Result of FASTA (ccds) for pF1KSDA0975
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0975, 1504 aa
  1>>>pF1KSDA0975 1504 - 1504 aa - 1504 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5182+/-0.00122; mu= -3.3658+/- 0.074
 mean_var=365.3297+/-74.290, 0's: 0 Z-trim(112.1): 32  B-trim: 0 in 0/54
 Lambda= 0.067101
 statistics sampled from 12867 (12887) to 12867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.396), width:  16
 Scan time:  6.460

The best scores are:                                      opt bits E(32554)
CCDS33767.1 NISCH gene_id:11188|Hs108|chr3         (1504) 9993 982.8       0
CCDS63651.1 NISCH gene_id:11188|Hs108|chr3         ( 515) 3292 333.8 8.4e-91
CCDS63652.1 NISCH gene_id:11188|Hs108|chr3         ( 583) 3284 333.1 1.6e-90


>>CCDS33767.1 NISCH gene_id:11188|Hs108|chr3              (1504 aa)
 initn: 9993 init1: 9993 opt: 9993  Z-score: 5243.1  bits: 982.8 E(32554):    0
Smith-Waterman score: 9993; 99.8% identity (99.9% similar) in 1504 aa overlap (1-1504:1-1504)

               10        20        30        40        50        60
pF1KSD MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS33 TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD SDSLESIPAGQAASDDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SDSLESIPAGQAASDDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD DFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEEEEEDVAENRYFEMGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DFIQRLSTLIRQAIERQLPAWIEAANQREEGQGEQGEEEDEEEEEEEDVAENRYFEMGPP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD DVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DVEEEEGGGQGEEEEEEEEDEEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD SIRQFAACLVLTDFGIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SIRQFAACLVLTDFGIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD VLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPILYGSHTSLQEFLRQLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPILYGSHTSLQEFLRQLLT
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD FYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD VKSAAIPYWLLLTPQHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VKSAAIPYWLLLTPQHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCT
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD QPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRASLQDLKTVVIAKTPGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRASLQDLKTVVIAKTPGTG
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD GSAQGSFADGQPAERRASNDQRPQEVPAEALAPAPVEVPAPAPAAASASGPAKTPAPAEA
       :: ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS33 GSPQGSFADGQPAERRASNDQRPQEVPAEALAPAPAEVPAPAPAAASASGPAKTPAPAEA
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD STSALVPEETPVEAPAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 STSALVPEETPVEAPAPPPAEAPAQYPSEHLIQATSEENQIPSHLPACPSLRHVASLRGS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD AIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLSTKAVYFVLHDGLRRYFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AIIELFHSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLSTKAVYFVLHDGLRRYFS
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KSD EPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTR
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KSD DSYLTHCFLQHLMVVLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DSYLTHCFLQHLMVVLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYP
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KSD SEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCCRGPLRPKTLLLTSSEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCCRGPLRPKTLLLTSSEI
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KSD FLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDDVQGH
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KSD DLMGSVTLDHFGEVPGGPARASQGREVQWQVFVPSAESREKLISLLARQWEALCGRELPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLMGSVTLDHFGEVPGGPARASQGREVQWQVFVPSAESREKLISLLARQWEALCGRELPV
             1450      1460      1470      1480      1490      1500

           
pF1KSD ELTG
       ::::
CCDS33 ELTG
           

>>CCDS63651.1 NISCH gene_id:11188|Hs108|chr3              (515 aa)
 initn: 3390 init1: 3292 opt: 3292  Z-score: 1743.7  bits: 333.8 E(32554): 8.4e-91
Smith-Waterman score: 3292; 99.6% identity (100.0% similar) in 512 aa overlap (1-512:1-512)

               10        20        30        40        50        60
pF1KSD MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS63 TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
       :::::::::::::::::::::::::::::::.                            
CCDS63 AAPCIRPSSSPPTVAPASASLPQPILSNQGILGDE                         
              490       500       510                              

              550       560       570       580       590       600
pF1KSD SDSLESIPAGQAASDDLRDVPGAVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQ

>>CCDS63652.1 NISCH gene_id:11188|Hs108|chr3              (583 aa)
 initn: 3284 init1: 3284 opt: 3284  Z-score: 1738.8  bits: 333.1 E(32554): 1.6e-90
Smith-Waterman score: 3284; 99.8% identity (100.0% similar) in 510 aa overlap (1-510:1-510)

               10        20        30        40        50        60
pF1KSD MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS63 TLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RTKVLAQFGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEVKSKLSNPEKKGGEDSRLS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD AAPCIRPSSSPPTVAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGC
       ::::::::::::::::::::::::::::::                              
CCDS63 AAPCIRPSSSPPTVAPASASLPQPILSNQGNRVCILLLVEPHSPAWAPWLGWGWGRGAST
              490       500       510       520       530       540




1504 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:54:21 2016 done: Thu Nov  3 18:54:23 2016
 Total Scan time:  6.460 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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