GENSCAN 1.0	Date run:  3-Nov-116	Time: 20:58:27

Sequence gi568815597f:40638844_40870825 : 231982 bp : 48.40% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   2916   3206  291  2  0  105   38   184 0.968   8.76
 1.02 PlyA +   3279   3284    6                               1.05

 2.07 PlyA -   4287   4282    6                               1.05
 2.06 Term -  13807  13759   49  0  1  100   47    64 0.062   0.28
 2.05 Intr -  21411  21291  121  1  1  111   19    94 0.046   4.35
 2.04 Intr -  24292  24130  163  1  1   52  101    21 0.013  -0.65
 2.03 Intr -  30616  30584   33  1  0  101   92    12 0.011   1.32
 2.02 Intr -  41149  41082   68  2  2   75  103    38 0.098   2.62
 2.01 Init -  53166  53118   49  0  1  101   53   110 0.186   7.92
 2.00 Prom -  67090  67051   40                              -4.36

 3.00 Prom +  68348  68387   40                              -3.46
 3.01 Init +  91712  91763   52  1  1   40  115    40 0.484   3.22
 3.02 Intr +  99993 100105  113  1  2   77   65   127 0.461   9.40
 3.03 Intr + 108691 108762   72  0  0   96   63   102 0.993   8.10
 3.04 Intr + 110730 110843  114  2  0   73   67    82 0.972   5.24
 3.05 Intr + 114308 114403   96  1  0  119   99   137 0.999  18.11
 3.06 Intr + 119278 119451  174  0  0   91   62   207 0.820  18.54
 3.07 Intr + 124045 124203  159  0  0   98  117   168 0.861  20.88
 3.08 Intr + 127753 127860  108  0  0   93   91   122 0.997  13.48
 3.09 Intr + 130513 130572   60  0  0   85   91    71 0.959   6.03
 3.10 Intr + 131866 131970  105  0  0  116   60   129 0.790  13.31
 3.11 Term + 133321 133605  285  0  0   50   45   164 0.607   3.70
 3.12 PlyA + 134123 134128    6                               1.05

 4.00 Prom + 134298 134337   40                              -5.96
 4.01 Init + 145251 145564  314  2  2   77   84   471 0.903  40.40
 4.02 Intr + 170343 170517  175  0  1  131  -13    90 0.034   3.14
 4.03 Intr + 177484 177638  155  0  2   88   96   -17 0.274  -2.03
 4.04 Intr + 178422 178512   91  0  1   80  111   162 0.932  17.70
 4.05 Intr + 179321 179447  127  1  1   65   20   213 0.999  12.45
 4.06 Intr + 179662 179837  176  2  2  100  100   462 0.999  48.26
 4.07 Intr + 180504 180629  126  2  0  110   86   272 0.997  30.08
 4.08 Intr + 181032 181142  111  2  0   94   78    78 0.995   7.98
 4.09 Intr + 181322 181417   96  1  0   86   87   194 0.975  19.31
 4.10 Intr + 182693 182728   36  1  0  107   74    53 0.926   4.26
 4.11 Intr + 183471 183559   89  2  2   52   96    59 0.972   1.87
 4.12 Intr + 185254 185415  162  1  0   94   97   134 0.985  13.99
 4.13 Intr + 192241 192461  221  1  2   46   98   240 0.408  18.75
 4.14 Intr + 194171 194270  100  0  1   83  110   206 0.956  21.47
 4.15 Intr + 196124 196255  132  2  0  108   72   270 0.999  27.16
 4.16 Intr + 198822 198951  130  0  1   91  109   180 0.997  21.10
 4.17 Intr + 199468 199659  192  0  0   97   57   384 0.986  35.89
 4.18 Intr + 199871 200051  181  1  1   71  100   108 0.987   9.74
 4.19 Intr + 201410 201553  144  0  0   80   21    78 0.122   0.55
 4.20 Term + 207088 207125   38  2  2  113   35    20 0.017  -3.30
 4.21 PlyA + 208166 208171    6                               1.05

 5.07 PlyA - 208833 208828    6                               1.05
 5.06 Term - 209593 209475  119  2  2   53   50    76 0.213  -1.00
 5.05 Intr - 209983 209954   30  2  0  139   94     6 0.897   4.40
 5.04 Intr - 218316 218219   98  2  2  -61   71   320 0.832  15.05
 5.03 Intr - 219052 218964   89  1  2   49   59    40 0.589  -4.03
 5.02 Intr - 223301 222742  560  0  2  129   49   838 0.413  76.55
 5.01 Intr - 231238 231178   61  1  1  120  103   -12 0.432   1.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  19277  19395  119  1  2   84  100    79 0.852   8.37


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:40638844_40870825|GENSCAN_predicted_peptide_1|96_aa
MATILAPRLLRRFLAVVVPAPPPACWDPQISPLMLELRTTFLEAPDEAGPGSPLNMVPGV
AGPQAALKMGRKQKDPTSDLDESTAVPPLPSCVTLG

>gi568815597f:40638844_40870825|GENSCAN_predicted_CDS_1|291_bp
atggccaccatcttggcacccaggctgctccgccgcttcttggcggtggtggtcccagcc
ccgcccccggcttgctgggatccgcagatttcaccgctaatgctggagctccgcaccaca
ttcctggaggccccagatgaggcaggacctggctccccgttaaacatggtccccggggtg
gcagggcctcaggcagctctgaagatgggcaggaaacaaaaggatcccacatcagacctg
gatgaatctactgcagtcccaccacttcctagctgcgtgaccttgggctag

>gi568815597f:40638844_40870825|GENSCAN_predicted_peptide_2|160_aa
MAAGRTDRATAAAARGNNRYPEEYKPNQLCWSSKQWLQHNPQHLQKAWIKGRSDFYTVLT
DSGAVSYTGISLTSQKSFTSWGVCELKAEVRNKCSLVGGELAGNGPRFISGIAVLPPGQA
RKLKVLLDTPLFPSHTPITSPQQALCTYLLSNCAAVFASL

>gi568815597f:40638844_40870825|GENSCAN_predicted_CDS_2|483_bp
atggcggcgggcaggacggaccgagctacagcagcggccgcgcgaggaaataatagatac
ccagaggagtataagcccaatcaactgtgctggagctctaagcagtggctacagcataat
ccccagcacctgcaaaaggcctggataaaggggaggagtgacttctacactgtcctcact
gacagtggggctgtctcctacactggtatatcactgacctcacagaagagctttaccagc
tggggtgtgtgtgaactgaaggcggaggttagaaacaagtgctctctggttggaggtgag
cttgctgggaatggtccccggttcatctctggcatcgccgtcctcccacctggtcaagct
agaaagctgaaagttctcctggatacgcccctcttcccgtcccacacccctataaccagt
cctcagcaagccctttgtacctacctcctctccaactgcgctgctgtgttcgccagcctc
tga

>gi568815597f:40638844_40870825|GENSCAN_predicted_peptide_3|445_aa
MTEEDMIKMQVTKVSEEVVEMSTEGGFGGTSSSDAQQSLQSFWPRVMEEIRNLTVKDFRV
QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND
IAMAITKFDQFDFLIDIVPRDELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAVQVQGQ
QQGQQTTSSTTTIQPGQIIIAQPQQGQTTPVTMQVGEGQQVQIVQAQPQGQAQQAQSGTG
QTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQITQT
EVQQGQQQFSQFTDGQQLYQIQQVTMPAGQDLAQPMFIQSANQPSDGQAPQTELCPAWLR
VKKGASLMEKAGSVKAWGKSFQSCLAQAIIQLPAVAMPINKGMASAIENNPGPLSAKSST
AKTYFLLIEAGRIERAFHFIGHRGQ

>gi568815597f:40638844_40870825|GENSCAN_predicted_CDS_3|1338_bp
atgacagaggaagatatgatcaaaatgcaagtcacaaaagtgagtgaagaagttgtcgag
atgtccacagaaggaggatttggtggtactagcagcagtgatgcccagcaaagcctacag
tcgttctggcctcgggtcatggaagaaatccggaatttaacagtgaaagacttccgagtg
caggaactcccactggctcgtattaagaagattatgaaactggatgaagatgtgaagatg
atcagtgcagaagcgcctgtactctttgccaaggcagcccagatttttatcacagagttg
actcttcgagcctggattcacacagaagataacaagcgccggactctacagagaaatgat
atcgccatggcaattacaaaatttgatcagtttgattttctcatcgatattgttccaaga
gatgaactgaaacctccaaagcgtcaggaggaggtgcgccagtctgtaactcctgccgag
ccagtccagtactatttcacgctggctcagcaacccaccgctgtccaagtccagggccag
cagcaaggccagcagaccaccagctccacgaccaccatccagcctgggcagatcatcatc
gcacagcctcagcagggccagaccacacctgtgacaatgcaggttggagaaggtcagcag
gtgcagattgtccaggctcagccacagggtcaagcccaacaggcccagagtggcactgga
cagaccatgcaggtgatgcagcagatcatcactaacacaggagagatccagcagatcccg
gtgcagctgaatgccggccagctgcagtatatccgcttagcccagcctgtatcaggcact
caagttgtgcagggacagatccagacacttgccaccaatgctcaacagattacacagaca
gaggtccagcaaggacagcagcagttcagccagttcacagatggacagcagctctaccag
atccagcaagtcaccatgcctgcgggccaggacctcgcccagcccatgttcatccagtca
gccaaccagccctccgacgggcaggccccccagactgagctgtgtcctgcctggttgagg
gtcaagaagggggcatctctcatggagaaagctggctccgtcaaagcctggggtaaatcc
ttccagtcctgcctggcacaggctatcattcagctacctgctgtggccatgcccattaac
aaaggcatggcatctgccatagagaacaacccaggccccttgtcagccaagagttctaca
gccaagacctacttcctgttaattgaagcagggagaatagagagagcattccacttcatt
ggccacagaggccagtga

>gi568815597f:40638844_40870825|GENSCAN_predicted_peptide_4|931_aa
MAEAPPRRLGLGPPPGDAPRAELVALTAVQSEQGEAGGGGSPRRLGLLGSPLPPGAPLPG
PGSGSGSACGQRSSAAHKRYRRLQNWVYNVLERPRGWAFVYHVFISLAIPPSLRRGPLFL
LHRWGSIGSSSNFATSSLDCLSCSCDLSHHLYPDVPQICISSRPVTSHLALLHPSTYRKA
TSFSPHALGPLPIHWEVGNPGSNLSSVLGTLGDKGFLLVFSCLVLSVLSTIQEHQELANE
CLLILEFVMIVVFGLEYIVRVWSAGCCCRYRGWQGRFRFARKPFCVIDFIVFVASVAVIA
AGTQGNIFATSALRSMRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLI
FASFLVYLAEKDANSDFSSYADSLWWGTITLTTIGYGDKTPHTWLGRVLAAGFALLGISF
FALPAGILGSGFALKVQEQHRQKHFEKRRMPAANLIQRKLGKPMDAEGLAAWRLYSTDMS
RAYLTATWYYYDSILPSFRELALLFEHVQRARNGGLRPLEVRRAPVPDGAPSRYPPVATC
HRPGSTSFCPGESSRMGIKDRIRMGSSQRRTGPSKQHLAPPTMPTSPSSEQVGEATSPTK
VQKSWSFNDRTRFRASLRLKPRTSAEDAPSEEVAEEKSYQCELTVDDIMPAVKTVIRSIR
ILKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQTRVDQIVGRGPGDRKARE
KGDKGPSDAEVVDEISMMGRVVKVEKQVQSIEHKLDLLLGFYSRCLRSGTSASLGAVQVP
LFDPDITSDYHSPVDHEDISVSAQTLSISRSEREMPGRTEGSSSGRPAASGPPSALPTPS
RPYVAHLAGAQPREWERALGPWALTQLPAMQESHPSTHSETAVERARRMGLPYDQGDMGR
SPPSFHDRGSAINSVLGYAMSIVAIFMSMCN

>gi568815597f:40638844_40870825|GENSCAN_predicted_CDS_4|2796_bp
atggccgaggcccccccgcgccgcctcggcctgggtcccccgcccggggacgccccccgc
gcggagctagtggcgctcacggccgtgcagagcgaacagggcgaggcgggcgggggcggc
tccccgcgccgcctcggcctcctgggcagccccctgccgccgggcgcgcccctccctggg
ccgggctccggctcgggctccgcctgcggccagcgctcctcggccgcgcacaagcgctac
cgccgcctgcagaactgggtctacaacgtgctggagcggccccgcggctgggccttcgtc
taccacgtcttcatctctctggctatccctcccagtctgcgtagagggcctctgttcctg
ctgcaccgctggggctccatcgggtcctcctctaactttgctacaagctctctggactgt
ctcagctgctcctgtgacctcagtcaccacctctaccctgatgtcccccagatctgcatt
tccagccggcctgtgacctctcacctcgctctccttcacccatccacataccgcaaggcc
accagtttctctcctcatgcccttggtcctcttcccatccactgggaggttgggaaccct
ggctctaatctcagctctgtcctgggcacactgggcgacaaaggatttttgctggtcttc
agctgcctggtgctgtctgtgctgtccactatccaggagcaccaggaacttgccaacgag
tgtctcctcatcttggaattcgtgatgatcgtggttttcggcttggagtacatcgtccgg
gtctggtccgccggatgctgctgccgctaccgaggatggcagggtcgcttccgctttgcc
agaaagcccttctgtgtcatcgacttcatcgtgttcgtggcctcggtggccgtcatcgcc
gcgggtacccagggcaacatcttcgccacgtccgcgctgcgcagcatgcgcttcctgcag
atcctgcgcatggtgcgcatggaccgccgcggcggcacctggaagctgctgggctcagtg
gtctacgcgcatagcaaggagctgatcaccgcctggtacatcgggttcctggtgctcatc
ttcgcctccttcctggtctacctggctgagaaggacgccaactccgacttctcctcctac
gccgactcgctctggtgggggacgattacattgacaaccatcggctatggtgacaagaca
ccgcacacatggctgggcagggtcctggctgctggcttcgccttactgggcatctctttc
tttgccctgcctgccggcatcctaggctccggctttgccctgaaggtccaggagcagcac
cggcagaagcacttcgagaagcggaggatgccggcagccaacctcatccagaggaagctc
ggcaagcccatggatgctgaggggttggctgcctggcgcctgtactccaccgatatgagc
cgggcctacctgacagccacctggtactactatgacagtatcctcccatccttcagagag
ctggccctcttgtttgagcacgtgcaacgggcccgcaatgggggcctacggcccctggag
gtgcggcgggcgccggtacccgacggagcaccctcccgttacccgcccgttgccacctgc
caccggccgggcagcacctccttctgccctggggaaagcagccggatgggcatcaaagac
cgcatccgcatgggcagctcccagcggcggacgggtccttccaagcagcatctggcacct
ccaacaatgcccacctccccaagcagcgagcaggtgggtgaggccaccagccccaccaag
gtgcaaaagagctggagcttcaatgaccgcacccgcttccgggcatctctgagactcaaa
ccccgcacctctgctgaggatgccccctcagaggaagtagcagaggagaagagctaccag
tgtgagctcacggtggacgacatcatgcctgctgtgaagacagtcatccgctccatcagg
attctcaagttcctggtggccaaaaggaaattcaaggagacactgcgaccgtacgacgtg
aaggacgtcattgagcagtactcagcaggccacctggacatgctgggccggatcaagagc
ctgcaaactcgggtggaccaaattgtgggtcgggggcccggggacaggaaggcccgggag
aagggcgacaaggggccctccgacgcggaggtggtggatgaaatcagcatgatgggacgc
gtggtcaaggtggagaagcaggtgcagtccatcgagcacaagctggacctgctgttgggc
ttctattcgcgctgcctgcgctctggcacctcggccagcctgggcgccgtgcaagtgccg
ctgttcgaccccgacatcacctccgactaccacagccctgtggaccacgaggacatctcc
gtctccgcacagacgctcagcatctcccgctcggagcgtgagatgccaggtcgcacagag
ggcagcagcagcggccgtcccgcggcctctgggccccccagtgccctgcccactccatca
aggccctatgtggcccacctggcaggggcacagccccgggagtgggagcgggcgctgggg
ccctgggccctgacccagcttccagctatgcaagagagccacccctccacccactcagag
acagctgtggagagggccaggagaatgggattaccctatgaccaaggagacatgggaaga
agccctccttccttccacgatcgaggttccgccatcaactcggttctcggatatgcaatg
tcaattgttgccatctttatgtccatgtgtaactaa

>gi568815597f:40638844_40870825|GENSCAN_predicted_peptide_5|318_aa
VFAQILPFSYADIVGAGVHAGSRPAAMADHLMLAEGYRLVQRPPSAAAAHGPHALRTLPP
YAGPGLDSGLRPRGAPLGPPPPRQPGALAYGAFGPPSSFQPFPAVPPPAAGIAHLQPVAT
PYPGRAAAPPNAPGGPPGPQPAPSAAAPPPPAHALGGMDAELIDEEALTSLELELGLHRV
RELPELFLGQSEFDCFSDLGSAPPAGSSLDVSHPEKWCDCGQGSCPQLSSSLEELPGAAI
TIIIVIVIIIVIVIIIIIIVIVIIIVITPDVLNLTKAPSVLRFKGVGHRELATDVFLVLQ
ELKSHQGKEQDCGVQERI

>gi568815597f:40638844_40870825|GENSCAN_predicted_CDS_5|957_bp
gtttttgctcaaatattacctttctcttatgctgatattgttggggctggagtgcatgca
ggcagccggcctgccgccatggccgaccacctgatgctcgccgagggctaccgcctggtg
cagaggccgccgtccgccgcggccgcccatggccctcatgcgctccggactctgccgccg
tacgcgggcccgggcctggacagtgggctgaggccgcggggggctccgctggggccgccg
ccgccccgccaacccggggccctggcgtacggggccttcgggccgccgtcctccttccag
ccctttccggccgtgcctccgccggccgcgggcatcgcgcacctgcagcctgtggcgacg
ccgtaccccggccgcgcggccgcgccccccaacgctccgggaggccccccgggcccgcag
ccggcgccaagcgccgcagccccgccgccgcccgcgcacgccctgggcggcatggacgcc
gaactcatcgacgaggaggcgctgacgtcgctggagctggagctcgggctgcaccgcgtg
cgcgagctgcccgagctcttcctgggccagagcgagttcgactgcttctcggacttgggg
tccgcgccgcccgccggctcctcactggatgtgagccacccagagaagtggtgtgactgt
gggcaaggcagctgtccccagctaagctcatccctggaggagctgccaggcgctgccatc
actatcataattgtcattgtcatcatcatcgtcattgtcatcatcattatcatcatcgtc
attgtcatcatcatcgtcatcactccagatgtgctgaacctaactaaagcaccttcagtg
ttgaggtttaaaggtgtgggccaccgtgaactggccacagatgtgtttcttgtcctccag
gagctgaagtcacaccaggggaaggagcaagattgtggggtccaggagaggatttag