GENSCAN 1.0	Date run:  3-Nov-116	Time: 21:38:07

Sequence gi568815587r:111642053_111866361 : 224309 bp : 41.43% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +  11397  11621  225  2  0   58   54   194 0.552   8.80
 1.02 PlyA +  12026  12031    6                               1.05

 2.04 PlyA -  12104  12099    6                               1.05
 2.03 Term -  29334  28901  434  1  2  -95   47   395 0.137  11.57
 2.02 Intr -  29770  29549  222  2  0 -117   66   301 0.112   4.58
 2.01 Init -  30172  29869  304  1  1   53   32   320 0.081  18.79
 2.00 Prom -  34061  34022   40                              -6.05

 3.00 Prom +  34325  34364   40                              -4.55
 3.01 Init +  39872  39920   49  1  1   44  110    29 0.392   1.86
 3.02 Intr +  45949  46110  162  2  0  117   93   187 0.846  21.13
 3.03 Intr +  58834  58958  125  2  2   62   19   162 0.668   6.08
 3.04 Intr +  59400  59523  124  2  1   78   84    76 0.994   5.44
 3.05 Intr +  61043  61371  329  0  2   84   88   319 0.823  25.99
 3.06 Intr +  62935  63087  153  0  0   88   90   166 0.911  16.15
 3.07 Intr +  70159  70323  165  0  0   79  102   115 0.455  11.24
 3.08 Intr +  77723  77951  229  1  1   85   96   184 0.983  15.42
 3.09 Intr +  78426  78710  285  1  0   81   84   223 0.999  17.59
 3.10 Intr +  78847  79010  164  2  2   96   94    86 0.966   8.77
 3.11 Intr +  79778  79888  111  1  0   84   94   139 0.996  13.76
 3.12 Intr +  80613  80704   92  2  2  113   66   101 0.998   8.27
 3.13 Intr +  81444  82058  615  0  0   29   79   666 0.348  50.34
 3.14 Intr +  82702  82952  251  1  2   45   44   164 0.329   3.86
 3.15 Intr +  85285  85427  143  2  2  105   13    73 0.115   0.65
 3.16 Intr +  88249  88301   53  0  2   90   83    26 0.048  -0.91
 3.17 Intr +  89941  90103  163  1  1   50   75   137 0.176   7.66
 3.18 Intr +  91444  91744  301  0  1   55   59   145 0.019   3.68
 3.19 Term +  95416  95894  479  2  2  101   48   232 0.821  14.52
 3.20 PlyA +  97707  97712    6                               1.05

 4.13 PlyA -  98180  98175    6                              -0.45
 4.12 Term - 100613 100467  147  2  0   90   44    81 0.671   0.82
 4.11 Intr - 101478 101324  155  1  2   62  101   100 0.960   7.57
 4.10 Intr - 105962 105902   61  2  1   79  101    50 0.982   2.79
 4.09 Intr - 110280 110107  174  0  0   56  105   215 0.931  19.21
 4.08 Intr - 111525 111391  135  0  0   67   90    32 0.589   1.14
 4.07 Intr - 113042 112935  108  2  0   66   32   127 0.463   4.46
 4.06 Intr - 113398 113243  156  1  0   72   88   186 0.996  16.29
 4.05 Intr - 117899 117752  148  1  1   82   97   191 0.998  18.72
 4.04 Intr - 118999 118767  233  1  2   45   72   201 0.999   9.85
 4.03 Intr - 122853 122753  101  1  2   93  105    64 0.994   7.51
 4.02 Intr - 123332 123242   91  2  1   58   91    48 0.996   0.75
 4.01 Init - 124309 124196  114  1  0   91   84   118 0.906  12.24
 4.00 Prom - 137441 137402   40                              -4.65

 5.10 PlyA - 137503 137498    6                               1.05
 5.09 Term - 144468 144345  124  2  1  105   43   109 0.343   4.98
 5.08 Intr - 167721 167591  131  0  2   73   77    47 0.003   0.67
 5.07 Intr - 194242 194113  130  0  1   96   64   143 0.844  12.48
 5.06 Intr - 195563 195416  148  0  1  131  108   126 0.992  17.27
 5.05 Intr - 202671 202549  123  1  0  126  101    50 0.991   9.74
 5.04 Intr - 211433 211328  106  2  1   93   91    79 0.954   7.57
 5.03 Intr - 214688 214655   34  1  1   85   91    -3 0.402  -2.99
 5.02 Intr - 218583 218495   89  0  2  103  111    76 0.816   9.25
 5.01 Intr - 222226 222168   59  2  2   70   60    75 0.292   0.58

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  29254  28901  354  1  0   77   47   302 0.837  20.80
S.002 Init +  91306  91744  439  0  1   68   59   248 0.962  16.22


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:111642053_111866361|GENSCAN_predicted_peptide_1|74_aa
KNSSNRRQEKRRSKKMDSEKGNWHFRRKEDYFRERFLKLRCNEGLSSSQGGDQIGYRYER
AYCLAKKLSKDIKQ

>gi568815587r:111642053_111866361|GENSCAN_predicted_CDS_1|225_bp
aagaattcttccaacagaaggcaagaaaagagaagatccaagaagatggacagtgagaaa
gggaattggcattttcgtaggaaagaggactacttcagagagaggttcctaaaattgagg
tgtaatgaaggcttgtcttcctcacagggtggagatcagattggatacagatatgaacgt
gcatattgccttgcaaagaagctttctaaggacattaaacagtga

>gi568815587r:111642053_111866361|GENSCAN_predicted_peptide_2|319_aa
MLRPVVWGGITAIMVNQSLLSSFKLEVDPNIQAVCNQEKEQIKTLDKKFASFINKLWFLE
QQNKALETKWSLLQQQKMAGSNMDEMFESHINTLWWQLDTLEKENEFVFIKKDVDEAYMN
KAELESHLEGLTDEINFLKQLYEGDPGAAVPDLGHICGSVHGQQLLPGHGQHHHQVCGEL
AIKHTNAKLVELEAALQWANQDMVWELHEYQELMNINLALDIEITTYCKLLQGKESWLES
GMQNMSIHRKTTSGYSGGLSWAYRGLTSSGLNYGLGSSFGSGGGSGSFSCPSSSRDLIVK
KIKIHDGKLMSKSSDVPSK

>gi568815587r:111642053_111866361|GENSCAN_predicted_CDS_2|960_bp
atgctgaggccagtggtatgggggggcatcacagccattatggtaaaccagagcctgcta
agctcttttaagctggaagtggaccccaacatccaggccgtgtgtaaccaggagaaggag
cagatcaagacccttgacaagaagtttgcctccttcatcaacaagttgtggttcctggag
cagcagaacaaggcacttgagaccaagtggagcctcctgcagcagcagaagatggctggg
agcaacatggatgagatgttcgagagccacatcaacaccctttggtggcagctggacact
ctggagaaggaaaacgaatttgtcttcatcaagaaggatgtggatgaagcttacatgaac
aaagcagagctggagtctcacctggaagggttgactgatgagatcaacttcctcaagcag
ctgtatgaaggagatccaggagctgctgtcccagatcttggacacatctgtggttctgtc
catggacaacagctgctccctggacatggacagcatcatcaccaagtatgtggggagctg
gccattaagcacaccaatgccaagctggtggagctggaggccgccctgcaatgggccaat
caggacatggtgtgggagctgcatgagtaccaggagctcatgaacatcaatttagccctg
gacatcgagatcactacctactgcaagctgctgcagggcaaggaaagctggctggagtct
gggatgcagaatatgagtatccataggaagaccaccagtggctactcaggtgggctgagc
tgggcctataggggtctcacaagctctggtctcaactatggcctgggctctagctttggt
tctggtgggggttccggctccttcagctgccccagctcctccagggacctgattgtgaag
aagatcaagatccatgatgggaagctgatgtctaagtcctctgatgtcccgtccaagtga

>gi568815587r:111642053_111866361|GENSCAN_predicted_peptide_3|1330_aa
MKTQALSKTNYVRNSKDYLANHGRLNESEARRKFWQILSAVDYCHGRKIVHRDLKAENLL
LDNNMNIKIADFGFGNFFKSGELLATWCGSPPYAAPEVFEGQQYEGPQLDIWSMGVVLYV
LVCGALPFDGPTLPILRQRVLEGRFRIPYFMSEVEDTKINTLVQSHMSQANNPEVQGDSC
DFCNIVFSIDCEHLIRRMLVLDPSKRLTIAQIKEHKWMLIEVPVQRPVLYPQEQENEPSI
GEFNEQVLRLMHSLGIDQQKTIESLQNKSYNHFAAIYFLLVERLKSHRSSFPVEQRLDGR
QRRPSTIAEQTVAKAQTVGLPVTMHSPNMRLLRSALLPQASNVEAFSFPASGCQAEAAFM
EEECVDTPKVNGCLLDPVPPVLVRKGCQSLPSNMMETSIDEGLETEGEAEEDPAHAFEAF
QSTRSGQRRHTLSEVTNQLVVMPGAGKIFSMNDSPSLDSVDSEYDMGSVQRDLNFLEDNP
SLKDIMLANQPSPRMTSPFISLRPTNPAMQALSSQKREVHNRSPVSFREGRRASDTSLTQ
GIVAFRQHLQNLARTKGILELNKVQLLYEQIGPEADPNLAPAAPQLQDLASSCPQEEVSQ
QQESVSTLPASVHPQLSPRQSLETQYLQHRLQKPSLLSKAQNTCQLYCKEPPRSLEQQLQ
EHRLQQKRLFLQKQSQLQAYFNQMQIAESSYPQPSQQLPLPRQETPPPSQQAPPFSLTQP
LSPVLEPSSEQMQYSPFLSQYQEMQLQPLPSTSGPRAAPPLPTQLQQQQPPPPPPPPPPR
QPGAAPAPLQFSYQTCELPSAASPAPDYPTPCQYPVDGAQQSDLTGPDCPRSPGLQEAPS
SYDPLALSELPGLFDCEMLDAVDPQHNGNRLHLHSEAGDTPLQKVPWVAECQNILRTPEV
SHVELTGDPPPWRQGARNSRTHQEHQPWAREDRLFLQFLVDTAGLRAVGLQGKKKSVALS
SSDIKNSQVFKPYAGVSGWDRQEPKTEASPCLLCPFPTLKICSVKEIQVVRPFHHGWTLF
SSAAFVSRRLQQGGEGEQQGGLHPKPRASAQWMEPDSSACTSQVLHQDAGQVGWDSSGSS
SSLPKSEMPRVGLTDKSDPEETVHCHPRATHIVGGGTQWNGGKAHQALSSKHATHSSRSA
QPCLSLLSGIRQNCLPVATEPKCLAVPLCQQSTVGLGKWFLSARGTLGSPLSFTGNSSFL
SLCATTRDTDSGAVTVPDQGTSLPSPPVLPSQDALSCASRVGCPAAAYKYMGHWAEKAGA
AQGRAEVPFPRGPGKRHPIGPFGVHLAVPHILVTDGLQSPNHRKDLAPFRTHISLREQLW
RQKWLGFPTQ

>gi568815587r:111642053_111866361|GENSCAN_predicted_CDS_3|3993_bp
atgaaaactcaggctctttccaaaaccaactatgtcagaaactctaaggactatcttgct
aatcatggccggttaaatgagtctgaagccaggcgaaaattctggcaaatcctgtctgct
gttgattattgtcatggtcggaagattgtgcaccgtgacctcaaagctgaaaatctcctg
ctggataacaacatgaatatcaaaatagcagatttcggttttggaaatttctttaaaagt
ggtgaactgctggcaacatggtgtggcagccccccttatgcagccccagaagtctttgaa
gggcagcagtatgaaggaccacagctggacatctggagtatgggagttgttctttatgtc
cttgtctgtggagctctgccctttgatggaccgactcttccaattttgaggcagagggtt
ctggaaggaagattccggattccgtatttcatgtcagaagtagaggatacaaagattaac
acccttgtacaaagtcacatgagtcaagcaaataaccctgaagtgcaaggtgattcttgt
gacttttgtaacattgtgttttctatagattgcgagcaccttatccgaaggatgttggtc
ctagacccatccaaacggctaaccatagcccaaatcaaggagcataaatggatgctcata
gaagttcctgtccagagacctgttctctatccacaagagcaagaaaatgagccatccatc
ggggagtttaatgagcaggttctgcgactgatgcacagccttggaatagatcagcagaaa
accattgagtctttgcagaacaagagctataaccactttgctgccatttatttcttgttg
gtggagcgcctgaaatcacatcggagcagtttcccagtggagcagagacttgatggccgc
cagcgtcggcctagcaccattgctgagcaaacagttgccaaggcacagactgtggggctc
ccagtgaccatgcattcaccgaacatgaggctgctgcgatctgccctcctcccccaggca
tccaacgtggaggccttttcatttccagcatctggctgtcaggcggaagctgcattcatg
gaagaagagtgtgtggacactccaaaggtcaatggctgtctgcttgaccctgtgcctcct
gtcctggtgcggaagggatgccagtcactgcccagcaacatgatggagacctccattgac
gaagggctggagacagaaggagaggccgaggaagaccccgctcatgcctttgaggcattt
cagtccacacgcagcgggcagagacggcacactctgtcagaagtgaccaatcaactggtc
gtgatgcctggggcagggaaaattttctccatgaatgacagcccctcccttgacagtgtg
gactctgagtatgatatggggtctgttcagagggacctgaactttctggaagacaaccct
tcccttaaggacatcatgttagccaatcagccttcaccccgcatgacatctcccttcata
agcctgagacctaccaacccagccatgcaggctctgagctcccagaaacgagaggtccac
aacaggtctccagtgagcttcagagagggccgcagagcatcagatacctccctcacccag
ggaattgtagcatttagacaacatcttcagaatctggctagaaccaaaggaattctagag
ttgaacaaagtgcagttgttgtatgaacaaataggaccggaggcagaccctaacctggcg
ccggcggctcctcagctccaggaccttgctagcagctgccctcaggaagaagtttctcag
cagcaggaaagcgtctccactctccctgccagcgtgcatccccagctgtccccacggcag
agcctggagacccagtacctgcagcacagactccagaagcccagccttctgtcaaaggcc
cagaacacctgtcagctttattgcaaagaaccaccgcggagccttgagcagcagctgcag
gaacataggctccagcagaagcgactctttcttcagaagcagtctcaactgcaggcctat
tttaatcagatgcagatagcagagagctcctacccacagccaagtcagcagctgcccctt
ccccgccaggagactccaccgccttctcagcaggccccaccgttcagcctgacccagccc
ctgagccccgtcctggagccttcctccgagcagatgcaatacagccctttcctcagccag
taccaagagatgcagcttcagcccctgccctccacttccggtccccgggctgctcctcct
ctgcccacgcagctacagcagcagcagccgccaccgccaccaccccctccaccaccacga
cagccaggagctgccccagcccccttacagttctcctatcagacttgtgagctgccaagc
gctgcttcccctgcgccagactatcccactccctgtcagtatcctgtggatggagcccag
cagagcgacctaacggggccagactgtcccagaagcccaggactgcaagaggccccctcc
agctacgacccactagccctctctgagctacctggactctttgattgtgaaatgctagac
gctgtggatccacaacacaacggaaaccgccttcatctccattcggaagcaggtgacaca
ccccttcagaaggtgccctgggttgccgagtgtcagaatatactcaggactccagaggtg
tcacacgtggaactgacaggagacccgccaccgtggaggcagggggcaagaaactcaaga
acgcatcaagagcaccagccctgggccagggaagacaggctcttcctgcagtttctcgtg
gacactgctggcttgcgggcagtcggtctccagggaaagaaaaagtcagtggccctttct
tcctcagatatcaagaactcccaagtgtttaaaccgtatgctggagtcagtggttgggac
agacaggagcccaagactgaagccagcccttgcctcttgtgtcccttcccaactctgaag
atttgctcagtcaaggaaattcaagtggtgagacctttccaccatgggtggacactcttc
agttctgcagcctttgtgagtcgaaggctccagcagggtggggaaggagagcagcaggga
ggcctgcaccccaaacccagggcctctgcccagtggatggaaccagacagcagtgcctgc
acttcccaagttctccatcaagacgcaggacaggtcggctgggacagttctggctccagc
tcctcactccccaaaagtgaaatgccccgagtggggctgactgacaaatcagaccctgag
gagactgttcattgtcaccccagggccacccacatagttgggggtgggacacaatggaat
ggaggaaaagcccaccaagccctttcctccaagcacgccacacatagctcccggagcgca
cagccttgcctgtctcttctgtctgggatccgccagaactgccttccagtcgctacagag
cccaaatgcttagcagtgcccctgtgccagcaaagcactgtgggtcttgggaagtggttc
ttgtcagcccgagggacactgggttctccactgtccttcacaggaaattctagcttcctc
agcctttgtgccaccactagagacacagacagtggcgctgtaactgtccctgaccagggc
acatccctcccaagcccacctgtgcttcccagccaggatgccctcagttgtgccagcaga
gttgggtgtccagcagcagcctacaagtatatggggcactgggcagagaaagctggggca
gcccagggtcgtgctgaggtgcctttccctcggggccctggaaagcgccaccccatcggg
ccttttggtgtccacctggctgttccccacatcctggtcactgatggtctccagagcccc
aaccacaggaaagacctggctcctttcagaactcatatcagtttaagagaacaactctgg
agacagaaatggcttggctttccgacgcaatga

>gi568815587r:111642053_111866361|GENSCAN_predicted_peptide_4|540_aa
MAGASELGTGPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTR
SELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLENLATVEETVVRDKA
VESLRQISQEHTPVALEAYFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQ
QFRSLCSDDTPMVRRAAASKLGEFAKVLELDSVKSEIVPLFTSLASDEQDSVRLLAVEAC
VSIAQLLSQDDLETLVMPTLRQAAEDKSWRVRYMVADRFSELQKAMGPKITLNDLIPAFQ
NLLKDCEAEVRAAAAHKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLK
DECPDVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL
GVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPN
YLHRMTTLFCINALSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTK

>gi568815587r:111642053_111866361|GENSCAN_predicted_CDS_4|1623_bp
atggcgggcgcatcagagctcgggaccggcccaggagcagcgggtggagatggagatgat
tcgctatacccgatcgcggttttaatcgacgagctccgcaatgaagacgtgcagctccga
ctcaacagtattaagaagttatcaacaattgccctagcacttggagtagaaaggacccga
agtgaattgttgccatttcttacagatacaatttatgatgaagatgaggtactattagct
cttgctgagcagctgggaaatttcactggcctagtgggaggtcctgactttgcccactgt
ctgctgcctcctttggaaaatctggcaactgtggaagagactgttgttcgtgacaaggct
gtggagtccctgagacagatctcccaggagcatactcctgttgctctggaagcttatttt
gtacctctggtgaaacgcttagcaagtggggattggttcacctctcgcacatctgcatgt
ggtttgttcagcgtttgctatcccagggcatcaaatgctgttaaagcagaaatcagacag
caattccgttccttgtgctcagatgacacaccaatggtacgacgtgctgctgcttccaaa
ttgggtgaatttgcaaaagttttggaattagacagtgtgaaaagtgaaattgttccactg
ttcactagtctagcttcagatgaacaggattcagtgcgcctccttgctgtggaagcttgt
gtcagtattgcccagttattgtctcaggatgaccttgagactttggtgatgcctacactt
cgacaagcagcagaagataaatcttggcgcgttcgctatatggtggctgacagattttca
gagctccagaaagccatgggtcctaaaatcaccctaaatgacctcatccccgcctttcag
aacctacttaaagactgtgaagctgaagtccgggcagctgctgcccacaaagaattagta
tccgataccaatcaacatgtcaaatcggctctagcttctgtaattatgggattgtctact
attttgggcaaagaaaataccattgaacatcttctacctcttttcttagctcagttaaag
gatgagtgtcctgacgttcgtttgaatatcatctccaatttggattgtgtaaatgaagtg
attggaatccgtcagctctctcagtctctccttcctgccatagtggagctggcagaagat
gccaaatggagggtccgcctggccatcattgagtatatgccgctgctggcaggccagctg
ggtgtggaattctttgatgaaaagctgaattctttatgtatggcttggctcgtggaccat
gtatacgccatccgagaagctgccaccaacaacctcatgaaactagttcagaagtttggt
acagagtgggcccaaaatactattgttcccaaagtgttagtaatggcaaatgatcctaat
tacttgcatagaatgaccactttattctgcattaatgcactgtctgaggcctgtggtcag
gaaataactactaagcaaatgctgcccatcgtattaaaaatggcaggagaccaagtagca
aatgttcgcttcaatgtggccaaatctctacaaaagattggaccaattctagataccaag
taa

>gi568815587r:111642053_111866361|GENSCAN_predicted_peptide_5|314_aa
XATLEEPDMVHVRAGPVRGLGCVQEVWVARESNDASLLGSQHWHVLLIISVWYLNFLPVP
QVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWYFYLINGFLNFNVAFALAL
LVLPLTSLMEYLLQRFHGYHGPLDLYPEFYRIATDPTIHTVPEGRPVNVCVGKEWYRFPS
SFLLPDNWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNLEEPSRYIDISKCHYLV
DLDTMRETPREPKYSSNKEEWISLAYRPFLDASRSSKLLRAFYVPFLSDQYTVYVNYTIL
KPRKAKQIRKKSGG

>gi568815587r:111642053_111866361|GENSCAN_predicted_CDS_5|945_bp
ncggcaacgctggaggagccagacatggtgcacgtgagggccgggccagttcgtgggttg
ggctgtgtgcaagaagtttgggttgcacgtgagtcgaatgatgctagccttcttggttct
cagcactggcatgttttgctcatcatcagtgtgtggtaccttaatttcttacctgtacca
caggtgcctgtggtggtcattgacagctactattatgggaagttggtgattgcaccactc
aacattgttttgtataatgtctttactcctcatggacctgatctttatggtacagaaccc
tggtatttctatttaattaatggatttctgaatttcaatgtagcctttgctttggctctc
ctagtcctaccactgacttctcttatggaatacctgctgcagagatttcatggatatcac
gggccccttgatttgtatccagaattttaccgaattgctacagacccaaccatccacact
gtcccagaaggcagacctgtgaatgtctgtgtgggaaaagagtggtatcgatttcccagc
agcttccttcttcctgacaattggcagcttcagttcattccatcagagttcagaggtcag
ttaccaaaaccttttgcagaaggacctctggccacccggattgttcctactgacatgaat
gaccagaatctagaagagccatccagatatattgatatcagtaaatgccattatttagtg
gatttggacaccatgagagaaacaccccgggagccaaaatattcatccaataaagaagaa
tggatcagcttggcctatagaccattccttgatgcttctagatcttcaaagctgctgcgg
gcattctatgtccccttcctgtcagatcagtatacagtgtacgtaaactacaccatcctc
aaaccccggaaagcaaagcaaatcaggaagaaaagtggaggttag