GENSCAN 1.0	Date run:  3-Nov-116	Time: 19:43:21

Sequence gi568815597f:148648953_148849495 : 200543 bp : 40.09% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   7915   8054  140  0  2   86  115    88 0.659  10.96
 1.02 Term +  14444  14528   85  2  1   70   40    81 0.368  -2.35
 1.03 PlyA +  15220  15225    6                               1.05

 2.06 PlyA -  15832  15827    6                               1.05
 2.05 Term -  20557  20370  188  2  2   58   55    71 0.247  -2.53
 2.04 Intr -  25748  25636  113  1  2   81  101    63 0.561   6.00
 2.03 Intr -  30239  29994  246  1  0   80   65    93 0.080   1.85
 2.02 Intr -  30612  30510  103  1  1   46  101   211 0.005  16.51
 2.01 Init -  41125  40990  136  1  1   76   57   115 0.011   7.55
 2.00 Prom -  44407  44368   40                              -8.55

 3.00 Prom +  46829  46868   40                              -6.55
 3.01 Init +  49185  49381  197  2  2   67   64   128 0.591   6.75
 3.02 Intr +  56533  56639  107  1  2  107   63    40 0.290   2.34
 3.03 Intr +  63548  63670  123  0  0   50   92    61 0.190   2.34
 3.04 Intr +  66393  66520  128  1  2  102   61    66 0.439   4.78
 3.05 Intr +  72941  73078  138  1  0   58   98    30 0.271   0.74
 3.06 Intr +  73608  73769  162  2  0   83   74    92 0.206   6.55
 3.07 Intr +  82055  82206  152  1  2   81   79    35 0.225  -0.06
 3.08 Intr +  83442  83603  162  0  0  105  100    58 0.956   6.87
 3.09 Intr +  88177  88280  104  1  2  122   60    20 0.621   1.50
 3.10 Term +  99882 100546  665  1  2   41   44   573 0.832  41.24
 3.11 PlyA + 103122 103127    6                               1.05

 4.08 PlyA - 104138 104133    6                               1.05
 4.07 Term - 115226 114880  347  0  2    6   42   229 0.206   3.77
 4.06 Intr - 117216 117086  131  2  2   77   94    46 0.412   3.52
 4.05 Intr - 123842 123713  130  0  1  115   31    83 0.553   4.13
 4.04 Intr - 127204 127058  147  2  0   48   70   204 0.992  13.89
 4.03 Intr - 130049 129889  161  1  2   80  111   137 0.952  13.91
 4.02 Intr - 143092 142923  170  1  2   12   46   132 0.060  -0.78
 4.01 Init - 145925 145923    3  2  0  108   81     0 0.108   1.35
 4.00 Prom - 149268 149229   40                              -6.65

 5.00 Prom + 150343 150382   40                              -5.35
 5.01 Init + 158063 158104   42  1  0   82  109     0 0.627   1.97
 5.02 Intr + 159406 159785  380  0  2  -53   78   412 0.878  18.94
 5.03 Intr + 173453 173620  168  2  0   44   41   129 0.009   1.94
 5.04 Intr + 175844 175965  122  2  2   55   73   110 0.146   5.42
 5.05 Term + 177248 177270   23  0  2   81   43    53 0.245  -2.40
 5.06 PlyA + 177397 177402    6                               1.05

 6.02 PlyA - 178845 178840    6                               1.05
 6.01 Sngl - 185230 184217 1014  1  0   44   46   422 0.543  30.36
 6.00 Prom - 185488 185449   40                             -14.62

 7.06 PlyA - 185726 185721    6                               1.05
 7.05 Term - 186537 185737  801  0  0   68   42   629 0.180  48.55
 7.04 Intr - 187322 187165  158  0  2   51   33   102 0.043  -0.19
 7.03 Intr - 192429 192284  146  2  2   56  106    20 0.061  -0.39
 7.02 Intr - 192982 192870  113  1  2   83   37   143 0.062   6.96
 7.01 Init - 196014 195583  432  0  0   77    2   295 0.688  16.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  30582  30510   73  0  1   77  101   237 0.898  23.18
S.002 Term - 147960 147872   89  1  2   91   42   107 0.826   3.24
S.003 Term + 160355 160451   97  2  1  122   44    68 0.911   2.26


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:148648953_148849495|GENSCAN_predicted_peptide_1|74_aa
MLKIYSLAPDPNQQYTNIKEKVTETKITHLMKIYDLAKENEAENIHSSEIRHRPLRMPDQ
ISFPNAENQLLLTF

>gi568815597f:148648953_148849495|GENSCAN_predicted_CDS_1|225_bp
atgctgaaaatctacagcctggcccctgatccaaatcagcaatatactaatattaaggaa
aaagtaacagaaaccaaaatcacccacctaatgaagatatatgatctagcaaaagaaaat
gaggctgagaacatccacagctcagaaatccgacataggccacttcgcatgcctgatcag
ataagctttcccaatgctgaaaaccaactgcttctaaccttttaa

>gi568815597f:148648953_148849495|GENSCAN_predicted_peptide_2|261_aa
MVRAREGFAGEVIFELGDVFSEVGSEAFCWEENGEQKEGKRLQQRGGGGGGGDREDARPA
PRSAVGAAGALAVLRDPRAWREAGSKSQKLLFRSARVQGGGQFCPSGSAFLGVEREPTAG
LGGAERRRARFWRGERGQGRQAKRPAPSQPASPLPGGGTWAGTCLACAPNSESTERQVLV
TASVTPAFPPLEHSIGEADGTPLVLTFVAPAELLYAEALQVSSVWFRVISGHMNAFLSII
GIYWAGCLPAITIFSMKRPGE

>gi568815597f:148648953_148849495|GENSCAN_predicted_CDS_2|786_bp
atggtgagggctagggaaggttttgcaggggaggtgatatttgaactaggagatgtcttt
agtgaagtaggaagtgaagccttttgctgggaagaaaatggggaacagaaagaaggaaag
aggctacagcagagaggcggcggcggcggaggaggcgaccgagaagatgcccgccctgcg
ccccgctctgctgtgggcgctgctggcgctctggctgtgctgcgcgacccccgcgcatgg
agggaggccggcagcaagtctcagaaactcctttttcgtagtgccagggtgcagggaggt
gggcagttttgcccttcaggttccgcgtttcttggggtcgagcgagagccgacggcgggc
ctcggaggggctgagcgaaggcgtgccagattctggcgtggagagcgggggcagggccgc
caagccaaacggcctgcaccttcgcagccagcctcgcctttgccagggggcggcacatgg
gccggaacttgtctggcatgtgccccaaattcagagtcaactgagcggcaggtcttagtc
acagcatctgtgactcctgctttcccacctttagaacattctataggagaggctgatggc
accccgctggttttgacattcgttgctccagctgaactgctctatgctgaagccctgcag
gtctcaagtgtttggttcagagtaatttcaggccatatgaatgctttcttaagtatcatt
ggaatttactgggctggctgtctgccagctattaccatatttagcatgaagagacctggg
gaatga

>gi568815597f:148648953_148849495|GENSCAN_predicted_peptide_3|645_aa
MGRLDYSDEPDVITGVLIEKGGRSVRERDVTMRDHQPKPKTNKQKQKLWLEAGRGKEQCL
SSSSRRHCHAPGGVGGDASNPLGFDLAERGLSFQLLGLFLKKMRDGLPGHSYTGYVNTVP
ATPNFLFEMKVPHPQPPALRSRGIMKCGIKLLLGQGGPLHSVGSTSLNSVMLNEARFQLC
RAGMQPCLNLGGGAQEIIQAPLPRAAQGRRPGLQGPPQSLSPRNMILTPPKVASSCSALD
KRAGHCCWGDISRQARESCRLLSAYLLAGKTNIGQLFSKGGMQSTEDPLTYYLCQALYSS
QQCWKIGITILKLQMRKLRSGDLSVSEIPNPRGMDRLPEGSSETCVRKEKLSGLSSLLHD
HSFSPTYHCLAWNGSWKEDSRETIETDNRKDAVISELSLEHFSPVCQGFREGFPNIQAGC
QGFLTLPGAPAPDSPSPPLPGGVAAAGPPRRRPEQQQQQQEPASMMKFKPNQTRTYDREG
FKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGK
LGRLLGIFEQNQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPV
HAEYLEKLKLGCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR

>gi568815597f:148648953_148849495|GENSCAN_predicted_CDS_3|1938_bp
atgggaagattagattattcagacgaacctgatgtaatcacaggggtccttatagaaaaa
ggaggcaggagtgtcagagaaagagatgtgacaatgagggaccatcagccaaaaccaaaa
acaaacaaacaaaaacaaaaactgtggttagaagctggaagaggcaaagaacagtgtctc
tcctccagctccaggagacattgtcatgctccaggtggggtgggtggtgatgccagtaat
cccctgggctttgacttagctgagcgtggactcagttttcagttgcttggcttgttcttg
aagaaaatgagagatgggctcccagggcactcctatactggatatgtcaacacagtgcct
gccacacccaacttcctctttgagatgaaagtgccccacccacagccccctgctttgaga
agcagagggataatgaagtgtggcataaagcttctcctgggtcagggtggcccactccac
agtgttggcagcaccagtctcaacagtgtgatgctgaatgaagctaggttccagctgtgt
agagctggcatgcagccctgcctgaacctcggaggaggcgcccaggagatcatccaggca
ccgctgcctagggccgcgcagggaagacggccagggctccagggtccgcctcagtcactg
tcaccccgcaacatgattctgactcccccaaaggtggccagcagctgctccgcacttgac
aaacgtgctggacactgctgctggggagacatcagccggcaagcaagggaaagttgcaga
cttctcagtgcttacctcctagctgggaagacaaatattggacaactgttctctaaagga
ggcatgcagagtactgaagacccactgacctattatttgtgtcaggcactttattcctca
caacaatgctggaagattggtataactattctcaaattacagatgaggaaactgaggtct
ggggatctgtctgtgtcggagatccccaacccccggggcatggacaggcttcctgagggc
tcctcagaaacatgtgttagaaaagaaaagctttccggtctgtccagtctcctccatgac
cacagtttctcacccacataccattgtctggcttggaatggatcctggaaggaggactca
agagaaaccatagaaacagacaacaggaaagatgctgtcatttctgagttatctttggag
catttctctccagtgtgtcagggtttcagagaaggctttcctaatattcaggctggctgt
cagggtttcctaacgctcccgggcgctcctgcgcccgactcgccctcgcccccactcccc
ggcggggtggcggcggccgggcccccacggcggcggccggagcagcagcagcagcagcag
gagcccgcctctatgatgaagttcaagcccaaccagacgcggacctacgaccgcgagggc
ttcaagaagcgggcggcgtgcctgtgcttccggagcgagcaggaggacgaggtgctgctg
gtgagtagcagccggtacccagaccagtggattgtcccaggaggaggaatggaacccgag
gaggaacctggcggtgctgccgtgagggaagtttatgaggaggctggagtcaaaggaaaa
ctaggcagacttctgggcatatttgagcagaaccaagaccgaaagcacagaacatatgtt
tatgttctaacagtcactgaaatattagaagattgggaagattctgttaatattggaagg
aagagagagtggttcaaagtagaagatgctatcaaagttctccagtgtcataaacctgta
catgcagagtatctggaaaagctaaagctgggttgttccccagccaatggaaattctaca
gtcccttcccttccggataataatgccttgtttgtaaccgctgcacagacctctgggttg
ccatctagtgtaagatag

>gi568815597f:148648953_148849495|GENSCAN_predicted_peptide_4|362_aa
MRLSRDFQSAPCSFRLIPPSPLTLHFHFSDWMHCAEDTAKGCENSRIKKSPAFTQLALYI
IEQGVCDLVLCEAAFPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKK
LYIDSCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDA
KYLNMHSTYAKLAAVAVFFIMLIVNEATWLSPLYATFRPPRASKKTKAEKPIQETATSKV
EATSDHTERLLKSQKAIDAGVVAEKMEHLYSANGNVNSFSRCAKHFGDFSKNRQQLPLDP
AIPLLDIYLKEYRLFCHKDTCTHMFIAALFTIAKTWNQPKCPSVVVWIKKMWYTYTVEYT
QP

>gi568815597f:148648953_148849495|GENSCAN_predicted_CDS_4|1089_bp
atgaggctttcacgggacttccaaagcgcaccttgttctttccggctcattcccccttcc
cctctaacccttcactttcacttctctgactggatgcactgtgcggaggacacagctaag
ggctgtgaaaattcaagaataaagaaaagtcctgccttcacgcagctcgcactctacatt
attgagcagggggtgtgtgatttggttttatgtgaagctgccttccctaagacgttggct
tttgcctacctagaagatttgcactcagaatttgatgaacagcatggaaagaaggtgccc
actgtgtcccgaccctattcctttattgaatttgatactttcattcagaaaaccaagaag
ctctacattgacagttgtgctcgaagaaacctaggctccatcaacactgaattgcaagat
gtgcagaggatcatggtggccaatatcgaagaagtgttacaacgaggagaagcactctca
gcattggattcaaaggctaacaatttgtccagtctgtccaagaaataccgccaggatgcg
aagtacttgaacatgcattccacttatgccaaacttgcagcagtagctgtatttttcatc
atgttaatagtaaatgaggccacttggctgagcccattatatgcaacattcagaccccca
agggcatcaaagaagacaaaagcagaaaaacctatccaagaaacagcaacttcaaaggtt
gaagcaacatcagaccacacagaacggctattaaaaagtcaaaaagcaatagatgccggc
gtggttgcagagaaaatggaacacttatatagtgctaatgggaatgtaaattcgttcagc
cgttgtgcaaagcactttggtgatttctcaaagaaccggcaacaattaccactcgaccca
gcgatcccattattggatatatacctaaaggaatatagattgttctgccataaagacaca
tgcacgcatatgttcatcgcagcactattcacgatagcaaagacatggaatcaacctaaa
tgcccatcagtggtagtctggataaagaaaatgtggtacacgtacaccgtggaatataca
cagccataa

>gi568815597f:148648953_148849495|GENSCAN_predicted_peptide_5|244_aa
MKLKLGGLKERMGQVAEAAAEEAQGTDGDAQPGPEDAPWQSRKTPGKQAGTVARTGVARP
RKSMKGTDSGSCCRRRCDFGCCCRASRRAHYTPYRSGDATRTPQSPRQTPSRERRRPEPA
GSWAAAAEEEEAAAAATPWMRPAAAFNSHRNGNPIVNWAYEGSRLPASYEDLIPDDHSKS
IPHPVHGKVVFLENGSCHPFNHRWKTLLAVTGPGDFSVFLRALKAKVHIYGSSVLPEECT
EASK

>gi568815597f:148648953_148849495|GENSCAN_predicted_CDS_5|735_bp
atgaagcttaagttaggaggcttaaaagaaagaatgggccaggtggcagaggcagccgcg
gaggaggcccagggaactgacggggatgctcagccaggcccagaggatgcgccctggcag
tcccggaaaacaccaggaaaacaagcaggaaccgtagctaggactggggtggccaggccc
aggaaatccatgaagggcacagacagcgggtcctgctgccgccgccgatgcgactttggc
tgctgctgtcgcgcgtcccgccgggctcactacacgccttaccggtccggggacgcgacg
cgaacccctcagtccccacggcagaccccgagccgggaaagacggcgcccggagccagcc
gggagctgggcagcagcggccgaggaggaagaagcagctgcggcggccacaccctggatg
agaccagcagctgcattcaattctcataggaacgggaaccctattgtgaactgggcatat
gagggatctaggttgcctgcttcttacgaggatctaatacctgatgatcattccaaatcc
atcccccaccctgtccatggaaaagttgtcttccttgaaaatggttcctgtcatcccttc
aaccaccgctggaagacattgctggcagtgactggccctggggacttcagtgtcttcttg
cgtgccttaaaggctaaggttcacatctatggctccagtgtcctacccgaggaatgtacc
gaagccagcaaataa

>gi568815597f:148648953_148849495|GENSCAN_predicted_peptide_6|337_aa
MVKGSIQQEELTILNIYAPNTGAPRLIKQVLRDLERDLDSHTLIMGDFNTPLSTVDRSTR
QKVNKDIQELNSPLHQVDLIDIYRTLHHKSTEYTFFSAPHRTYSKIDHIVGSKALLSKCK
RTEIIINCLSDHSAIKLELRIKKLTQNRSTTWKLNNLLLNDYWVHNEMKTEMKMFFETNE
NKDTMYQNLWDTFKAVCRGKFIALNAHKRKQERSKIDTLTSQLKELEKQEQTHSKASRRQ
EITKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIQKKREKNQIDAIKNDKG
DITTDPTEIQTNIREYYKHLYANKLENLEEMDKFLDT

>gi568815597f:148648953_148849495|GENSCAN_predicted_CDS_6|1014_bp
atggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaat
acaggagcacccagattgataaagcaagtccttagagacctagaaagagacttagactcc
cacacattaataatgggagactttaacaccccactgtcaacagtagacagatcaacgaga
cagaaagtcaacaaggatatccaggaattgaactcacctctgcaccaagtggacctaata
gacatctacagaactctccatcacaaatcaacagaatatacattcttctcagcaccacac
cgcacttattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaa
agaacagaaattataataaactgtctctcagaccacagtgcaatcaaactagaactcagg
attaagaaactcactcaaaaccgctcaactacatggaaactgaataacctgctcctgaat
gactactgggtacataatgaaatgaagacagaaatgaagatgttctttgaaaccaacgag
aacaaagacacaatgtaccagaatctctgggacacattcaaagcagtgtgtagaggaaaa
tttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacaccctaaca
tcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaa
gaaataactaagatcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaa
atcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagaccgctagca
agactaatacagaagaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggg
gatatcaccaccgatcccacagaaatacaaactaacatcagagaatactataaacacctc
tacgcaaataaactagaaaatctagaagaaatggataaattcctcgacacatga

>gi568815597f:148648953_148849495|GENSCAN_predicted_peptide_7|549_aa
MTKRGGLGTRQGEATEKGSCHGTLVVRGDLSLPKGAGGGEGGGPPSLERGEKETAHLPRP
GLLHFPGSFLSLRTLLTREGKQPGKMRSLAHESPAQKAAAFSSPAPFCVGGEERALLPAF
LENGFDVAEPAASRATRTREGLFSPCEDTASVATRSHLGSREQALPDTESASTLILVQPS
ELIYSLGMDWFKSVIFMAECRSARELAETHDDWSLLRTGTVSLLPFSVHQILANGTPGDY
IPCMARGGPTPIEPPSLLAQQTEIELQGGSEAGGGAPAIAEAGERSSSPAMEQSWMENDF
DKLREEGFRQSNYSELKEEVRTHGKEVKNLEKKLDQWLTRITNTEKSLKDLMELKTKARE
LRDKCTSLSSRFDQLEERVSVMEDEMNEMKQEEKFKEKRIKRNEQSLQEIWGYVKRPNLR
LIGVPESDRENGTKLENTLQDNNQENLPNLARQANIQIQEIQRMPQRYSLRRATPRQIIV
RFTEVEMKEKMLRAAREKGRVTLKGKPIRLTADLLAETLQARREWGLIFNILKEKNFQPE
FHIQPNEAS

>gi568815597f:148648953_148849495|GENSCAN_predicted_CDS_7|1650_bp
atgaccaagagaggtgggctgggaaccaggcagggcgaggctacagaaaagggaagctgt
cacgggaccctggtggtgaggggcgacctctctctccctaagggcgctgggggaggggag
ggaggaggaccaccaagtctggagcgcggcgagaaggaaacagcccacctacctcgtcca
ggtctgctccattttccaggctctttccttagtctcaggacgctcctcacccgggagggg
aagcagcctgggaaaatgagaagccttgcccacgaatctccagcgcaaaaggcagcagct
ttttcctccccagctcctttctgcgtcggcggcgaagagagagctctgctccctgctttt
ttagaaaatggatttgacgtggccgaacctgcggctagccgtgcgacccgcacaagggag
ggactgttctcaccatgtgaggacacagcatctgtggcaacaaggagccatcttgggagc
agagagcaagctcttccagacactgaatctgccagcaccttgatcttggtccagccttca
gaactgatctatagtttaggtatggattggtttaagtctgtcattttcatggcagagtgc
aggagtgcaagagagttggcagagactcatgatgactggtctctgctcagaactggcaca
gtctcgcttctgccattttccgttcaccaaatcttagcaaacggcacaccaggagattat
atcccgtgcatggctcgggggggtcctacgcccatagagcctccctcattgctggcacag
cagactgagatcgaactgcaaggcggcagcgaggctgggggaggggcacctgccattgcc
gaggctggagaacgcagctcctccccagcaatggaacaaagctggatggagaatgacttt
gacaagttgagggaagaaggcttcagacaatcaaactactccgagctaaaggaggaagtt
cgaacccatggcaaagaagttaaaaaccttgaaaaaaaattagaccaatggctaactaga
ataaccaatacagagaagtccttaaaggacctgatggagctgaaaaccaaggcacgagaa
ctacgtgacaaatgcacaagcctcagtagccgattcgatcaactggaagaaagggtatca
gtgatggaagatgaaatgaatgaaatgaagcaagaagagaagtttaaagaaaaaagaata
aaacgaaatgaacaaagccttcaagaaatatggggctatgtgaaaagaccaaatctacgt
ctgattggtgtacctgaaagtgacagggagaatggaaccaagttggaaaacactctgcag
gataataaccaggagaacctccccaatctagcaaggcaggccaacattcaaattcaggaa
atacagagaatgccacaaagatactccttgagaagagcaactccaagacaaataattgtc
agattcaccgaagttgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcgg
gttaccctcaaagggaagcccatcagactaacagcggatctcttggcagaaactctacaa
gccagaagagagtgggggctaatattcaacattcttaaagaaaagaattttcaaccagaa
tttcatatccagccaaatgaagcttcataa