GENSCAN 1.0	Date run:  3-Nov-116	Time: 19:28:21

Sequence gi568815591f:74074384_74295305 : 220922 bp : 50.33% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5595   5597    3  2  0   93   95     0 0.390   1.20
 1.02 Intr +   6167   6254   88  1  1   68   70    47 0.370   0.44
 1.03 Intr +  11365  11461   97  2  1  102   91   127 0.852  13.47
 1.04 Intr +  15350  15428   79  2  1   55  101    25 0.325   0.05
 1.05 Intr +  18153  18313  161  2  2   72   43    77 0.405   0.39
 1.06 Intr +  22239  22377  139  0  1   89   89   172 0.918  17.87
 1.07 Intr +  22697  22806  110  1  2   81  105   166 0.997  16.68
 1.08 Intr +  24649  24855  207  1  0   73   84   223 0.982  18.59
 1.09 Intr +  31492  31597  106  1  1   75   80   148 0.977  12.92
 1.10 Intr +  31694  31860  167  1  2   91   89   158 0.994  14.96
 1.11 Intr +  32627  32810  184  2  1   71   87   245 0.988  22.49
 1.12 Intr +  33488  33574   87  1  0   94   78   156 0.997  15.37
 1.13 Intr +  34522  34653  132  0  0   68  101   327 0.997  32.84
 1.14 Intr +  37265  37324   60  1  0  108  101    79 0.999  10.13
 1.15 Intr +  37550  37615   66  1  0  140  105    98 0.999  15.80
 1.16 Intr +  41419  41575  157  0  1   55  113   317 0.954  30.48
 1.17 Intr +  46200  46255   56  1  2   76   92    81 0.822   6.00
 1.18 Intr +  46509  46666  158  2  2   63  105   271 0.999  25.11
 1.19 Term +  46756  46918  163  1  1   83   52   169 0.994  10.21
 1.20 PlyA +  48114  48119    6                               1.05

 2.00 Prom +  91024  91063   40                              -0.36
 2.01 Init + 100001 100059   59  1  2   56   72   209 0.663  16.88
 2.02 Intr + 113228 113415  188  2  2  116  113   117 0.994  16.33
 2.03 Intr + 113936 114022   87  0  0   55   75   100 0.906   5.34
 2.04 Intr + 120358 120495  138  2  0   96  102    59 0.981   8.54
 2.05 Term + 120786 120925  140  1  2  115   52    74 0.987   4.63
 2.06 PlyA + 122690 122695    6                               1.05

 3.03 PlyA - 122732 122727    6                               1.05
 3.02 Term - 129095 129001   95  0  2   62   54   106 0.643   2.59
 3.01 Init - 132191 132143   49  2  1   66  111    -5 0.249   0.79
 3.00 Prom - 138211 138172   40                              -1.56

 4.00 Prom + 140343 140382   40                              -7.76
 4.01 Init + 141593 141686   94  1  1  104  115   110 0.960  13.84
 4.02 Intr + 142442 142481   40  0  1  114   65    26 0.697   0.18
 4.03 Intr + 145834 145871   38  1  2  151   96    14 0.746   6.41
 4.04 Intr + 146321 146351   31  0  1  114   84     0 0.654  -0.61
 4.05 Intr + 147254 147309   56  2  2   70  100    66 0.662   4.62
 4.06 Intr + 149341 149400   60  2  0  127   94   104 0.999  13.61
 4.07 Intr + 149635 149814  180  2  0  111   69    36 0.931   3.84
 4.08 Term + 150256 150359  104  2  2  116   49    84 0.940   5.74
 4.09 PlyA + 151007 151012    6                               1.05

 5.12 PlyA - 152837 152832    6                               1.05
 5.11 Term - 157833 157706  128  1  2   88   42    52 0.731  -0.96
 5.10 Intr - 161262 161145  118  0  1   77   89   126 0.948  11.64
 5.09 Intr - 163059 162979   81  0  0  112   58   120 0.996  11.23
 5.08 Intr - 164605 164540   66  1  0   77   82   100 0.936   7.40
 5.07 Intr - 165712 165555  158  2  2   84   91   251 0.947  24.73
 5.06 Intr - 168863 168763  101  1  2   89  109   109 0.931  12.85
 5.05 Intr - 172380 172279  102  2  0   58   80    88 0.941   4.29
 5.04 Intr - 174735 174629  107  0  2   32   96    92 0.992   3.41
 5.03 Intr - 175397 175356   42  2  0   79  101    44 0.901   3.24
 5.02 Intr - 178115 178046   70  1  1   78  105    48 0.969   4.68
 5.01 Init - 180000 179888  113  0  2   84   65   146 0.923  11.61
 5.00 Prom - 183812 183773   40                              -1.96

 6.05 PlyA - 184510 184505    6                               1.05
 6.04 Term - 205458 205262  197  1  2   61   43    91 0.131  -0.53
 6.03 Intr - 212599 212551   49  1  1   41  105    61 0.165   1.35
 6.02 Intr - 214838 214679  160  1  1  132  100    66 0.714  12.19
 6.01 Init - 215262 215189   74  0  2   73   15   114 0.292   1.15

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 115290 115354   65  1  2   85   92    92 0.972   7.74
S.002 Intr + 115439 115535   97  1  1   54   45   122 0.920   4.08


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:74074384_74295305|GENSCAN_predicted_peptide_1|739_aa
MQKKSCMSNVTEYVRSDVSPGTVADKELLQGSELPVCASCGQRIYDGQYLQALNADWHAD
CFRASHGSLSPVGGRKVRKNGRLGAGPEMPLAGPASRKVMTRLGLVQASLWLTYCLCEVP
SRKPPVHNPQGCRIPGSISLAAGCCDCSASLSHQYYEKDGQLFCKKDYWARYGESCHGCS
EQITKGLVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCGHCYYQTVVTPVIE
QILPDSPGSHLPHTVTLVSIPASSHGKRGLSVSIDPPHGPPGCGTEHSHTVRVQGVDPGC
MSPDVKNSIHVGDRILEINGTPIRNVPLDEIDLLIQETSRLLQLTLEHDPHDTLGHGLGP
ETSPLSSPAYTPSGEAGSSARQKPVLRSCSIDRSPGAGSLGSPASQRKDLGRSESLRVVC
RPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVM
RCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGM
AYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYT
VVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLD
RYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGHLPLGPQLEQLDRGF
WETYRRGESGLPAHPEVPD

>gi568815591f:74074384_74295305|GENSCAN_predicted_CDS_1|2220_bp
atgcaaaaaaaatcttgcatgagcaatgtaactgaatatgtcagatctgatgtttcacct
ggaactgtggctgacaaggagctcctacaaggaagcgagttgcccgtgtgtgcaagctgc
ggccagaggatctatgatggccagtacctccaggccctgaacgcggactggcacgcagac
tgcttcagagctagccatgggagcctgagtccagttggaggtaggaaagtcagaaaaaac
ggccgcctcggagctggccctgagatgccccttgcaggccctgcctcccggaaggttatg
accaggcttggactggtccaggcttccctttggctcacatactgcctctgcgaggtcccc
tccaggaagcctcctgtgcacaacccccagggctgccgcatccctggtagcatctccttg
gcagctgggtgttgtgactgcagtgcctccctgtcgcaccagtactatgagaaggatggg
cagctcttctgcaagaaggactactgggcccgctatggcgagtcctgccatgggtgctct
gagcaaatcaccaagggactggttatggtggctggggagctgaagtaccaccccgagtgt
ttcatctgcctcacgtgtgggacctttatcggtgacggggacacctacacgctggtggag
cactccaagctgtactgcgggcactgctactaccagactgtggtgacccccgtcatcgag
cagatcctgcctgactcccctggctcccacctgccccacaccgtcaccctggtgtccatc
ccagcctcatctcatggcaagcgtggactttcagtctccattgaccccccgcacggccca
ccgggctgtggcaccgagcactcacacaccgtccgcgtccagggagtggatccgggctgc
atgagcccagatgtgaagaattccatccacgtcggagaccggatcttggaaatcaatggc
acgcccatccgaaatgtgcccctggacgagattgacctgctgattcaggaaaccagccgc
ctgctccagctgaccctcgagcatgaccctcacgatacactgggccacgggctggggcct
gagaccagccccctgagctctccggcttatactcccagcggggaggcgggcagctctgcc
cggcagaaacctgtcttgaggagctgcagcatcgacaggtctccgggcgctggctcactg
ggctccccggcctcccagcgcaaggacctgggtcgctctgagtccctccgcgtagtctgc
cggccacaccgcatcttccggccgtcggacctcatccacggggaggtgctgggcaagggc
tgcttcggccaggctatcaaggtgacacaccgtgagacaggtgaggtgatggtgatgaag
gagctgatccggttcgacgaggagacccagaggacgttcctcaaggaggtgaaggtcatg
cgatgcctggaacaccccaacgtgctcaagttcatcggggtgctctacaaggacaagagg
ctcaacttcatcactgagtacatcaagggcggcacgctccggggcatcatcaagagcatg
gacagccagtacccatggagccagagagtgagctttgccaaggacatcgcatcagggatg
gcctacctccactccatgaacatcatccaccgagacctcaactcccacaactgcctggtc
cgcgagaacaagaatgtggtggtggctgacttcgggctggcgcgtctcatggtggacgag
aagactcagcctgagggcctgcggagcctcaagaagccagaccgcaagaagcgctacacc
gtggtgggcaacccctactggatggcacctgagatgatcaacggccgcagctatgatgag
aaggtggatgtgttctcctttgggatcgtcctgtgcgagatcatcgggcgggtgaacgca
gaccctgactacctgccccgcaccatggactttggcctcaacgtgcgaggattcctggac
cgctactgccccccaaactgccccccgagcttcttccccatcaccgtgcgctgttgcgat
ctggaccccgagaagaggccatcctttgtgaagctggaacactggctggagaccctccgc
atgcacctggccggccacctgccactgggcccacagctggagcagctggacagaggtttc
tgggagacctaccggcgcggcgagagcggactgcctgcccaccctgaggtccccgactga

>gi568815591f:74074384_74295305|GENSCAN_predicted_peptide_2|203_aa
MADFDTYDDRAYSSFGGGRGSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDA
IFKDLSIRSVRLVRDKDTDKFKGCGSKEQEEEGIRAAFSCLQGFLKEVCLLCFRDDFLGG
RGGSRPGDRRTGPPMGSRFRDGPPLRGSNMDFREPTEEERAQRPRLQLKPRTVATPLNQV
ANPNSAIFGGARPREEVVQKEQE

>gi568815591f:74074384_74295305|GENSCAN_predicted_CDS_2|612_bp
atggcggacttcgacacctacgacgatcgggcctacagcagcttcggcggcggcagaggg
tcccgcggcagtgctggtggccatggttcccgtagccagaaggagttgcccacagagccc
ccctacacagcatacgtaggaaatctacctttcaatacggttcagggcgacatagatgct
atctttaaggatctcagcataaggagtgtacggctagtcagagacaaagacacagataaa
tttaaagggtgcgggagcaaagagcaggaagaagaagggatccgagcagcattctcctgc
ctgcagggcttcctgaaggaagtgtgcctgctgtgcttcagggatgacttcttagggggc
aggggaggtagtcgcccaggcgaccggcgaacaggcccccccatgggcagccgcttcaga
gatggccctcccctccgtggatccaacatggatttcagagaacccacagaagaggaaaga
gcacagagaccacgactccagcttaaacctcgaacagtcgcgacgcccctcaatcaagta
gccaatcccaactctgctatcttcgggggtgccaggcctagagaggaagtcgttcaaaag
gagcaagaatga

>gi568815591f:74074384_74295305|GENSCAN_predicted_peptide_3|47_aa
MPSALDSGPRFLPTVTEQNCSCHRKQKPNACGHQQNYRREEKLFNSC

>gi568815591f:74074384_74295305|GENSCAN_predicted_CDS_3|144_bp
atgccaagtgcactggattcaggaccacgtttccttcccacggtaaccgagcagaactgc
tcctgccacagaaaacagaagcccaatgcttgcggccatcagcagaattatcggagagag
gaaaaacttttcaacagctgctga

>gi568815591f:74074384_74295305|GENSCAN_predicted_peptide_4|200_aa
MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLKDKLLQFYPSLEGSR
HGSEEAYIDPIAMEYYNWGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGD
LSLSLALKTGPTSGLCPSASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGS
PDEEDGEPDYVNGEVAATEA

>gi568815591f:74074384_74295305|GENSCAN_predicted_CDS_4|603_bp
atgagctcggggactgaactgctgtggcccggagcagcgctgctggtgctgttgggggtg
gcagccagtctgtgtgtgcgctgctcacgcccaggtgcaaagaggtcagagaaaatctac
cagcagagaagtctgaaggacaagctgttgcaattctaccccagcctggagggaagcaga
cacgggtcggaggaagcctacatagaccccattgccatggagtattacaactgggggcgg
ttctcgaagcccccagaagatgatgatgccaattcctacgagaatgtgctcatttgcaag
cagaaaaccacagagacaggtgcccagcaggagggcataggtggcctctgcagaggggac
ctcagcctgtcactggccctgaagactggccccacttctggtctctgtccctctgcctcc
ccggaagaagatgaggaatctgaggattatcagaactcagcatccatccatcagtggcgc
gagtccaggaaggtcatggggcaactccagagagaagcatcccctggcccggtgggaagc
ccagacgaggaggacggggaaccggattacgtgaatggggaggtggcagccacagaagcc
tag

>gi568815591f:74074384_74295305|GENSCAN_predicted_peptide_5|361_aa
MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
RVCKTFQMAEYLKLEFIKVGNWIHSHENSGRSELSFADGRPPGKAVSEDNGPGGQLEQRL
H

>gi568815591f:74074384_74295305|GENSCAN_predicted_CDS_5|1086_bp
atggaggtggaggccgtctgtggtggcgcgggcgaggtggaggcccaggactctgaccct
gcccctgccttcagcaaggcccccggcagcgccggccactacgaactgccgtgggttgaa
aaatataggccagtaaagctgaatgaaattgtcgggaatgaagacaccgtgagcaggcta
gaggtctttgcaagggaaggaaatgtgcccaacatcatcattgcgggccctccaggaacc
ggcaagaccacaagcattctgtgcttggcccgggccctgctgggcccagcactcaaagat
gccatgttggaactcaatgcttcaaatgacaggggcattgacgttgtgaggaataaaatt
aaaatgtttgctcaacaaaaagtcactcttcccaaaggccgacataagatcatcattctg
gatgaagcagacagcatgaccgacggagcccagcaagccttgaggagaaccatggaaatc
tactctaaaaccactcgcttcgcccttgcttgtaatgcttcggataagatcatcgagccc
attcagtcccgctgtgcagtcctccggtacacaaagctgaccgacgcccagatcctcacc
aggctgatgaatgttatcgagaaggagagggtaccctacactgatgacggcctagaagcc
atcatcttcacggcccagggagacatgaggcaggcgctgaacaacctgcagtccaccttc
tcaggatttggcttcattaacagtgagaacgtgttcaaggtctgtgacgagccccaccca
ctgctggtaaaggagatgatccagcactgtgtgaatgccaacattgacgaagcctacaag
attcttgctcacttgtggcatctgggctactcaccagaagatatcattggcaacatcttt
cgagtgtgtaaaactttccaaatggcagaatacctgaaactggagtttatcaaggtcgga
aattggatacactcacatgaaaatagcggaaggagtgaactctcttttgcagatggcagg
cctcctggcaaggctgtgtcagaagacaatggccccggtggccagttagagcagagactt
cactga

>gi568815591f:74074384_74295305|GENSCAN_predicted_peptide_6|159_aa
MLRPLPARRCPPAAPPPGAGDPRDRPQLSFVGRPGFAHIHLRAGHLVVLTSRLVKRILQP
CYACKDVSGHWEGRQLGKYYSEQQPAVNRPYLAAAQADSCTRNFHGTVSHLQTSSVTIRV
GGQQIWGLGSAAFPNAASCDSILPLWQSNESVEDLQTRS

>gi568815591f:74074384_74295305|GENSCAN_predicted_CDS_6|480_bp
atgctgcggcccctccctgcgcggcgctgcccaccggctgcaccccctcctggcgccggg
gatccccgcgataggccgcagctgtcctttgtggggcgtccagggttcgcccacatccac
ctccgcgctgggcacctggtggtgcttacatcgcgtttggtgaaacgcatcctccagcca
tgctatgcttgcaaagatgtctctggtcattgggaaggacggcagcttgggaagtattat
tcagagcaacagcctgcggtcaacagaccttacctggccgctgctcaagctgactcatgc
accaggaatttccacgggactgtgtcacacttgcaaacgtcatctgtgactatccgggtg
ggaggacagcagatctggggactgggctctgcagccttcccaaatgcagcttcctgtgat
tccattcttccactttggcagtcgaatgagtcagtggaagatttgcaaacacggagctaa