FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KA0671, 536 aa 1>>>pF1KA0671 536 - 536 aa - 536 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0492+/-0.000892; mu= 15.2275+/- 0.054 mean_var=93.8142+/-18.351, 0's: 0 Z-trim(108.0): 39 B-trim: 0 in 0/52 Lambda= 0.132416 statistics sampled from 9897 (9923) to 9897 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.305), width: 16 Scan time: 2.740 The best scores are: opt bits E(32554) CCDS1830.1 SOCS5 gene_id:9655|Hs108|chr2 ( 536) 3679 713.3 1.7e-205 CCDS9722.1 SOCS4 gene_id:122809|Hs108|chr14 ( 440) 1160 232.1 1.1e-60 >>CCDS1830.1 SOCS5 gene_id:9655|Hs108|chr2 (536 aa) initn: 3679 init1: 3679 opt: 3679 Z-score: 3802.6 bits: 713.3 E(32554): 1.7e-205 Smith-Waterman score: 3679; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536) 10 20 30 40 50 60 pF1KA0 MDKVGKMWNNFKYRCQNLFGHEGGSRSENVDMNSNRCLSVKEKNISIGDSTPQQQSSPLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 MDKVGKMWNNFKYRCQNLFGHEGGSRSENVDMNSNRCLSVKEKNISIGDSTPQQQSSPLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KA0 ENIALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCVTPGTRLARRDSYSRHAPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 ENIALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCVTPGTRLARRDSYSRHAPW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KA0 GGKKKHSCSTKTQSSLDADKKFGRTRSGLQRRERRYGVSSVHDMDSVSSRTVGSRSLRQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 GGKKKHSCSTKTQSSLDADKKFGRTRSGLQRRERRYGVSSVHDMDSVSSRTVGSRSLRQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KA0 LQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTAPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 LQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTAPV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KA0 SPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGVDPPPNAQIHTFEATAQVNPLYKLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 SPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGVDPPPNAQIHTFEATAQVNPLYKLG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KA0 PKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQSRRQKQRQISGDSHTHVSRQGAWKVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 PKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQSRRQKQRQISGDSHTHVSRQGAWKVH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KA0 TQIDYIHCLVPDLLQITGNPCYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVSFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 TQIDYIHCLVPDLLQITGNPCYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVSFR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KA0 RYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHYKDPSSCMFFEPLLTISLNRTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 RYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHYKDPSSCMFFEPLLTISLNRTF 430 440 450 460 470 480 490 500 510 520 530 pF1KA0 PFSLQYICRAVICRCTTYDGIDGLPLPSMLQDFLKEYHYKQKVRVRWLEREPVKAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS18 PFSLQYICRAVICRCTTYDGIDGLPLPSMLQDFLKEYHYKQKVRVRWLEREPVKAK 490 500 510 520 530 >>CCDS9722.1 SOCS4 gene_id:122809|Hs108|chr14 (440 aa) initn: 1399 init1: 1035 opt: 1160 Z-score: 1203.2 bits: 232.1 E(32554): 1.1e-60 Smith-Waterman score: 1496; 54.2% identity (77.3% similar) in 437 aa overlap (93-525:7-430) 70 80 90 100 110 120 pF1KA0 IALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCVTPGTRLARRDSYSRHAPWGG .: :. : : : : .: . . :.: CCDS97 MAENNENISKNVD--VRPKTSRSRSADRKDGYVWSG 10 20 30 130 140 150 160 170 pF1KA0 KKKHSCSTKTQSSLDADKKFG--RTRSGLQRRERRYGVSSVH-DMD-SVSSRTVGSRSLR :: : : :..: ::. : .:. .:. .::... ::.. :.: : . : .: :::. CCDS97 KKL-SWSKKSESYSDAETVNGIEKTEVSLRNQERKHSCSSIELDLDHSCGHRFLG-RSLK 40 50 60 70 80 90 180 190 200 210 220 230 pF1KA0 QRLQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTA :.:::.:: :::... :.. . . .:::::.:::::.::::: :::: .::.::.::: CCDS97 QKLQDAVGQCFPIKNCSSRHSSGLPSKRKIHISELMLDKCPFPPRSDLAFRWHFIKRHTA 100 110 120 130 140 150 240 250 260 270 280 290 pF1KA0 PVSPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGVDPPPNAQIHTFEATAQVNPLYK :.. .: . . : : .:: .. .:..: ..::... ..... :.. : : . CCDS97 PINSKSDEWVSTD--LSQTELRDGQLKRR---NMEENINCFSHTNVQPCVITTD-NALCR 160 170 180 190 200 300 310 320 330 340 350 pF1KA0 LGPKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQSRRQKQRQISGDSHTHVSRQGAWK :: . :. .:..: : ... ::... ::: .::.... . . :.. .. . : CCDS97 EGPMTGSVMNLVSNNS--IEDSDMDSDDEILTLCTSSRKRNKPKWDLDDEI-LQLETPPK 210 220 230 240 250 260 360 370 380 390 400 410 pF1KA0 VHTQIDYIHCLVPDLLQITGNPCYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVS ::::::.::::::::::..:::::::::.: :::::::::::::::::::::::::::: CCDS97 YHTQIDYVHCLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVS 270 280 290 300 310 320 420 430 440 450 460 470 pF1KA0 FRRYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHYKDPSSCMFFEPLLTISLNR ::::.:::::::::::::::::::::::::: .:::::::::::.::::::::. : : CCDS97 FRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIR 330 340 350 360 370 380 480 490 500 510 520 530 pF1KA0 TFPFSLQYICRAVICRCTTYDGIDGLPLPSMLQDFLKEYHYKQKVRVRWLEREPVKAK :::::::.:::.::: ::::::::.::.:: .. .:::::::.:::: CCDS97 TFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEYHYKSKVRVLRIDAPEQQC 390 400 410 420 430 440 536 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 19:46:01 2016 done: Thu Nov 3 19:46:01 2016 Total Scan time: 2.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]