Result of FASTA (ccds) for pF1KB3715
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3715, 208 aa
  1>>>pF1KB3715 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0184+/-0.000905; mu= 15.2589+/- 0.055
 mean_var=79.4804+/-15.745, 0's: 0 Z-trim(106.8): 213  B-trim: 0 in 0/53
 Lambda= 0.143861
 statistics sampled from 8944 (9178) to 8944 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.282), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3          ( 208) 1348 289.1 1.3e-78
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11          ( 208) 1257 270.2 6.4e-73
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11          ( 208) 1246 267.9 3.1e-72
CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2         ( 254) 1130 243.9 6.3e-65
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2       ( 254) 1124 242.7 1.5e-64
CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11         ( 175) 1037 224.5 3.1e-59
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX        ( 221)  829 181.4 3.7e-46
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3           ( 215)  559 125.4 2.7e-29
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17         ( 216)  556 124.7 4.1e-29
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17         ( 249)  556 124.8 4.5e-29
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12          ( 215)  522 117.7 5.4e-27
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3        ( 212)  504 113.9 7.2e-26
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15        ( 207)  490 111.0 5.3e-25
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19         ( 219)  490 111.1 5.5e-25
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5         ( 227)  489 110.9 6.5e-25
CCDS75442.1 RAB44 gene_id:401258|Hs108|chr6        (1021)  496 112.9 7.1e-25
CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18        ( 195)  486 110.2   9e-25
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2          ( 200)  485 110.0 1.1e-24
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19         ( 220)  485 110.0 1.1e-24
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8           ( 212)  483 109.6 1.5e-24
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19         ( 207)  482 109.4 1.7e-24
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20       ( 194)  478 108.5 2.8e-24
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11        ( 201)  474 107.7 5.2e-24
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17       ( 216)  473 107.5 6.3e-24
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14         ( 216)  468 106.5 1.3e-23
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1            ( 219)  468 106.5 1.3e-23
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1           ( 203)  467 106.2 1.4e-23
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2          ( 205)  464 105.6 2.2e-23
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17       ( 228)  461 105.1 3.7e-23
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17       ( 196)  460 104.8 3.8e-23
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16        ( 256)  461 105.1   4e-23
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17       ( 223)  460 104.8 4.2e-23
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10         ( 206)  458 104.4 5.3e-23
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9          ( 215)  453 103.4 1.1e-22
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7        ( 217)  452 103.2 1.3e-22
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2          ( 212)  451 102.9 1.5e-22
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12         ( 225)  449 102.6   2e-22
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16        ( 190)  442 101.0   5e-22
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11         ( 203)  439 100.4   8e-22
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18       ( 244)  436 99.9 1.4e-21
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3           ( 207)  434 99.4 1.7e-21
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14       ( 212)  434 99.4 1.7e-21
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19        ( 213)  432 99.0 2.3e-21
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12      ( 731)  437 100.5 2.7e-21
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX       ( 213)  430 98.6   3e-21
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12        ( 201)  427 97.9 4.5e-21
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19        ( 218)  426 97.8 5.5e-21
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15        ( 216)  423 97.1 8.4e-21
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1          ( 218)  420 96.5 1.3e-20
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11        ( 217)  417 95.9   2e-20


>>CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3               (208 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1524.7  bits: 289.1 E(32554): 1.3e-78
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB3 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
              130       140       150       160       170       180

              190       200        
pF1KB3 QEKSKEGMIDIKLDKPQEPPASEGGCSC
       ::::::::::::::::::::::::::::
CCDS30 QEKSKEGMIDIKLDKPQEPPASEGGCSC
              190       200        

>>CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11               (208 aa)
 initn: 1257 init1: 1257 opt: 1257  Z-score: 1422.7  bits: 270.2 E(32554): 6.4e-73
Smith-Waterman score: 1257; 90.9% identity (99.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB3 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
       :::::::::::::::::::::::::::::::::::::.::::::.:::::::::::::::
CCDS82 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
       :::::::::::::::..:::::..::::.:::::::::.::::::::::::.::::::..
CCDS82 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
              130       140       150       160       170       180

              190       200        
pF1KB3 QEKSKEGMIDIKLDKPQEPPASEGGCSC
       :..:.: ::::::.:::: :.:::::::
CCDS82 QDRSREDMIDIKLEKPQEQPVSEGGCSC
              190       200        

>>CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11               (208 aa)
 initn: 1246 init1: 1246 opt: 1246  Z-score: 1410.3  bits: 267.9 E(32554): 3.1e-72
Smith-Waterman score: 1246; 89.4% identity (99.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB3 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
       :.::::::::::::::::::::::::..:::::::::.::::::.:::::::::::::::
CCDS82 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
       :::::::::::::::..:::::..::::.:::::::::.::::::::::::.::::::..
CCDS82 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
              130       140       150       160       170       180

              190       200        
pF1KB3 QEKSKEGMIDIKLDKPQEPPASEGGCSC
       :..:.: ::::::.:::: :.:::::::
CCDS82 QDRSREDMIDIKLEKPQEQPVSEGGCSC
              190       200        

>>CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2              (254 aa)
 initn: 1130 init1: 1130 opt: 1130  Z-score: 1279.1  bits: 243.9 E(32554): 6.3e-65
Smith-Waterman score: 1130; 82.2% identity (93.3% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB3 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
       ::::::::::::::::::::::::.:::::::: :::::::::: :::::::::::::: 
CCDS46 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
       :. :.:::::::::.::::: :::::..:::::::::.::::::.:::::::::::::::
CCDS46 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
       : ::::.::::::::...::::..:: :.: :::: ::.::::::::::::.::::::..
CCDS46 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST
              130       140       150       160       170       180

              190       200                                        
pF1KB3 QEKSKEGMIDIKLDKPQEPPASEGGCSC                                
       :. :.: : ::::.::::  .:::::::                                
CCDS46 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
              190       200       210       220       230       240

>>CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2            (254 aa)
 initn: 1124 init1: 1124 opt: 1124  Z-score: 1272.4  bits: 242.7 E(32554): 1.5e-64
Smith-Waterman score: 1124; 82.7% identity (92.8% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB3 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
       ::::::::::::::::::::::::.:::::::: :::::::::: :::::::::::::: 
CCDS82 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
       :. :.:::::::::.::::: :::::..:::::::::.::::::.::::::::: :::::
CCDS82 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTEGGSDVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
       : :::::::::::::..:::::..:: :.: :::: ::.::::::::::::.::::::..
CCDS82 ITLVGNKTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST
              130       140       150       160       170       180

              190       200                                        
pF1KB3 QEKSKEGMIDIKLDKPQEPPASEGGCSC                                
       :. :.: : ::::.::::  .:::::::                                
CCDS82 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
              190       200       210       220       230       240

>>CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11              (175 aa)
 initn: 1037 init1: 1037 opt: 1037  Z-score: 1176.9  bits: 224.5 E(32554): 3.1e-59
Smith-Waterman score: 1037; 88.0% identity (98.9% similar) in 175 aa overlap (34-208:1-175)

            10        20        30        40        50        60   
pF1KB3 GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR
                                     ::::::::::::::::::::::::::::.:
CCDS58                               MYDSFDNTYQATIGIDFLSKTMYLEDRTIR
                                             10        20        30

            70        80        90       100       110       120   
pF1KB3 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML
       :::::::::::::::::::::::..:::::::::.::::::.::::::::::::::::::
CCDS58 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML
               40        50        60        70        80        90

           130       140       150       160       170       180   
pF1KB3 VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEK
       ::::::::::::..:::::..::::.:::::::::.::::::::::::.::::::..:..
CCDS58 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDR
              100       110       120       130       140       150

           190       200        
pF1KB3 SKEGMIDIKLDKPQEPPASEGGCSC
       :.: ::::::.:::: :.:::::::
CCDS58 SREDMIDIKLEKPQEQPVSEGGCSC
              160       170     

>>CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX             (221 aa)
 initn: 822 init1: 762 opt: 829  Z-score: 942.2  bits: 181.4 E(32554): 3.7e-46
Smith-Waterman score: 829; 65.2% identity (85.0% similar) in 207 aa overlap (1-198:11-214)

                                  10        20        30        40 
pF1KB3           MSAGGDFG---------NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT
                 : ::: ::         . : : ::.:::::: ::::.:.::::.::  .
CCDS35 MSAFGHDEAWMEAGG-FGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCA
               10         20        30        40         50        

              50        60        70        80        90       100 
pF1KB3 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSF
        :::.:::::::::::::. :.::::::::::::.:::::::::::.:::::::::.:::
CCDS35 CQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSF
       60        70        80        90       100       110        

             110       120       130       140       150       160 
pF1KB3 QQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGY
       ..:.::.. ::.:::.::.:::.::: :: .:::.: :.::.....:.::::::::::::
CCDS35 KETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGY
      120       130       140       150       160       170        

             170       180       190       200        
pF1KB3 NVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC
       :::.::::::::: . .. .   ::: ..:.:.. .:          
CCDS35 NVKKLFRRVASALLSTRT-SPPPKEGTVEIELESFEESGNRSYC   
      180       190        200       210       220    

>>CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3                (215 aa)
 initn: 563 init1: 543 opt: 559  Z-score: 639.5  bits: 125.4 E(32554): 2.7e-29
Smith-Waterman score: 559; 42.2% identity (74.3% similar) in 206 aa overlap (4-207:11-214)

                      10        20        30        40        50   
pF1KB3        MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK
                 : . :: . .::::.:::..:::.::. ::.  .: .  ..:::  ::..
CCDS26 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB3 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRT
       :. :.: ::....::::::::..:: : : : . .:.::::::: .:: ....:. ... 
CCDS26 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB3 ERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASA
       . . ...: : :::.:::.:: . ..:... : . :..:.::::::..::...:  .:. 
CCDS26 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK
              130       140       150       160       170       180

             180       190       200        
pF1KB3 LPGME--NVQEKSKEGMIDIKLDKPQEPPASEGGCSC
       ::  :  :   .: .:   . : .: .:  ..  :: 
CCDS26 LPKNEPQNPGANSARGR-GVDLTEPTQPTRNQC-CSN
              190        200       210      

>>CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17              (216 aa)
 initn: 554 init1: 537 opt: 556  Z-score: 636.2  bits: 124.7 E(32554): 4.1e-29
Smith-Waterman score: 556; 41.5% identity (74.1% similar) in 205 aa overlap (4-208:12-214)

                       10        20        30        40        50  
pF1KB3         MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS
                  :   :: . .::::.:::..:::.::. ::.  .: .  ..:::  ::.
CCDS11 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB3 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVR
       .:. :.: ::....::::::::..:: : : : . .:.::::::: ..: ....:. ...
CCDS11 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB3 TERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAS
        . . ...: :.:::.:::.:: . ..:..  : . :..:.::::::..::...:  .:.
CCDS11 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
              130       140       150       160       170       180

            180       190       200          
pF1KB3 ALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC  
        ::  :  .  .  :  .  .:  .. :::.. : :  
CCDS11 KLPKNEPQNATGAPGR-NRGVDLQENNPASRSQC-CSN
              190        200       210       

>>CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17              (249 aa)
 initn: 554 init1: 537 opt: 556  Z-score: 635.4  bits: 124.8 E(32554): 4.5e-29
Smith-Waterman score: 556; 41.5% identity (74.1% similar) in 205 aa overlap (4-208:45-247)

                                          10        20        30   
pF1KB3                            MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRF
                                     :   :: . .::::.:::..:::.::. ::
CCDS58 LHSTSPHPHALWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRF
           20        30        40        50        60        70    

            40        50        60        70        80        90   
pF1KB3 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY
       .  .: .  ..:::  ::..:. :.: ::....::::::::..:: : : : . .:.:::
CCDS58 VKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVY
           80        90       100       110       120       130    

           100       110       120       130       140       150   
pF1KB3 DITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFI
       :::: ..: ....:. ... . . ...: :.:::.:::.:: . ..:..  : . :..:.
CCDS58 DITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFM
          140       150       160       170       180       190    

           160       170       180       190       200          
pF1KB3 ETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC  
       ::::::..::...:  .:. ::  :  .  .  :  .  .:  .. :::.. : :  
CCDS58 ETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR-NRGVDLQENNPASRSQC-CSN
          200       210       220        230       240          




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:10:11 2016 done: Thu Nov  3 21:10:11 2016
 Total Scan time:  1.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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