FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KA1375, 868 aa 1>>>pF1KA1375 868 - 868 aa - 868 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 15.1491+/-0.00139; mu= -19.7293+/- 0.085 mean_var=730.5414+/-150.103, 0's: 0 Z-trim(114.5): 28 B-trim: 0 in 0/53 Lambda= 0.047452 statistics sampled from 15079 (15097) to 15079 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.464), width: 16 Scan time: 4.280 The best scores are: opt bits E(32554) CCDS2660.1 PDCD6IP gene_id:10015|Hs108|chr3 ( 868) 5718 407.2 6.3e-113 CCDS54561.1 PDCD6IP gene_id:10015|Hs108|chr3 ( 873) 5698 405.9 1.6e-112 CCDS2754.1 PTPN23 gene_id:25930|Hs108|chr3 (1636) 866 75.3 9.7e-13 >>CCDS2660.1 PDCD6IP gene_id:10015|Hs108|chr3 (868 aa) initn: 5718 init1: 5718 opt: 5718 Z-score: 2140.9 bits: 407.2 E(32554): 6.3e-113 Smith-Waterman score: 5718; 100.0% identity (100.0% similar) in 868 aa overlap (1-868:1-868) 10 20 30 40 50 60 pF1KA1 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KA1 HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KA1 SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDIS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KA1 PDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 PDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KA1 VFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 VFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYVNVKDF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KA1 SDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KA1 VSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 VSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KA1 SRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KA1 SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KA1 KTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 KTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALS 550 560 570 580 590 600 610 620 630 640 650 660 pF1KA1 VTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 VTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAY 610 620 630 640 650 660 670 680 690 700 710 720 pF1KA1 DNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 DNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAP 670 680 690 700 710 720 730 740 750 760 770 780 pF1KA1 SIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAG 730 740 750 760 770 780 790 800 810 820 830 840 pF1KA1 TAAPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 TAAPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQS 790 800 810 820 830 840 850 860 pF1KA1 PGQAPYPGPQQPSYPFPQPPQQSYYPQQ :::::::::::::::::::::::::::: CCDS26 PGQAPYPGPQQPSYPFPQPPQQSYYPQQ 850 860 >>CCDS54561.1 PDCD6IP gene_id:10015|Hs108|chr3 (873 aa) initn: 4172 init1: 4172 opt: 5698 Z-score: 2133.5 bits: 405.9 E(32554): 1.6e-112 Smith-Waterman score: 5698; 99.4% identity (99.4% similar) in 873 aa overlap (1-868:1-873) 10 20 30 40 50 60 pF1KA1 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KA1 HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KA1 SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDIS 130 140 150 160 170 180 190 200 210 220 230 pF1KA1 PDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPK- ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKY 190 200 210 220 230 240 240 250 260 270 280 290 pF1KA1 ----EVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 FYFQEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYV 250 260 270 280 290 300 300 310 320 330 340 350 pF1KA1 NVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 NVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLF 310 320 330 340 350 360 360 370 380 390 400 410 pF1KA1 EKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQ 370 380 390 400 410 420 420 430 440 450 460 470 pF1KA1 SILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKER 430 440 450 460 470 480 480 490 500 510 520 530 pF1KA1 WQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 WQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP 490 500 510 520 530 540 540 550 560 570 580 590 pF1KA1 SANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVIN 550 560 570 580 590 600 600 610 620 630 640 650 pF1KA1 EEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKN 610 620 630 640 650 660 660 670 680 690 700 710 pF1KA1 LATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAR 670 680 690 700 710 720 720 730 740 750 760 770 pF1KA1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPS 730 740 750 760 770 780 780 790 800 810 820 830 pF1KA1 PVGAGTAAPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PVGAGTAAPAPSQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPP 790 800 810 820 830 840 840 850 860 pF1KA1 VYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ ::::::::::::::::::::::::::::::::: CCDS54 VYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ 850 860 870 >>CCDS2754.1 PTPN23 gene_id:25930|Hs108|chr3 (1636 aa) initn: 330 init1: 143 opt: 866 Z-score: 342.2 bits: 75.3 E(32554): 9.7e-13 Smith-Waterman score: 980; 27.5% identity (58.0% similar) in 902 aa overlap (5-867:10-872) 10 20 30 40 50 pF1KA1 MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVG : ..::.... . . ::. ..: ::. : . ..: ::. :: CCDS27 MEAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNY---GENPEAYNEELKKLELLRQNAVR 10 20 30 40 50 60 70 80 90 100 110 pF1KA1 RPLDKHEGALETLLRYYDQICSIEPKFPFSENQ-ICLTFTWKDAFDKGSLFGGSVKLALA : : :: .: .: :. .. . :.. .: . :: . :. : :: : CCDS27 VPRD-FEGC-SVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFS-----GKSV--AHE 60 70 80 90 100 120 130 140 150 160 170 pF1KA1 SLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSRE .. ::..:.:.: .:: :...: .. ..::.:.. :.: :.::: ...: .: : CCDS27 DIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYS-- 110 120 130 140 150 160 180 190 200 210 220 230 pF1KA1 PTVDISPDTVGTLSL-IMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQY ::.: . ::.. .::.:::: .. :. :. :. ..:... :..::. .: . . CCDS27 --VDMS-RQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALEN 170 180 190 200 210 220 240 250 260 270 280 pF1KA1 KDT------LPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHA----AEL :: . :. .. : . : :. :.. :..:.::::..: .: : : CCDS27 PDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEA 230 240 250 260 270 280 290 300 310 320 330 340 pF1KA1 IKTVASRYDEYVNVKDFS-DKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTP :: . .. : .. :. : :. .::::::::::. :: : :.:. : ::: : CCDS27 IKLAKGQPDTVQDALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLP 290 300 310 320 330 340 350 360 370 380 390 400 pF1KA1 VNVPISQKFT--DLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLN :: : . : :.: :.::...... . :...:: :. . .:.... . . . . :.. CCDS27 VN-PTDPAVTGPDIFAKLVPMAAHEASSLYSEEKAKLLREMMAKIEDKNEVLDQFMDSMQ 350 360 370 380 390 400 410 420 430 440 450 pF1KA1 L-PAAIEDVSGDT-VPQSILTKSRSV-IEQGGIQTVDQLIKELPELLQRNREILDESLRL : : ....... . .: ... : .. .. .... : .. : .. . : . : CCDS27 LDPETVDNLDAYSHIPPQLMEKCAALSVRPDTVRNLVQSMQVLSGVFTDVEASLKDIRDL 410 420 430 440 450 460 460 470 480 490 500 510 pF1KA1 LDEEEATDNDLRAKFKERWQR------TPSNELYKPLRAEGTNFRTVLDKAVQADGQVKE :.:.: :. ::.: . : . :: . .: : ... : .:: ....... CCDS27 LEEDEL----LEQKFQEAVGQAGAISITSKAELAE-VRREWAKYMEVHEKASFTNSELHR 470 480 490 500 510 520 530 540 550 560 570 pF1KA1 CYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLEN .. : .. :: : .. ::.:. :: . . . :.. :: .:....:.. .: .::. CCDS27 AMNLHVGNLRLLSGPLDQVRAALPT--PALSPEDKAVLQNLKRILAKVQEMRDQRVSLEQ 520 530 540 550 560 570 580 590 600 610 620 pF1KA1 DLKSV--NFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNI .:. . . :.:....:. : .: : . : : . ....: :. .: . CCDS27 QLRELIQKDDITASLVTT---DH--SEMKKLFEEQLKKYDQLKVYLEQNLAAQDRVLCAL 580 590 600 610 620 630 630 640 650 660 670 680 pF1KA1 QVSHQEFSKMKQSNNEANLR-EEVLKNLATAYDNFVELVANLKEGTKFYNEL----TEIL .. ... ... .. . . . .:..:...:. . .:. . .:: :: .: . .: CCDS27 TEANVQYAAVRRVLSDLDQKWNSTLQTLVASYEAYEDLMKKSQEGRDFYADLESKVAALL 640 650 660 670 680 690 690 700 710 720 730 740 pF1KA1 VRFQNKCSDIVFARKTERDELL-KDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPA : :. :. ::.. :..:: ..:... .:.::. : . : : .: :: CCDS27 ERTQSTCQ----AREAARQQLLDRELKKKPPPRPTAPKPLLPRREESEAV-EAGDPPEEL 700 710 720 730 740 750 760 770 780 790 800 pF1KA1 PRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSAPPPQAQGPPY :..:: : : : : .. .: ::: ..:. :.: : :: .:: CCDS27 -RSLPPDMVAGP-RLPDTFL-GSATPLHFPPSPFPSSTG-PGPHYLSGPLPPGTYSGPTQ 750 760 770 780 790 800 810 820 830 840 850 pF1KA1 PTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQ----APYPG--PQQPSYPFP : :: ::. : : :. : ..:: . .:: : : : .: CCDS27 LIQPRAPGPHAMPVAPGPALYPAPAYTPELGLVPRSSPQHGVVSSPYVGVGPAPPVAGLP 810 820 830 840 850 860 860 pF1KA1 Q-PPQQSYYPQQ . :: : :. CCDS27 SAPPPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPLPTP 870 880 890 900 910 920 868 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 20:00:02 2016 done: Thu Nov 3 20:00:02 2016 Total Scan time: 4.280 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]