Result of FASTA (omim) for pF1KB5099
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5099, 770 aa
  1>>>pF1KB5099 770 - 770 aa - 770 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2972+/-0.000432; mu= 19.9782+/- 0.027
 mean_var=66.2665+/-13.735, 0's: 0 Z-trim(109.9): 52  B-trim: 355 in 1/51
 Lambda= 0.157553
 statistics sampled from 18081 (18123) to 18081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.212), width:  16
 Scan time: 11.490

The best scores are:                                      opt bits E(85289)
XP_011521530 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 5287 1211.4       0
XP_016878933 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 5287 1211.4       0
NP_001311303 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4       0
XP_011521531 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 5287 1211.4       0
NP_001093112 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4       0
NP_001311308 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4       0
NP_001311306 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4       0
NP_001311307 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4       0
NP_060818 (OMIM: 616190) cap-specific mRNA (nucleo ( 770) 5287 1211.4       0
XP_005249012 (OMIM: 616189) PREDICTED: cap-specifi ( 803)  320 82.4   8e-15
NP_055865 (OMIM: 616189) cap-specific mRNA (nucleo ( 835)  320 82.5 8.3e-15
NP_803188 (OMIM: 300499,309549) putative tRNA (cyt ( 327)  144 42.2  0.0042
XP_005272652 (OMIM: 300499,309549) PREDICTED: puta ( 327)  144 42.2  0.0042
NP_036412 (OMIM: 300499,309549) putative tRNA (cyt ( 329)  144 42.2  0.0042
XP_011542197 (OMIM: 300499,309549) PREDICTED: puta ( 335)  144 42.2  0.0043
XP_016884871 (OMIM: 300499,309549) PREDICTED: puta ( 335)  144 42.2  0.0043
XP_011542195 (OMIM: 300499,309549) PREDICTED: puta ( 337)  144 42.2  0.0043
XP_011542196 (OMIM: 300499,309549) PREDICTED: puta ( 337)  144 42.2  0.0043


>>XP_011521530 (OMIM: 616190) PREDICTED: cap-specific mR  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_011 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>XP_016878933 (OMIM: 616190) PREDICTED: cap-specific mR  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_016 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>NP_001311303 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>XP_011521531 (OMIM: 616190) PREDICTED: cap-specific mR  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_011 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>NP_001093112 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>NP_001311308 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>NP_001311306 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>NP_001311307 (OMIM: 616190) cap-specific mRNA (nucleos  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>NP_060818 (OMIM: 616190) cap-specific mRNA (nucleoside  (770 aa)
 initn: 5287 init1: 5287 opt: 5287  Z-score: 6489.0  bits: 1211.4 E(85289):    0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_060 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_060 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
              670       680       690       700       710       720

              730       740       750       760       770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
              730       740       750       760       770

>>XP_005249012 (OMIM: 616189) PREDICTED: cap-specific mR  (803 aa)
 initn: 312 init1: 284 opt: 320  Z-score: 387.1  bits: 82.4 E(85289): 8e-15
Smith-Waterman score: 320; 29.8% identity (60.5% similar) in 228 aa overlap (143-361:276-491)

            120       130       140       150       160       170  
pF1KB5 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
                                     .: .::.:    ..:.  ..     .: :.
XP_005 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
         250       260       270       280           290           

            180       190        200          210       220        
pF1KB5 TLNPYHEANDDLMMIMDDRLIANT-LHWWYFGP---DNTGDIMTLKFLTGLQNFI---SS
        ..   .. .:.   ..:   :.. :   :.:    :. :::   . .....::.   ..
XP_005 GFGMTLKGPNDFK--LEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTD
        300         310       320       330       340       350    

         230       240       250       260       270       280     
pF1KB5 MATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSI
          ::.. :::.:. .:. . :: : ..:  :. . ::. . .:: :. : : .:   :.
XP_005 RKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSV
          360       370       380       390       400       410    

         290       300       310       320        330       340    
pF1KB5 NLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRK
       .:.::: :::..: .::: ::. .::: ::::   : : . ..  :  ...... ...  
XP_005 GLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNT
          420       430       440       450       460        470   

          350        360       370       380       390       400   
pF1KB5 ALFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQY
           . :.:   .:  ::                                          
XP_005 DSDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRK
           480       490       500       510       520       530   




770 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:16:18 2016 done: Thu Nov  3 22:16:20 2016
 Total Scan time: 11.490 Total Display time:  0.240

Function used was FASTA [36.3.4 Apr, 2011]
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