Result of FASTA (ccds) for pF1KSDA0849
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0849, 953 aa
  1>>>pF1KSDA0849 953 - 953 aa - 953 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6093+/-0.000924; mu= 9.8776+/- 0.056
 mean_var=107.1158+/-21.747, 0's: 0 Z-trim(108.6): 21  B-trim: 562 in 1/50
 Lambda= 0.123922
 statistics sampled from 10322 (10337) to 10322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.318), width:  16
 Scan time:  4.420

The best scores are:                                      opt bits E(32554)
CCDS42164.1 CYLD gene_id:1540|Hs108|chr16          ( 953) 6486 1170.8       0
CCDS45482.1 CYLD gene_id:1540|Hs108|chr16          ( 956) 6470 1167.9       0


>>CCDS42164.1 CYLD gene_id:1540|Hs108|chr16               (953 aa)
 initn: 6486 init1: 6486 opt: 6486  Z-score: 6265.8  bits: 1170.8 E(32554):    0
Smith-Waterman score: 6486; 100.0% identity (100.0% similar) in 953 aa overlap (1-953:1-953)

               10        20        30        40        50        60
pF1KSD MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DIIPESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DIIPESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLPFSL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD TKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKENPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKENPP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD FYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD DSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD KVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLED
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD TPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD LPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNI
              850       860       870       880       890       900

              910       920       930       940       950   
pF1KSD PQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
              910       920       930       940       950   

>>CCDS45482.1 CYLD gene_id:1540|Hs108|chr16               (956 aa)
 initn: 4452 init1: 4452 opt: 6470  Z-score: 6250.3  bits: 1167.9 E(32554):    0
Smith-Waterman score: 6470; 99.7% identity (99.7% similar) in 956 aa overlap (1-953:1-956)

               10        20        30        40        50        60
pF1KSD MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHIN
              250       260       270       280       290       300

                 310       320       330       340       350       
pF1KSD DIIP---ESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNG
       ::::   :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DIIPALSESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNG
              310       320       330       340       350       360

       360       370       380       390       400       410       
pF1KSD SSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHSLP
              370       380       390       400       410       420

       420       430       440       450       460       470       
pF1KSD FSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEVKE
              430       440       450       460       470       480

       480       490       500       510       520       530       
pF1KSD NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCR
              490       500       510       520       530       540

       540       550       560       570       580       590       
pF1KSD PDSRFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PDSRFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNS
              550       560       570       580       590       600

       600       610       620       630       640       650       
pF1KSD CYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIM
              610       620       630       640       650       660

       660       670       680       690       700       710       
pF1KSD KLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFME
              670       680       690       700       710       720

       720       730       740       750       760       770       
pF1KSD KNEKVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KNEKVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDL
              730       740       750       760       770       780

       780       790       800       810       820       830       
pF1KSD LEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSL
              790       800       810       820       830       840

       840       850       860       870       880       890       
pF1KSD PKDLPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PKDLPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNG
              850       860       870       880       890       900

       900       910       920       930       940       950   
pF1KSD FNIPQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FNIPQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
              910       920       930       940       950      




953 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:47:01 2016 done: Thu Nov  3 18:47:01 2016
 Total Scan time:  4.420 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com