Result of FASTA (omim) for
pF1KB4159
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4159, 145 aa
1>>>pF1KB4159 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7121+/-0.00039; mu= 10.2825+/- 0.024
mean_var=132.3331+/-30.548, 0's: 0 Z-trim(115.9): 316 B-trim: 1142 in 1/49
Lambda= 0.111491
statistics sampled from 26192 (26633) to 26192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.312), width: 16
Scan time: 4.780
The best scores are: opt bits E(85289)
NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 1052 179.9 1.3e-45
XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 1052 179.9 1.3e-45
XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 1052 179.9 1.3e-45
NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 1052 179.9 1.3e-45
NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 1052 179.9 1.3e-45
XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 1052 179.9 1.3e-45
XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 1052 179.9 1.3e-45
NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 1052 179.9 1.3e-45
NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 1052 179.9 1.4e-45
NP_001230541 (OMIM: 180386) LIM domain only protei ( 163) 1052 179.9 1.4e-45
XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 948 163.1 1.4e-40
XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 948 163.1 1.4e-40
NP_001257357 (OMIM: 186921) rhombotin-1 isoform b ( 155) 948 163.2 1.5e-40
NP_002306 (OMIM: 186921) rhombotin-1 isoform a [Ho ( 156) 948 163.2 1.5e-40
XP_006718291 (OMIM: 186921) PREDICTED: rhombotin-1 ( 193) 948 163.3 1.7e-40
XP_016873219 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
NP_001135788 (OMIM: 180385) rhombotin-2 isoform 2 ( 158) 565 101.6 5.2e-22
XP_016873217 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
XP_005252978 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
XP_016873218 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
XP_016873222 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
NP_001135787 (OMIM: 180385) rhombotin-2 isoform 2 ( 158) 565 101.6 5.2e-22
XP_016873216 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
XP_016873221 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
XP_016873220 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 565 101.6 5.2e-22
NP_005565 (OMIM: 180385) rhombotin-2 isoform 1 [Ho ( 227) 565 101.8 6.5e-22
XP_016875132 (OMIM: 180386) PREDICTED: LIM domain ( 125) 546 98.4 3.7e-21
NP_001230542 (OMIM: 180386) LIM domain only protei ( 167) 546 98.5 4.5e-21
XP_005271348 (OMIM: 603129) PREDICTED: LIM domain ( 165) 539 97.4 9.7e-21
NP_006760 (OMIM: 603129) LIM domain transcription ( 165) 539 97.4 9.7e-21
XP_011518402 (OMIM: 186921) PREDICTED: rhombotin-1 ( 122) 476 87.1 9e-18
XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 451 83.6 2.8e-16
XP_016857338 (OMIM: 606066) PREDICTED: LIM/homeobo ( 378) 451 83.7 3e-16
NP_001014434 (OMIM: 606066) LIM/homeobox protein L ( 388) 451 83.7 3e-16
NP_064589 (OMIM: 606066) LIM/homeobox protein Lhx9 ( 397) 451 83.7 3.1e-16
XP_011508083 (OMIM: 606066) PREDICTED: LIM/homeobo ( 403) 451 83.7 3.1e-16
XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 425 79.4 4.8e-15
NP_004780 (OMIM: 603759) LIM/homeobox protein Lhx2 ( 406) 425 79.5 5.7e-15
NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 424 79.4 6.2e-15
XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 412 77.4 2.3e-14
XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 412 77.4 2.3e-14
NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 412 77.4 2.4e-14
NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 412 77.4 2.4e-14
XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 378 71.8 8.5e-13
NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 378 72.0 1e-12
NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 378 72.0 1e-12
NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 377 71.8 1.1e-12
XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 377 72.0 1.4e-12
NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 373 71.2 1.8e-12
NP_001167618 (OMIM: 161200,602575) LIM homeobox tr ( 402) 373 71.2 1.9e-12
>>NP_001230538 (OMIM: 180386) LIM domain only protein 3 (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
NP_001 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>XP_011519064 (OMIM: 180386) PREDICTED: LIM domain only (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
XP_011 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>XP_006719173 (OMIM: 180386) PREDICTED: LIM domain only (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
XP_006 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>NP_001230539 (OMIM: 180386) LIM domain only protein 3 (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
NP_001 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>NP_061110 (OMIM: 180386) LIM domain only protein 3 iso (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
NP_061 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>XP_006719174 (OMIM: 180386) PREDICTED: LIM domain only (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
XP_006 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>XP_011519065 (OMIM: 180386) PREDICTED: LIM domain only (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
XP_011 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>NP_001001395 (OMIM: 180386) LIM domain only protein 3 (145 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.9 bits: 179.9 E(85289): 1.3e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL
70 80 90 100 110 120
130 140
pF1KB4 KNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::
NP_001 KNNMILCQTDYEEGLMKEGYAPQVR
130 140
>>NP_001230540 (OMIM: 180386) LIM domain only protein 3 (156 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.6 bits: 179.9 E(85289): 1.4e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:12-156)
10 20 30 40
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN
70 80 90 100 110 120
110 120 130 140
pF1KB4 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
::::::::::::::::::::::::::::::::::::
NP_001 QRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150
>>NP_001230541 (OMIM: 180386) LIM domain only protein 3 (163 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 939.3 bits: 179.9 E(85289): 1.4e-45
Smith-Waterman score: 1052; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:19-163)
10 20 30 40
pF1KB4 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
::::::::::::::::::::::::::::::::::::::::::
NP_001 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
70 80 90 100 110 120
110 120 130 140
pF1KB4 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
130 140 150 160
145 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:30:24 2016 done: Thu Nov 3 21:30:25 2016
Total Scan time: 4.780 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]