FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0671, 536 aa
  1>>>pF1KA0671 536 - 536 aa - 536 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0492+/-0.000892; mu= 15.2275+/- 0.054
 mean_var=93.8142+/-18.351, 0's: 0 Z-trim(108.0): 39  B-trim: 0 in 0/52
 Lambda= 0.132416
 statistics sampled from 9897 (9923) to 9897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS1830.1 SOCS5 gene_id:9655|Hs108|chr2           ( 536) 3679 713.3 1.7e-205
CCDS9722.1 SOCS4 gene_id:122809|Hs108|chr14        ( 440) 1160 232.1 1.1e-60


>>CCDS1830.1 SOCS5 gene_id:9655|Hs108|chr2                (536 aa)
 initn: 3679 init1: 3679 opt: 3679  Z-score: 3802.6  bits: 713.3 E(32554): 1.7e-205
Smith-Waterman score: 3679; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536)

               10        20        30        40        50        60
pF1KA0 MDKVGKMWNNFKYRCQNLFGHEGGSRSENVDMNSNRCLSVKEKNISIGDSTPQQQSSPLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MDKVGKMWNNFKYRCQNLFGHEGGSRSENVDMNSNRCLSVKEKNISIGDSTPQQQSSPLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 ENIALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCVTPGTRLARRDSYSRHAPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ENIALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCVTPGTRLARRDSYSRHAPW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 GGKKKHSCSTKTQSSLDADKKFGRTRSGLQRRERRYGVSSVHDMDSVSSRTVGSRSLRQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GGKKKHSCSTKTQSSLDADKKFGRTRSGLQRRERRYGVSSVHDMDSVSSRTVGSRSLRQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTAPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 SPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGVDPPPNAQIHTFEATAQVNPLYKLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGVDPPPNAQIHTFEATAQVNPLYKLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 PKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQSRRQKQRQISGDSHTHVSRQGAWKVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQSRRQKQRQISGDSHTHVSRQGAWKVH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 TQIDYIHCLVPDLLQITGNPCYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVSFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 TQIDYIHCLVPDLLQITGNPCYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVSFR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 RYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHYKDPSSCMFFEPLLTISLNRTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 RYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHYKDPSSCMFFEPLLTISLNRTF
              430       440       450       460       470       480

              490       500       510       520       530      
pF1KA0 PFSLQYICRAVICRCTTYDGIDGLPLPSMLQDFLKEYHYKQKVRVRWLEREPVKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PFSLQYICRAVICRCTTYDGIDGLPLPSMLQDFLKEYHYKQKVRVRWLEREPVKAK
              490       500       510       520       530      

>>CCDS9722.1 SOCS4 gene_id:122809|Hs108|chr14             (440 aa)
 initn: 1399 init1: 1035 opt: 1160  Z-score: 1203.2  bits: 232.1 E(32554): 1.1e-60
Smith-Waterman score: 1496; 54.2% identity (77.3% similar) in 437 aa overlap (93-525:7-430)

             70        80        90       100       110       120  
pF1KA0 IALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCVTPGTRLARRDSYSRHAPWGG
                                     .: :. :  : : :  .:  . .    :.:
CCDS97                         MAENNENISKNVD--VRPKTSRSRSADRKDGYVWSG
                                       10          20        30    

            130       140         150       160         170        
pF1KA0 KKKHSCSTKTQSSLDADKKFG--RTRSGLQRRERRYGVSSVH-DMD-SVSSRTVGSRSLR
       ::  : : :..:  ::.   :  .:. .:. .::... ::.. :.: : . : .: :::.
CCDS97 KKL-SWSKKSESYSDAETVNGIEKTEVSLRNQERKHSCSSIELDLDHSCGHRFLG-RSLK
            40        50        60        70        80         90  

      180       190       200       210       220       230        
pF1KA0 QRLQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKCPFPAGSDLAQKWHLIKQHTA
       :.:::.:: :::... :.. .  . .:::::.:::::.:::::  :::: .::.::.:::
CCDS97 QKLQDAVGQCFPIKNCSSRHSSGLPSKRKIHISELMLDKCPFPPRSDLAFRWHFIKRHTA
            100       110       120       130       140       150  

      240       250       260       270       280       290        
pF1KA0 PVSPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGVDPPPNAQIHTFEATAQVNPLYK
       :.. .:  . . :  : .:: .. .:..:   ..::...   .....    :.. : : .
CCDS97 PINSKSDEWVSTD--LSQTELRDGQLKRR---NMEENINCFSHTNVQPCVITTD-NALCR
            160         170          180       190       200       

      300       310       320       330       340       350        
pF1KA0 LGPKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQSRRQKQRQISGDSHTHVSRQGAWK
        ::  .  :. .:..:  : ... ::...  ::: .::.... . . :..  .. .   :
CCDS97 EGPMTGSVMNLVSNNS--IEDSDMDSDDEILTLCTSSRKRNKPKWDLDDEI-LQLETPPK
        210       220         230       240       250        260   

      360       370       380       390       400       410        
pF1KA0 VHTQIDYIHCLVPDLLQITGNPCYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVS
        ::::::.::::::::::..:::::::::.: ::::::::::::::::::::::::::::
CCDS97 YHTQIDYVHCLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVS
           270       280       290       300       310       320   

      420       430       440       450       460       470        
pF1KA0 FRRYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHYKDPSSCMFFEPLLTISLNR
       ::::.::::::::::::::::::::::::::  .:::::::::::.::::::::.  : :
CCDS97 FRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIR
           330       340       350       360       370       380   

      480       490       500       510       520       530      
pF1KA0 TFPFSLQYICRAVICRCTTYDGIDGLPLPSMLQDFLKEYHYKQKVRVRWLEREPVKAK
       :::::::.:::.::: ::::::::.::.:: .. .:::::::.::::           
CCDS97 TFPFSLQHICRTVICNCTTYDGIDALPIPSSMKLYLKEYHYKSKVRVLRIDAPEQQC 
           390       400       410       420       430       440 




536 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:46:01 2016 done: Thu Nov  3 19:46:01 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]