GENSCAN 1.0	Date run:  3-Nov-116	Time: 19:43:23

Sequence gi568815597f:146198170_146398712 : 200543 bp : 40.68% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   7959   8098  140  2  2   86  115    88 0.660  10.96
 1.02 Term +  14488  14572   85  1  1   70   40    81 0.356  -2.35
 1.03 PlyA +  15264  15269    6                               1.05

 2.06 PlyA -  15876  15871    6                               1.05
 2.05 Term -  20601  20414  188  1  2   58   55    71 0.302  -2.53
 2.04 Intr -  25778  25666  113  1  2   88  101    63 0.780   6.70
 2.03 Intr -  30269  30024  246  1  0   80   65   113 0.757   3.85
 2.02 Intr -  30651  30540  112  1  1   46  101   237 0.054  19.32
 2.01 Init -  41166  41031  136  0  1   76   57   115 0.039   7.55
 2.00 Prom -  44444  44405   40                              -8.55

 3.00 Prom +  46866  46905   40                              -6.55
 3.01 Init +  49222  49418  197  0  2   67   64   128 0.544   6.75
 3.02 Intr +  56573  56679  107  2  2  107   63    40 0.162   2.34
 3.03 Intr +  63578  63670   93  0  0   50   92    62 0.047   1.82
 3.04 Intr +  66393  66520  128  1  2  102   61    66 0.173   4.78
 3.05 Intr +  72941  73078  138  1  0   58   98    30 0.208   0.74
 3.06 Intr +  73608  73769  162  2  0   83   74    80 0.105   5.35
 3.07 Intr +  82055  82206  152  1  2   81   79    35 0.158  -0.06
 3.08 Intr +  83442  83603  162  0  0  105  100    58 0.955   6.87
 3.09 Intr +  88177  88280  104  1  2  122   60    20 0.621   1.50
 3.10 Term +  99882 100546  665  1  2   41   44   573 0.832  41.24
 3.11 PlyA + 103122 103127    6                               1.05

 4.06 PlyA - 104138 104133    6                               1.05
 4.05 Term - 115226 114880  347  0  2    6   42   229 0.206   3.77
 4.04 Intr - 117216 117086  131  2  2   77   94    46 0.402   3.52
 4.03 Intr - 123827 123698  130  0  1  115   31   132 0.634   9.03
 4.02 Intr - 130042 129882  161  0  2   80  111   112 0.958  11.41
 4.01 Init - 132672 132524  149  0  2   74   23    66 0.612  -1.69
 4.00 Prom - 143368 143329   40                              -4.85

 5.02 PlyA - 143664 143659    6                               1.05
 5.01 Sngl - 146546 146052  495  2  0   86   39   652 0.982  55.90
 5.00 Prom - 161318 161279   40                              -3.65

 6.00 Prom + 164547 164586   40                              -3.25
 6.01 Init + 169049 169094   46  1  1  109   66    29 0.611   3.75
 6.02 Intr + 171187 171286  100  2  1   99   46    85 0.464   3.65
 6.03 Term + 171444 171861  418  0  1    9   55   225 0.406   5.06
 6.04 PlyA + 172641 172646    6                               1.05

 7.05 PlyA - 173417 173412    6                               1.05
 7.04 Term - 178609 178305  305  2  2   62   45   130 0.200   0.45
 7.03 Intr - 178824 178646  179  2  2   36  111    97 0.376   5.44
 7.02 Intr - 179418 179388   31  1  1  100   94    33 0.477   1.37
 7.01 Init - 185335 185188  148  1  1   56  110    84 0.655   7.70
 7.00 Prom - 186923 186884   40                              -7.35

 8.04 PlyA - 187469 187464    6                               1.05
 8.03 Term - 189205 189034  172  0  1   46   41   180 0.470   5.42
 8.02 Intr - 190811 190629  183  1  0   70   64   100 0.536   3.78
 8.01 Intr - 195951 195744  208  1  1   82   68   213 0.295  15.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  30667  30540  128  1  2   49  101   228 0.803  19.88


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_1|74_aa
MLKIYSLAPDPNQQYTNIKEKVTETKITHLMKIYDLAKENEAENIHSSEIRHRPLRMPDQ
ISFPNAENQLLLTF

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_1|225_bp
atgctgaaaatctacagcctggcccctgatccaaatcagcaatatactaatattaaggaa
aaagtaacagaaaccaaaatcacccacctaatgaagatatatgatctagcaaaagaaaat
gaggctgagaacatccacagctcagaaatccgacataggccacttcgcatgcctgatcag
ataagctttcccaatgctgaaaaccaactgcttctaaccttttaa

>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_2|264_aa
MVRAREGFAGEVIFELGDVFSEVGSEAFCWEENGEQKEGKRLQQRGGRGGGGGGGDREDT
RPAPRSAVGAAGALAVLRDPRAWREAGSKSQKLLFRSARVQGGGQFCPSGSAFPGVEREP
TAGLGGAERRNARFWRGERGQGRQAKRPAPSQPASPLPGGGTWAGTCLACAPNSESTERQ
VLVTASVTPAFPPLEHSIGEADGTPLVLTFVAPAELLYAEALQVSSVWFRVISGHMNAFL
SIIGIYWAGCLPAITIFSMKRPGE

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_2|795_bp
atggtgagggctagggaaggttttgcaggggaggtgatatttgaactaggagatgtcttt
agtgaagtaggaagtgaagccttttgctgggaagaaaatggggaacagaaagaaggaaag
aggctacagcagagaggcggccgcggcggcggcggcggaggaggcgaccgagaagatacc
cgccctgcgccccgctctgctgtgggcgctgctggcgctctggctgtgctgcgcgacccc
cgcgcatggagggaggccggcagcaagtctcagaaactcctttttcgtagtgccagggtg
cagggaggtgggcagttttgcccttcaggttccgcgtttcctggggtcgagcgagagccg
acggcgggcctcggaggggctgagcgaaggaatgccagattctggcgtggagagcggggg
cagggccgccaagccaaacggcctgcaccttcgcagccagcctcgcctttgccagggggc
ggcacatgggccggaacttgtctggcatgtgccccaaattcagagtcaactgagcggcag
gtcttagtcacagcatctgtgactcctgctttcccacctttagaacattctataggagag
gctgatggcaccccgctggttttgacattcgttgctccagctgaactgctctatgctgaa
gccctgcaggtctcaagtgtttggttcagagtaatttcaggccatatgaatgctttctta
agtatcattggaatttactgggctggctgtctgccagctattaccatatttagcatgaag
agacctggggaatga

>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_3|635_aa
MGRLDYSDEPDVITGVLIEKGGRSVRERDVTMRDHQPKPKTNKQKQKLWLEAGRGKEQCL
SSSSRRHCHAPGGVGGDASNPLGFDLAERGLSFQLLGLFLKKMRYVNTVPATPNFLFEMK
VPHPEPPALRSRGIMKCGIKLLLGQGGPLHSVGSTSLNSVMLNEARFQLCRAGMQPCLNL
GGGAQEIIQAPLPRAAQGRRPGLQGPPQSLSPRNMILTPPKVASSCSALDKRAGHCCWGD
ISRQARESCRLLSAYLLAGKTNIGQLFSKGGMQSTEDPLTYYLCQALYSSQQCWKIGITI
LKLQMRKLRSGDLSVSEIPNPRGMDRLPEGSSETCVRKEKLSGLSSLLHDHSFSPTYHCL
AWNGSWKEDSRETIETDNRKDAVISELSLEHFSPVCQGFREGFPNIQAGCQGFLTLPGAP
APDSPSPPLPGGVAAAGPPRRRPEQQQQQQEPASMMKFKPNQTRTYDREGFKKRAACLCF
RSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGIFEQ
NQDRKHRTYVYVLTVTEILEDWEDSVNIGRKREWFKVEDAIKVLQCHKPVHAEYLEKLKL
GCSPANGNSTVPSLPDNNALFVTAAQTSGLPSSVR

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_3|1908_bp
atgggaagattagattattcagacgaacctgatgtaatcacaggggtccttatagaaaaa
ggaggcaggagtgtcagagaaagagatgtgacaatgagggaccatcagccaaaaccaaaa
acaaacaaacaaaaacaaaaactgtggttagaagctggaagaggcaaagaacagtgtctc
tcctccagctccaggagacattgtcatgctccaggtggggtgggtggtgatgccagtaat
cccctgggctttgacttagctgagcgtggactcagttttcagttgcttggcttgttcttg
aagaaaatgagatatgtcaacacagtgcctgccacacccaacttcctctttgagatgaaa
gtgccccacccagagccccctgctttgagaagcagagggataatgaagtgtggcataaag
cttctcctgggtcagggtggcccactccacagtgttggcagcaccagtctcaacagtgtg
atgctgaatgaagctaggttccagctgtgtagagctggcatgcagccctgcctgaacctc
ggaggaggcgcccaggagatcatccaggcaccgctgcctagggccgcgcagggaagacgg
ccagggctccagggtccgcctcagtcactgtcaccccgcaacatgattctgactccccca
aaggtggccagcagctgctccgcacttgacaaacgtgctggacactgctgctggggagac
atcagccggcaagcaagggaaagttgcagacttctcagtgcttacctcctagctgggaag
acaaatattggacaactattctctaaaggaggcatgcagagtactgaagacccactgacc
tattatttgtgtcaggcactttattcctcacaacaatgctggaagattggtataactatt
ctcaaattacagatgaggaaactgaggtctggggatctgtctgtgtcggagatccccaac
ccccggggcatggacaggcttcctgagggctcctcagaaacatgtgttagaaaagaaaag
ctttccggtctgtccagtctcctccatgaccacagtttctcacccacataccattgtctg
gcttggaatggatcctggaaggaggactcaagagaaaccatagaaacagacaacaggaaa
gatgctgtcatttctgagttatctttggagcatttctctccagtgtgtcagggtttcaga
gaaggctttcctaatattcaggctggctgtcagggtttcctaacgctcccgggcgctcct
gcgcccgactcgccctcgcccccactccccggcggggtggcggcggccgggcccccacgg
cggcggccggagcagcagcagcagcagcaggagcccgcctctatgatgaagttcaagccc
aaccagacgcggacctacgaccgcgagggcttcaagaagcgggcggcgtgcctgtgcttc
cggagcgagcaggaggacgaggtgctgctggtgagtagcagccggtacccagaccagtgg
attgtcccaggaggaggaatggaacccgaggaggaacctggcggtgctgccgtgagggaa
gtttatgaggaggctggagtcaaaggaaaactaggcagacttctgggcatatttgagcag
aaccaagaccgaaagcacagaacatatgtttatgttctaacagtcactgaaatattagaa
gattgggaagattctgttaatattggaaggaagagagagtggttcaaagtagaagatgct
atcaaagttctccagtgtcataaacctgtacatgcagagtatctggaaaagctaaagctg
ggttgttccccagccaatggaaattctacagtcccttcccttccggataataatgccttg
tttgtaaccgctgcacagacctctgggttgccatctagtgtaagatag

>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_4|305_aa
MDEAGNHHSQQTITRTENQTPHVLTHRWELNDENAWTQGGEHHTLGPVRGYIIEQGVCDL
VLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSQPYSFIEFALDSKANNLSSLSKKYR
QDAKYLNMRSTYAKLAAVAVFFIMLIVNEATWLSPLYATFRPPRASKKTKAEKPIQETAT
SKVEATSDHTERLLKSQKAIDAGVVAEKMEHLYSANGNVNSFSRCAKHFGDFSKNRQQLP
LDPAIPLLDIYLKEYRLFCHKDTCTHMFIAALFTIAKTWNQPKCPSVVVWIKKMWYTYTV
EYTQP

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_4|918_bp
atggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaaca
ccgcatgttctcactcacagatgggagttgaacgatgagaatgcatggacacagggtggg
gaacatcacacactggggcctgtcaggggctacattattgagcagggggtgtgtgatttg
gttttatgtgaagctgccttccctaagaagttggcttttgcctacctagaagatttgcac
tcagaatttgatgaacagcatggaaagaaggtgcccactgtgtcccaaccctattccttt
attgaatttgcattggattcaaaggctaacaatttgtccagtctgtccaagaaataccgc
caggatgcgaagtacttgaacatgcgttccacttacgccaaacttgcagcagtagctgta
tttttcatcatgttaatagtaaatgaggccacttggctgagcccattatatgcaacattc
agacccccaagggcatcaaagaagacaaaagcagaaaaacctatccaagaaacagcaact
tcaaaggttgaagcaacatcagaccacacagaacggctattaaaaagtcaaaaagcaata
gatgccggcgtggttgcagagaaaatggaacacttatatagtgctaatgggaatgtaaat
tcgttcagccgttgtgcaaagcactttggtgatttctcaaagaaccggcaacaattacca
ctcgacccagcgatcccattattggatatatacctaaaggaatatagattgttctgccat
aaagacacatgcacgcatatgttcatcgcagcactattcacgatagcaaagacatggaat
caacctaaatgcccatcagtggtagtctggataaagaaaatgtggtacacgtacaccgtg
gaatatacacagccataa

>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_5|164_aa
MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGF
MCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTE
WLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_5|495_bp
atggtcaactccgtcgtcttttttgacatcaccgtcgacggcaagcccttgggccgcatc
tccatcaaactgtttgcagacaagattccaaagacagcagaaaactttcgtgctctgagc
actggagagaaaggatttcgttataagggttcctgctttcacagaattattccagggttt
atgtgtcagggtggtgacttcacacgccctaatggcaccgatgacaagtccatctatggg
gagaaatttgatgatgagaacctcatccgaaagcatacaggttctggcatcttgtccatg
gtaaatgctggacccaacacaaatggctcccagttattcatctgcactgccaagactgag
tggttggatggcaagcatgtggcctttggcaaggtgaaagaacgtgtgaatattgtggaa
gccatggagcactttgggtacaggaatagcaagaccagcaagaagatcaccattgctgac
tgtggacaattctaa

>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_6|187_aa
MKMKATSSGPGPPVAGPDHRPAEPPRLHGAEGALEALPVAAPRGAKKSTGTHEPPSPRSL
PWWSPRAEHRIRRWQRKLRSGPKSDWAGRAQAPSLGEGGAKNGKSHPGSHRAFSLPRAPR
RLGPGSQPGRFRGFLKQARGRAGEGHSAILLAPESPNAQVSNVTSATYRSNLSGLPRPCS
VVLLGGP

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_6|564_bp
atgaagatgaaggccacctcttctgggccaggtcctcccgttgcaggacccgaccaccgc
ccagctgagcccccgcggctccacggcgcagaaggtgcactggaggccctgcccgttgcc
gccccgcggggtgccaagaagtcaacggggacccacgagccaccctcaccacgatccctg
ccctggtggagcccccgtgcggaacacaggatccgaagatggcagcggaagctccgcagc
ggccccaaaagcgactgggcagggagggcacaggctccctcactgggtgaaggcggcgca
aagaacgggaagagccatcccgggagccaccgggcgttcagcctccctagggcccccagg
cggctcgggccggggtctcaaccggggcgtttccgggggtttctgaagcaggcgaggggc
agggcgggcgaaggccattcggctatccttctggctccagaatctcccaacgcgcaggtg
tccaacgtgaccagcgcgacttaccgctccaatctctccggtcttccaaggccttgctca
gtcgtcctgctgggagggccctga

>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_7|220_aa
MVGSPLPVGLGFTLKGAVRTEVSGKGPEPWGLSSGDGDGRRGKAGQESSGRIAAHFGQDR
LFFKLQKSGESANAVPHYHKLCSRVSHIWGNRRGQHIRSAMDKPRPGKTTFVIMVSPLPA
SHASPFTRTVTCPAHPPPPPPPTPSPPSPHTQLGLSGPTSGPEPAPTAREILRGEAAAPA
LPHLHRSRPIRDVTDSAFPSPRLPFCRSAYQPAAGAGRGK

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_7|663_bp
atggtaggctcccctcttcctgtgggtttgggttttaccttgaaaggggctgtcagaaca
gaagtttcagggaaggggccagagccctggggactttcctcaggtgatggtgatggaaga
agaggcaaggcaggacaggaaagctcagggaggatcgcagcgcatttcggccaagacaga
ctgttctttaaactacaaaaatcaggggaaagcgcgaacgcagtcccccactaccacaaa
ttatgcagtcgagtttcccacatttggggaaatcgcaggggtcagcacatccggagtgca
atggataagcctcgccctgggaaaaccaccttcgtgatcatggtatctcccctgccagcc
tcacacgcttcaccctttacacgcacggtcacttgccccgcgcaccccccccccccaccc
ccccccacccccagccctcctagccctcacacacagctgggactctcaggtccgaccagc
ggtcctgaacccgctcccacggcacgggaaatccttcgtggcgaagcagcagcccctgcg
ctgcctcatttacatagaagtcgccctatccgtgatgtcaccgacagtgcctttcccagt
ccccgtctgcctttctgccgctcagcctaccaacccgctgccggagccggcagggggaag
tga

>gi568815597f:146198170_146398712|GENSCAN_predicted_peptide_8|187_aa
XPTRQYNCERPWKTGAMRAVNRVGLIGDPQIGRFWNQDDLAPHLQQKPPETPGPDPDLSR
LGAQGKLNARGTRALAKPFPYKEQACYVYNPMAPVPSTISTWFYELSTRSPQHRNPTNSH
ECYREKQGLASTTPANPQPPPALLALTHSWDSQVRPAVLNPLPRHGKSFVAKQQPLRCLI
YIETPYR

>gi568815597f:146198170_146398712|GENSCAN_predicted_CDS_8|564_bp
nagcccacccggcagtacaactgtgaaaggccttggaaaactggagcgatgagagcggtg
aatcgtgttggtctcattggagacccgcagattgggagattctggaaccaggacgacctt
gcccctcacctgcagcagaagcccccggaaacgcccggccccgacccggacctgagccgc
ctgggggcccaagggaagctgaacgcccggggcaccagggcactggcaaagccctttcca
tacaaagagcaagcgtgttatgtctacaacccaatggcaccagttccaagtacaatttct
acttggttctatgagctgagtacacgttccccccagcacagaaatcctacaaactcccat
gaatgctatagggaaaagcaggggctagccagcaccactccagccaatccccaaccaccc
ccagccctcctagccctcacacacagctgggactctcaggtccgaccagcggtcctgaac
ccgctcccacggcacgggaaatccttcgtggcgaagcagcagcccctgcgctgcctcatc
tacatagaaacgccctatcggtga