FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB0011, 480 aa 1>>>pF1KB0011 480 - 480 aa - 480 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.2474+/-0.000398; mu= -6.1274+/- 0.025 mean_var=492.4863+/-105.095, 0's: 0 Z-trim(124.7): 25 B-trim: 4897 in 2/60 Lambda= 0.057793 statistics sampled from 46943 (46984) to 46943 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.551), width: 16 Scan time: 11.770 The best scores are: opt bits E(85289) NP_077297 (OMIM: 613232) RNA-binding protein 42 is ( 480) 3272 287.0 7.7e-77 XP_005259314 (OMIM: 613232) PREDICTED: RNA-binding ( 473) 3210 281.9 2.7e-75 NP_001306042 (OMIM: 613232) RNA-binding protein 42 ( 451) 2121 191.0 5.7e-48 >>NP_077297 (OMIM: 613232) RNA-binding protein 42 isofor (480 aa) initn: 3272 init1: 3272 opt: 3272 Z-score: 1500.5 bits: 287.0 E(85289): 7.7e-77 Smith-Waterman score: 3272; 100.0% identity (100.0% similar) in 480 aa overlap (1-480:1-480) 10 20 30 40 50 60 pF1KB0 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB0 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB0 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB0 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB0 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB0 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 430 440 450 460 470 480 >>XP_005259314 (OMIM: 613232) PREDICTED: RNA-binding pro (473 aa) initn: 2104 init1: 2104 opt: 3210 Z-score: 1472.7 bits: 281.9 E(85289): 2.7e-75 Smith-Waterman score: 3210; 98.5% identity (98.5% similar) in 480 aa overlap (1-480:1-473) 10 20 30 40 50 60 pF1KB0 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP ::::::::::::::::::::::::::::::::::::::::::::::::: :::: XP_005 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRA-------AAGP 130 140 150 160 170 190 200 210 220 230 240 pF1KB0 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB0 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB0 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI 300 310 320 330 340 350 370 380 390 400 410 420 pF1KB0 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 360 370 380 390 400 410 430 440 450 460 470 480 pF1KB0 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 420 430 440 450 460 470 >>NP_001306042 (OMIM: 613232) RNA-binding protein 42 iso (451 aa) initn: 2103 init1: 2103 opt: 2121 Z-score: 982.2 bits: 191.0 E(85289): 5.7e-48 Smith-Waterman score: 3018; 94.0% identity (94.0% similar) in 480 aa overlap (1-480:1-451) 10 20 30 40 50 60 pF1KB0 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB0 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB0 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP :::::::::::::::::::::::::::: ::: NP_001 GPVGFGPGDRSHLDSPEAREAMFLRRAA-----------------------------AGP 130 140 150 190 200 210 220 230 240 pF1KB0 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG 160 170 180 190 200 210 250 260 270 280 290 300 pF1KB0 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL 220 230 240 250 260 270 310 320 330 340 350 360 pF1KB0 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI 280 290 300 310 320 330 370 380 390 400 410 420 pF1KB0 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 340 350 360 370 380 390 430 440 450 460 470 480 pF1KB0 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 400 410 420 430 440 450 480 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 20:17:20 2016 done: Thu Nov 3 20:17:22 2016 Total Scan time: 11.770 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]