Result of FASTA (ccds) for pF1KB4171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4171, 1151 aa
  1>>>pF1KB4171 1151 - 1151 aa - 1151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.3128+/-0.00134; mu= -20.5435+/- 0.082
 mean_var=654.2326+/-135.468, 0's: 0 Z-trim(115.9): 31  B-trim: 175 in 1/51
 Lambda= 0.050143
 statistics sampled from 16449 (16475) to 16449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.506), width:  16
 Scan time:  6.150

The best scores are:                                      opt bits E(32554)
CCDS55835.1 SMARCC2 gene_id:6601|Hs108|chr12       (1152) 7732 575.2 3.1e-163
CCDS81698.1 SMARCC2 gene_id:6601|Hs108|chr12       (1245) 7439 554.0 7.9e-157
CCDS8908.1 SMARCC2 gene_id:6601|Hs108|chr12        (1130) 7433 553.5 9.9e-157
CCDS8907.1 SMARCC2 gene_id:6601|Hs108|chr12        (1214) 3970 303.0 2.7e-81
CCDS2758.1 SMARCC1 gene_id:6599|Hs108|chr3         (1105) 2810 219.1 4.6e-56


>>CCDS55835.1 SMARCC2 gene_id:6601|Hs108|chr12            (1152 aa)
 initn: 4089 init1: 3971 opt: 7732  Z-score: 3044.1  bits: 575.2 E(32554): 3.1e-163
Smith-Waterman score: 7732; 99.9% identity (99.9% similar) in 1152 aa overlap (1-1151:1-1152)

               10        20        30        40        50        60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
              490       500       510       520       530       540

              550       560       570       580        590         
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPEL-TSASQQMLNFPDKGKEKP
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS55 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB4 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB4 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB4 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KB4 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
              790       800       810       820       830       840

     840       850       860       870       880       890         
pF1KB4 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
              850       860       870       880       890       900

     900       910       920       930       940       950         
pF1KB4 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
              910       920       930       940       950       960

     960       970       980       990      1000      1010         
pF1KB4 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
              970       980       990      1000      1010      1020

    1020      1030      1040      1050      1060      1070         
pF1KB4 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
             1030      1040      1050      1060      1070      1080

    1080      1090      1100      1110      1120      1130         
pF1KB4 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
             1090      1100      1110      1120      1130      1140

    1140      1150 
pF1KB4 SPGTVTPVPPPQ
       ::::::::::::
CCDS55 SPGTVTPVPPPQ
             1150  

>>CCDS81698.1 SMARCC2 gene_id:6601|Hs108|chr12            (1245 aa)
 initn: 7521 init1: 3971 opt: 7439  Z-score: 2929.0  bits: 554.0 E(32554): 7.9e-157
Smith-Waterman score: 7439; 97.0% identity (97.9% similar) in 1150 aa overlap (1-1149:1-1145)

               10        20        30        40        50        60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
              490       500       510       520       530       540

              550       560       570       580        590         
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPEL-TSASQQMLNFPDKGKEKP
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS81 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB4 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB4 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB4 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KB4 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
              790       800       810       820       830       840

     840       850       860       870       880       890         
pF1KB4 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
              850       860       870       880       890       900

     900       910       920       930       940       950         
pF1KB4 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
              910       920       930       940       950       960

     960       970       980       990      1000      1010         
pF1KB4 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
              970       980       990      1000      1010      1020

    1020      1030      1040      1050      1060      1070         
pF1KB4 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
             1030      1040      1050      1060      1070      1080

    1080      1090      1100      1110      1120      1130         
pF1KB4 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
       :::::::::::::::::::::::::...:  ..   :  .:   : : : . .:    : 
CCDS81 PFPNQQTPPSMMPGAVPGSGHPGVAGNAP--LGLPFG--MPPPPPPPAP-SIIPFGSLAD
             1090      1100        1110        1120       1130     

    1140      1150                                                 
pF1KB4 SPGTVTPVPPPQ                                                
       : .   :.::                                                  
CCDS81 SISINLPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLG
        1140      1150      1160      1170      1180      1190     

>>CCDS8908.1 SMARCC2 gene_id:6601|Hs108|chr12             (1130 aa)
 initn: 4251 init1: 3971 opt: 7433  Z-score: 2927.3  bits: 553.5 E(32554): 9.9e-157
Smith-Waterman score: 7539; 98.0% identity (98.0% similar) in 1152 aa overlap (1-1151:1-1130)

               10        20        30        40        50        60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
              490       500       510       520       530       540

              550       560       570       580        590         
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPEL-TSASQQMLNFPDKGKEKP
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS89 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
              550       560       570       580       590       600

     600       610       620       630       640       650         
pF1KB4 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
              610       620       630       640       650       660

     660       670       680       690       700       710         
pF1KB4 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
              670       680       690       700       710       720

     720       730       740       750       760       770         
pF1KB4 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
              730       740       750       760       770       780

     780       790       800       810       820       830         
pF1KB4 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RIEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKE
              790       800       810       820       830       840

     840       850       860       870       880       890         
pF1KB4 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
              850       860       870       880       890       900

     900       910       920       930       940       950         
pF1KB4 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
              910       920       930       940       950       960

     960       970       980       990      1000      1010         
pF1KB4 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVA
              970       980       990      1000      1010      1020

    1020      1030      1040      1050      1060      1070         
pF1KB4 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPS
             1030      1040      1050      1060      1070      1080

    1080      1090      1100      1110      1120      1130         
pF1KB4 PFPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAP
       :::::::::::::::::::::::::                      :::::::::::::
CCDS89 PFPNQQTPPSMMPGAVPGSGHPGVA----------------------DPGTPLPPDPTAP
             1090      1100                            1110        

    1140      1150 
pF1KB4 SPGTVTPVPPPQ
       ::::::::::::
CCDS89 SPGTVTPVPPPQ
     1120      1130

>>CCDS8907.1 SMARCC2 gene_id:6601|Hs108|chr12             (1214 aa)
 initn: 7305 init1: 3755 opt: 3970  Z-score: 1572.9  bits: 303.0 E(32554): 2.7e-81
Smith-Waterman score: 7176; 94.4% identity (95.3% similar) in 1149 aa overlap (1-1149:1-1114)

               10        20        30        40        50        60
pF1KB4 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELTSASQQMLNFPDKGKEKPT
       ::::::::::                               :::::::::::::::::::
CCDS89 LVPLQPKTPQQ------------------------------TSASQQMLNFPDKGKEKPT
              550                                     560       570

              610       620       630       640       650       660
pF1KB4 DMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
              580       590       600       610       620       630

              670       680       690       700       710       720
pF1KB4 TQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS
              640       650       660       670       680       690

              730       740       750       760       770       780
pF1KB4 AAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 AAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPER
              700       710       720       730       740       750

              790       800       810       820       830       840
pF1KB4 IEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 IEESGNDEARVEGQATDEKKEPKEPREGGGAIEEEAKEKTSEAPKKDEEKGKEGDSEKES
              760       770       780       790       800       810

              850       860       870       880       890       900
pF1KB4 EKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAAA
              820       830       840       850       860       870

              910       920       930       940       950       960
pF1KB4 VKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD
              880       890       900       910       920       930

              970       980       990      1000      1010      1020
pF1KB4 RQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAP
              940       950       960       970       980       990

             1030      1040      1050      1060      1070      1080
pF1KB4 ASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 ASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSP
             1000      1010      1020      1030      1040      1050

             1090      1100      1110      1120      1130      1140
pF1KB4 FPNQQTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPS
       ::::::::::::::::::::::::...:  ..   :  .:   : : : . .:    : :
CCDS89 FPNQQTPPSMMPGAVPGSGHPGVAGNAP--LGLPFG--MPPPPPPPAP-SIIPFGSLADS
             1060      1070        1080        1090       1100     

             1150                                                  
pF1KB4 PGTVTPVPPPQ                                                 
        .   :.::                                                   
CCDS89 ISINLPAPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGS
        1110      1120      1130      1140      1150      1160     

>>CCDS2758.1 SMARCC1 gene_id:6599|Hs108|chr3              (1105 aa)
 initn: 2813 init1: 1791 opt: 2810  Z-score: 1120.0  bits: 219.1 E(32554): 4.6e-56
Smith-Waterman score: 4518; 61.3% identity (79.6% similar) in 1161 aa overlap (1-1150:28-1094)

                                           10        20        30  
pF1KB4                            MAV-RKKDGGPNVKYYEAADTVTQFDNVRLWLG
                                  .:: :.::::: .:..:. .::.:.:.::.:::
CCDS27 MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWLG
               10        20        30        40        50        60

             40        50        60        70        80        90  
pF1KB4 KNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCH
       :.::::..:. ::::.:..::::::::::..:::::.:  .:::: :::.::::::.:::
CCDS27 KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGALCH
               70        80        90       100       110       120

            100       110       120       130       140       150  
pF1KB4 ILAAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKL
       ::.::::.:..:::::.:.::::::::::::::.:::.:::::::.::::.: :.:. ::
CCDS27 ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKL
              130       140       150       160       170       180

            160       170       180       190       200       210  
pF1KB4 LGKLKDIIKRHQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSY
        .:::::::::::: :..:..::: .::  .. ..:::.::::...::::.:::.:::::
CCDS27 ANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEWLRPVMRKEKQVLVHWGFYPDSY
              190       200       210       220       230       240

            220       230       240       250       260       270  
pF1KB4 DTWIPASEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVNDDKNPVSRRKKI
       :::. .....: .:: : :::: :::.::::::: ::::::::::::.....::: :..:
CCDS27 DTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIFNEWMNEEDYEVDENRKPVSFRQRI
              250       260       270       280       290       300

            280       290        300         310       320         
pF1KB4 SAKTLTDEVNSPDSDRRDKKGG-NYKKRKRSPSPSP-TP-EAKKKNAKKGPSTPYTKSKR
       :.:.  . : ::.  :::.:.. : .:::.:::: : :: :..::..::: .. : : . 
CCDS27 STKN-EEPVRSPE--RRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRS
               310         320       330       340       350       

     330       340       350       360       370       380         
pF1KB4 GHREEEQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESME
        ..:.:::::::::..:.::::.:::.:::.:: :::::..::::::..:::::..:.. 
CCDS27 QKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLKKDSENTPVKGGTVADLDEQDEETVT
       360       370       380       390       400       410       

     390       400       410       420       430       440         
pF1KB4 TTGKDEDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEF
       . :: :::. .  ::.:... :: ::::::::.::::::::.::::: .:.:::::::::
CCDS27 AGGK-EDEDPA--KGDQSRSVDLGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEF
       420          430       440       450       460       470    

     450       460       470       480       490       500         
pF1KB4 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGL
       :::::::::::::::::::::::::::::::::::::::::.:::::.::::::::::::
CCDS27 FNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGL
          480       490       500       510       520       530    

     510       520       530       540       550       560         
pF1KB4 INYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQGRQVDADTKAGRKGKELDD
       .::::: ::::  :::::: ::.::::::::::::. ..::                   
CCDS27 VNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQ-------------------
          540       550       560       570                        

     570       580       590       600       610       620         
pF1KB4 LVPETAKGKPELTSASQQMLNFPDKGKEKPTDMQNFGLRTDMYTKKNVPSKSKAAASATR
        ::           :.:::::::.:.::::.:.::::::::.:.::.. .:::.: :: :
CCDS27 -VP-----------AAQQMLNFPEKNKEKPVDLQNFGLRTDIYSKKTL-AKSKGA-SAGR
                     580       590       600       610         620 

     630       640       650       660       670       680         
pF1KB4 EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::
CCDS27 EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPL
             630       640       650       660       670       680 

     690       700       710       720       730       740         
pF1KB4 AYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKV
       ::::.::::::::::::::::::::::::::::::.::::::...::::  ::::::.::
CCDS27 AYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKV
             690       700       710       720       730       740 

     750       760       770       780       790       800         
pF1KB4 EEAAKVTGKADPAFGLESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREGG
       .:::...::.::..::::: ::::  ::::..:  : .: ..:..   .. :  : .   
CCDS27 QEAARASGKVDPTYGLESSCIAGTGPDEPEKLE--GAEEEKMEADPDGQQPEKAENK---
             750       760       770         780       790         

     810       820       830       840       850       860         
pF1KB4 GAIEEEAKEKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVV
         .:.:. :          .:...:..::.::: . :  :. . ..: :: .:.  ::..
CCDS27 --VENETDEG---------DKAQDGENEKNSEK-EQDSEVSEDTKSEEKETEEN--KELT
          800                810        820       830         840  

     870            880       890       900       910       920    
pF1KB4 ESEGER-----KTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVET
       ..  ::     : :::..:.:::..::::::::.::.:::::::::::::::::::::::
CCDS27 DTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVET
            850       860       870       880       890       900  

          930       940       950       960       970       980    
pF1KB4 QMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQM
       ::::::::::::::::::::::.:::: ::::::..:: ::::::::::.:::::  ::.
CCDS27 QMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQ
            910       920       930       940       950       960  

          990      1000      1010      1020      1030      1040    
pF1KB4 HQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIG
       : :. :       :.  . : :::: :                   :  : .  :   . 
CCDS27 HGQNPQQAHQ-HSGGPGLAPLGAAGHP-------------------GMMPHQQPPPYPLM
            970        980                          990      1000  

         1050      1060      1070      1080      1090      1100    
pF1KB4 QAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVA
       .       .:. :   :::: .: :   ::    : .:.:. :  :.: .: .. ::. .
CCDS27 H-------HQMPPPHPPQPGQIP-G---PG----SMMPGQHMPGRMIP-TVAANIHPSGS
                  1010          1020          1030       1040      

         1110      1120      1130        1140      1150           
pF1KB4 AQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTA--PSPGTVTPVPPPQ          
       . .:  .  . ::.:    ::  :.   :: :    : :  .  ::::           
CCDS27 GPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQPPPPPPADGVPPPPAPGPPASAAP
       1050      1060      1070      1080      1090      1100     




1151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:31:04 2016 done: Thu Nov  3 21:31:05 2016
 Total Scan time:  6.150 Total Display time:  0.290

Function used was FASTA [36.3.4 Apr, 2011]
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