Result of FASTA (ccds) for pF1KB5063
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5063, 775 aa
  1>>>pF1KB5063 775 - 775 aa - 775 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0822+/-0.00103; mu= 15.4219+/- 0.062
 mean_var=67.1713+/-13.587, 0's: 0 Z-trim(103.7): 24  B-trim: 248 in 1/50
 Lambda= 0.156489
 statistics sampled from 7505 (7517) to 7505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.231), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(32554)
CCDS2788.1 QARS gene_id:5859|Hs108|chr3            ( 775) 5228 1189.8       0
CCDS63633.1 QARS gene_id:5859|Hs108|chr3           ( 764) 4706 1072.0       0
CCDS31027.1 EPRS gene_id:2058|Hs108|chr1           (1512)  863 204.4 1.1e-51


>>CCDS2788.1 QARS gene_id:5859|Hs108|chr3                 (775 aa)
 initn: 5228 init1: 5228 opt: 5228  Z-score: 6372.1  bits: 1189.8 E(32554):    0
Smith-Waterman score: 5228; 100.0% identity (100.0% similar) in 775 aa overlap (1-775:1-775)

               10        20        30        40        50        60
pF1KB5 MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SRLRDTRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SRLRDTRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LEADLEKKFKVAKARLEETDRRTAKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LEADLEKKFKVAKARLEETDRRTAKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCHQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 RGEELKGHNTLPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGKMDPVAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RGEELKGHNTLPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGKMDPVAYRV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 KYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 QWEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QWEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 VTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAKSLDIQVPNFPADET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAKSLDIQVPNFPADET
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 KGFHQVPFAPIVFIERTDFKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KGFHQVPFAPIVFIERTDFKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVES
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 LEVTCRRADAGEKPKAFIHWVSQPLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LEVTCRRADAGEKPKAFIHWVSQPLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLASL
              670       680       690       700       710       720

              730       740       750       760       770     
pF1KB5 HVVDAALVDCSVALAKPFDKFQFERLGYFSVDPDSHQGKLVFNRTVTLKEDPGKV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HVVDAALVDCSVALAKPFDKFQFERLGYFSVDPDSHQGKLVFNRTVTLKEDPGKV
              730       740       750       760       770     

>>CCDS63633.1 QARS gene_id:5859|Hs108|chr3                (764 aa)
 initn: 4706 init1: 4706 opt: 4706  Z-score: 5735.3  bits: 1072.0 E(32554):    0
Smith-Waterman score: 5123; 98.5% identity (98.6% similar) in 775 aa overlap (1-775:1-764)

               10        20        30        40        50        60
pF1KB5 MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SRLRDTRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPE
       :::::::::::::::::.           :::::::::::::::::::::::::::::::
CCDS63 SRLRDTRRLSFLVSYIAT-----------ALEYVRSHPLDPIDTVDFERECGVGVIVTPE
               70                   80        90       100         

              130       140       150       160       170       180
pF1KB5 QIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPK
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KB5 LEADLEKKFKVAKARLEETDRRTAKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LEADLEKKFKVAKARLEETDRRTAKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKT
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KB5 PGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KB5 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCHQ
     290       300       310       320       330       340         

              370       380       390       400       410       420
pF1KB5 RGEELKGHNTLPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGKMDPVAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RGEELKGHNTLPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGKMDPVAYRV
     350       360       370       380       390       400         

              430       440       450       460       470       480
pF1KB5 KYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPV
     410       420       430       440       450       460         

              490       500       510       520       530       540
pF1KB5 QWEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QWEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVG
     470       480       490       500       510       520         

              550       560       570       580       590       600
pF1KB5 VTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAKSLDIQVPNFPADET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAKSLDIQVPNFPADET
     530       540       550       560       570       580         

              610       620       630       640       650       660
pF1KB5 KGFHQVPFAPIVFIERTDFKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KGFHQVPFAPIVFIERTDFKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVES
     590       600       610       620       630       640         

              670       680       690       700       710       720
pF1KB5 LEVTCRRADAGEKPKAFIHWVSQPLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LEVTCRRADAGEKPKAFIHWVSQPLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLASL
     650       660       670       680       690       700         

              730       740       750       760       770     
pF1KB5 HVVDAALVDCSVALAKPFDKFQFERLGYFSVDPDSHQGKLVFNRTVTLKEDPGKV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HVVDAALVDCSVALAKPFDKFQFERLGYFSVDPDSHQGKLVFNRTVTLKEDPGKV
     710       720       730       740       750       760    

>>CCDS31027.1 EPRS gene_id:2058|Hs108|chr1                (1512 aa)
 initn: 725 init1: 443 opt: 863  Z-score: 1041.3  bits: 204.4 E(32554): 1.1e-51
Smith-Waterman score: 888; 34.5% identity (60.2% similar) in 527 aa overlap (245-752:176-681)

          220       230       240       250       260          270 
pF1KB5 DQTLSLMEQLRGEALKFHKPGENYKTPGYVVTPHTMNLLKQHLEITG---GQVRTRFPPE
                                     :.:.  . . . .:. :   :.: .:::::
CCDS31 HVKRWFGFLEAQQAFQSVGTKWDVSTTKARVAPEKKQDVGKFVELPGAEMGKVTVRFPPE
         150       160       170       180       190       200     

             280       290       300       310       320       330 
pF1KB5 PNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDMVAWLGYTPYK
        .: ::::::::  .:  :    .:  ..::::::::::.  :  .: . :: :   : .
CCDS31 ASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQ
         210       220       230       240       250       260     

             340       350       360         370       380         
pF1KB5 VTYASDYFDQLYAWAVELIRRGLAYVCHQRGEELKGH--NTLPSPWRDRPMEESLLLFEA
        ::.::.:. .. .: .::..: :::    .:..:..  . . :  :  :.:..: ..: 
CCDS31 FTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIDSKHRKNPIEKNLQMWEE
         270       280       290       300       310       320     

     390        400         410        420       430       440     
pF1KB5 MRKG-KFSEGEATLRMKLVM--EDGKM-DPVAYRVKYTPHHRTGDKWCIYPTYDYTHCLC
       :.:: .:...   :: :. :  ..: : ::. :: :  :: :::.:. .:::::..  . 
CCDS31 MKKGSQFGQS-CCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIV
         330        340       350       360       370       380    

         450       460       470       480       490       500     
pF1KB5 DSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPVQWEYGRLNLHYAVVSKRKILQLVAT
       :::: .::.: : :.. :  ...:. .:: .  :  :::.::::. .:.::::.  .:  
CCDS31 DSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNE
          390       400       410       420       430       440    

         510       520       530       540       550       560     
pF1KB5 GAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVGVTVAQTTMEPHLLEACVRDVLNDTA
       : :  :::::. :. .. :::.  :....: :  : . . ..::   . :  . :.. .:
CCDS31 GLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVA
          450       460       470       480       490       500    

         570       580       590       600       610          620  
pF1KB5 PRAMAVLESLRVIITNFPAAKSLDIQVPNFPADETKGFHQVPFAPIVFIERTD---FKEE
       :: .:.:.. .:: .: : :.    .: . : .   :.. : ..: :::: .:   :.: 
CCDS31 PRYVALLKK-EVIPVNVPEAQEEMKEVAKHPKNPEVGLKPVWYSPKVFIEGADAETFSEG
          510        520       530       540       550       560   

            630       640       650       660       670       680  
pF1KB5 PEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVESLEVTCRRADAGEKPKAFIHWVS
           :  . ::.          ... .. :. .: . ::..     .   :  . . :..
CCDS31 EMVTF--INWGN----------LNITKIHKNADGKIISLDAKLNLENKDYKKTTKVTWLA
             570                 580       590       600       610 

                   690       700       710       720       730     
pF1KB5 Q-------PLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLASLHVVDAALVDCSVALA
       .       :..: .  ::.:.  :      :    : . .:  : :  .  : :  .   
CCDS31 ETTHALPIPVICVT--YEHLIT-KPVLGKDE---DFKQYVNKNSKHE-ELMLGDPCLKDL
             620         630           640       650        660    

         740       750       760       770                         
pF1KB5 KPFDKFQFERLGYFSVDPDSHQGKLVFNRTVTLKEDPGKV                    
       :  : .:..: :.:  :                                           
CCDS31 KKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSGSKEKTKVEAT
          670       680       690       700       710       720    




775 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:15:01 2016 done: Thu Nov  3 22:15:02 2016
 Total Scan time:  3.910 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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