  56870  56936   67  1  1  120  113    50 0.873   9.18
 1.11 Intr +  57458  57582  125  0  2   80  119   140 0.740  16.60
 1.12 Intr +  63930  64021   92  2  2   73   89    25 0.091  -0.11
 1.13 Intr +  64261  64405  145  1  1   43   75    75 0.354   1.98
 1.14 Intr +  71353  71449   97  0  1   79   94    -3 0.349  -1.02
 1.15 Intr +  74069  74289  221  0  2  121   33    76 0.503   3.42
 1.16 Intr +  79608  79713  106  2  1  102   82    54 0.583   5.99
 1.17 Intr +  80500  80587   88  2  1  113  105     8 0.961   4.03
 1.18 Intr +  83734  83853  120  1  0  120   76   115 0.994  13.11
 1.19 Intr +  84270  84432  163  0  1   80   76   299 0.999  27.88
 1.20 Intr +  84542  84649  108  1  0  119   83   174 0.964  20.48
 1.21 Intr +  85141  85189   49  0  1  129   94    53 0.938   8.25
 1.22 Intr +  87919  88034  116  2  2  114   92     1 0.329   3.27
 1.23 Intr +  91959  92020   62  2  2   22   74    53 0.161  -5.17
 1.24 Term +  93294  93477  184  0  1   79   44   106 0.464   2.32
 1.25 PlyA +  93732  93737    6                               1.05

 2.14 PlyA -  94404  94399    6                               1.05
 2.13 Term -  99317  99282   36  2  0   85   44    54 0.902  -1.96
 2.12 Intr - 100144 100004  141  1  0   50   96   212 0.994  18.75
 2.11 Intr - 102679 102536  144  1  0   42  119   144 0.971  13.38
 2.10 Intr - 108792 108719   74  1  2   29  116    64 0.401   2.43
 2.09 Intr - 115571 115475   97  2  1  101  115    67 0.857  10.28
 2.08 Intr - 122776 122717   60  1  0   82  108     4 0.171   0.73
 2.07 Intr - 127918 127834   85  0  1   88   58    16 0.008  -1.58
 2.06 Intr - 140753 140635  119  2  2  108   78    46 0.876   4.86
 2.05 Intr - 143570 143397  174  2  0   82   91    78 0.994   7.64
 2.04 Intr - 147680 147471  210  2  0   89   86    72 0.941   6.21
 2.03 Intr - 167444 167246  199  1  1  -35   50   451 0.080  28.35
 2.02 Intr - 167618 167471  148  0  1   81    7   250 0.808  15.49
 2.01 Init - 171105 171057   49  0  1   82   58    46 0.637   0.11
 2.00 Prom - 182459 182420   40                              -4.76

 3.00 Prom + 182873 182912   40                              -6.46
 3.01 Init + 185583 185599   17  2  2  110   80     9 0.127   1.75
 3.02 Intr + 188440 188506   67  1  1   74   79    47 0.089   1.31
 3.03 Term + 208956 209144  189  2  0   49   48   151 0.489   4.65
 3.04 PlyA + 209517 209522    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  21862  21709  154  1  1   58   79   144 0.863  10.15
S.002 Init +  55735  55902  168  0  0   77  103   107 0.824   8.88
S.003 Term - 139393 139321   73  0  1   73   39    73 0.809  -1.72


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:134058452_134274022|GENSCAN_predicted_peptide_1|1037_aa
DFLIVFGVKKFHYNVARWLMFMDSTLGGKDQEFCELQGDTALLWAETPDKCPLGLTISLQ
LDHPQVQKCPSHQISAGSSHRVEAFLSPPDSQVTFCKRYVKELWNVQAPDFQASAGRGTP
LHRCLHYEPSTGKDLPKATMCQARRPAELLEFPCLVVHSFDQGLPKTPAAKASFKLMHNH
PSMGIKVICGFMTLSHKSTSNLLQLETAAFWPLASLHVLATTSPKKGGDLLTLSGCRGAG
GCPQWVGIPERMQGLSQAKRAVEARVDADPGAIQMRWNPGTFPRSANLDVSAWIERGRPR
RKSLIGTGMEDGARAATAPRSSNAAGSLGYEHSLKQPQALGSPQFKAQGALEPGHDTVHT
TAAMRPAPRRAERTMPQLDSGGGGAGGGDDLGAPDELLAFQDEGEEQDDKSRDSAAGPER
DLAELKSSLVNESEGAAGGAGIPGVPGAGAGARGEAEALGREHAAQRLFPDKLPEPLEDG
LKAPECTSGMYKETVYSAFNLLMHYPPPSGAGQHPQPQPPLALPGSTKPVSTAAHGNIHT
STATSSATLRLNHTVTPLTPCDWCFLLLCTNKALVEETGVLSGHRGPHPQWYSAQILLLQ
APLSDVKARRWVDWPHAPSRALCNCGNSLVPAGLRPEETATFFAGKVLWGSSIWGFSEST
VRGEGVSLLAVARAVSVHTACEQTAAVYRENADCVYFSPEPAGSWGHKANQPPHGVPQLS
LYEHFNSPHPTPAPADISQKQVHRPLQTPDLSGFYSLTSGSMGQLPHTVSWFTHPSLMLG
SGVPGHPAAIPHPAIVPPSGKQELQPFDRNLKTQAESKAEKEAKKPTIKKPLNAFMLYMK
EMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDN
YGKKKRRSREKHQESTTELLTSPAEPAPTSPGLSTALSLPTPGPPQAPRSTLQSTQRGRK
GISSCIRFSENSTEQKGMLLNTGTQTRGSQQYTRLQGNKYIINELAIYHSNYVPHWKCVK
QEHLRQHFSATTNDHLH

>gi568815593r:134058452_134274022|GENSCAN_predicted_CDS_1|3114_bp
gattttctcattgtctttggtgtcaagaagtttcactacaacgtggctaggtggctgatg
ttcatggacagcacactggggggaaaggaccaggagttctgtgaactgcagggtgacaca
gctctgctctgggcagaaacaccggacaaatgcccattgggtctgaccatcagcctgcaa
ctggaccatcctcaggtgcagaagtgtccaagccaccaaatctctgctggatcctcacat
cgtgtggaggccttcctgagtcccccagactcacaggtcactttctgcaagcgctacgtc
aaagagctctggaatgtccaggctccagacttccaggcctcagctggccgtggtacccct
ctgcacagatgtctccactatgagccttcaactggcaaggacttaccaaaagcaactatg
tgccaggctaggagaccagcggagctgctagaatttccttgtctggtggttcacagcttt
gaccaaggtttgccaaagacacctgcagcaaaggcctctttcaagctaatgcacaatcat
ccttccatggggataaaggtgatttgtggattcatgaccctgagtcataaatctaccagc
aatctgctgcagttggaaacagcagctttctggcccttggcaagcctgcatgtacttgcc
actacaagccccaagaagggaggtgacttgctcacactcagtgggtgcaggggtgctggc
ggctgcccacagtgggtgggcatccctgagcggatgcaggggctgagccaggccaagcgc
gccgtggaggcccgcgtggacgcagacccgggtgccatacagatgcgctggaatccaggc
actttcccgcgctccgcaaatctagatgtttcagcctggatcgagcgagggcggcctaga
aggaagtccctgattggcacagggatggaggatggggcaagagccgcaacagcgccgcgg
agttccaacgctgccggttccctggggtacgagcacagcctcaagcagcctcaagcccta
ggaagcccccagttcaaagcacagggcgcattggagcctgggcacgatacagttcacacc
acggctgcgatgcgccccgcgccccggcgggcggagcgcaccatgccgcagctggactcc
ggcgggggcggcgcgggcggcggcgacgacctcggcgcgccggacgagctgctggccttc
caggatgaaggcgaggagcaggacgacaagagccgcgacagcgccgccggtcccgagcgc
gacctggccgagctcaagtcgtcgctcgtgaacgagtccgagggcgcggccggcggcgca
gggatcccgggggtcccgggggccggcgccggggcccgcggcgaggccgaggctctcggg
cgggaacacgctgcgcagagactcttcccggacaaacttccagagcccctggaggacggc
ctgaaggccccggagtgcaccagcggcatgtacaaagagaccgtctactccgccttcaat
ctgctcatgcattacccacccccctcgggagcagggcagcacccccagccgcagcccccg
ctggctctaccaggttccaccaagccagtttccacggcagcacacgggaatattcatacc
agcactgccacctcctcagctactctgagactcaaccatacagtcacacccctcacacct
tgtgactggtgcttcctgctgctgtgtacaaacaaggctctggtggaggaaacaggtgtt
ttatcaggtcacaggggcccccacccccaatggtacagtgcacagatcctcctgctgcag
gcccctttatctgatgtcaaggccaggcggtgggtggactggccacacgcacctagcaga
gctctgtgcaactgtggcaacagccttgtgccagcaggcttgaggccagaggaaacagca
actttcttcgctgggaaagtgttgtggggctcaagcatttgggggttttcagagtcaacc
gtcagaggcgagggagtttctctgctggcggtggcaagggctgtcagcgtgcacacagcc
tgcgagcagaccgctgcggtctacagggaaaatgccgactgtgtttatttttcacctgag
cctgcaggaagttgggggcacaaggccaatcagcccccccacggtgtcccccaactctct
ctctacgaacatttcaacagcccacatcccacccctgcacctgcggacatcagccagaag
caagttcacaggcctctgcagacccctgacctctctggcttctactccctgacctcaggc
agcatggggcagctcccccacactgtgagctggttcacccacccatccttgatgctaggt
tctggtgtacctggtcacccagcagccatcccccacccggccattgtgcccccctcaggg
aagcaggagctgcagcccttcgaccgcaacctgaagacacaagcagagtccaaggcagag
aaggaggccaagaagccaaccatcaagaagcccctcaatgccttcatgctgtacatgaag
gagatgagagccaaggtcattgcagagtgcacacttaaggagagcgctgccatcaaccag
atcctgggccgcaggtggcacgcgctgtcgcgagaagagcaggccaagtactatgagctg
gcccgcaaggagaggcagctgcacatgcagctatacccaggctggtcagcgcgggacaac
tacgggaagaagaagaggcggtcgagggaaaagcaccaagaatccaccacagaactgctt
actagccctgcggagccggcacctacatccccaggtctctccactgctctcagcctccca
accccagggcccccacaggccccccgcagcaccctgcagagcacacagagaggaagaaag
ggaatcagttcctgcatccgtttctcagaaaacagcacagaacagaagggaatgctgctc
aatactggcacacagaccagaggtagccagcagtacacaagactgcaaggcaacaagtac
attatcaatgaattagccatctatcactcaaactatgtcccgcattggaagtgtgtcaag
caagagcaccttcgacaacacttttcggccaccactaatgatcatctccactga

>gi568815593r:134058452_134274022|GENSCAN_predicted_peptide_2|511_aa
MVVCQVGQAGLELLTSESRALEPQRAEEEAQRPTAEYCGESQRASASLNSRQKYTRNRRR
RVRVGPAERQPAGAGGIMDEKVFTKELDQWIEQLNECKQLSESQVKSLCEKVSCSTAADS
RRGAEPAEEKAAAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLF
MGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANV
WKYFTDLFDYLPLTALVDGQGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSL
LLCQFFPSSKYGNDPRLSTHTTFSLLFQRLFPFDSRNIIWPLPGKFSQMPSIKLQSSDGE
IFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPP
EDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTP
EEIRKTFNIKNDFTEEEEAQVRKENQWCEEK

>gi568815593r:134058452_134274022|GENSCAN_predicted_CDS_2|1536_bp
atggtggtttgccaggttggccaggctggtctcgaactcctgacctcagagagccgagct
ctggagcctcagcgagcggaggaggaggcgcagcggccgacggccgagtactgcggtgag
agccagcgggccagcgccagcctcaacagccgccagaagtacacgaggaaccggcggcgg
cgtgtgcgtgtaggccccgcggagcggcagccggctggggcgggtggcatcatggacgag
aaggtgttcaccaaggagctggaccagtggatcgagcagctgaacgagtgcaagcagctg
tccgagtcccaggtcaagagcctctgcgagaaggtgagctgtagtacggctgcggacagc
cgccgcggggccgagcccgccgaggaaaaggcggccgctaaagaaatcctgacaaaagaa
tccaacgtgcaagaggttcgatgtccagttactgtctgtggagatgtgcatgggcaattt
catgatctcatggaactgtttagaattggtggcaaatcaccagatacaaattacttgttt
atgggagattatgttgacagaggatattattcagttgaaacagttacactgcttgtagct
cttaaggttcgttaccgtgaacgcatcaccattcttcgagggaatcatgagagcagacag
atcacacaagtttatggtttctatgatgaatgtttaagaaaatatggaaatgcaaatgtt
tggaaatattttacagatctttttgactatcttcctctcactgccttggtggatgggcag
ggatataactggtgccatgaccggaatgtagtaacgattttcagtgctccaaactattgt
tatcgttgtggtaaccaagctgcaatcatggaacttgacgatactctaaaatactcttta
ctcctttgccagttcttcccatcctctaaatatggaaatgacccaaggcttagtactcac
acgactttttctctcctcttccagcgcttatttccatttgacagcagaaatataatctgg
ccacttcctggcaaattcagtcaaatgccttcaattaagttgcagagttctgatggagag
atatttgaagttgatgtggaaattgccaaacaatctgtgactattaagaccatgttggaa
gatttgggaatggatgatgaaggagatgatgacccagttcctctaccaaatgtgaatgca
gcaatattaaaaaaggtcattcagtggtgcacccaccacaaggatgaccctcctcctcct
gaagatgatgagaacaaagaaaagcgaacagatgatatccctgtttgggaccaagaattc
ctgaaagttgaccaaggaacactttttgaactcattctggctgcaaactacttagacatc
aaaggtttgcttgatgttacatgcaagactgttgccaatatgatcaaggggaaaactcct
gaggagattcgcaagaccttcaatatcaaaaatgactttactgaagaggaggaagcccag
gtacgcaaagagaaccagtggtgtgaagagaagtga

>gi568815593r:134058452_134274022|GENSCAN_predicted_peptide_3|90_aa
MPGSTRNWKVRYGCSTLVVEQMCLPEAKPSWVTCMLLGGALPYRCRIPTQLKLIPDDMKE
QIYKLAKKGLTPSQVSVILRDAHVLHKYAL

>gi568815593r:134058452_134274022|GENSCAN_predicted_CDS_3|273_bp
atgcctggctccaccaggaactggaaagtcaggtatggctgcagcacactggtggtagag
cagatgtgcctgcctgaggccaagccatcatgggtcacatgcatgctccttggaggggct
ctgccctatcgctgcaggatccccactcagctgaagttgatacctgatgacatgaaggag
cagatttacaaactggccaaaaagggcctgactccctcacaagtcagtgtgatcctgaga
gatgcacatgtgttgcacaagtacgctttgtga