Result of FASTA (ccds) for pF1KSDA0679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0679, 916 aa
  1>>>pF1KSDA0679 916 - 916 aa - 916 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7873+/-0.000916; mu= 15.4802+/- 0.056
 mean_var=106.1105+/-21.302, 0's: 0 Z-trim(109.1): 13  B-trim: 110 in 1/49
 Lambda= 0.124507
 statistics sampled from 10653 (10659) to 10653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.327), width:  16
 Scan time:  4.660

The best scores are:                                      opt bits E(32554)
CCDS7520.1 MGEA5 gene_id:10724|Hs108|chr10         ( 916) 6144 1114.6       0
CCDS44471.1 MGEA5 gene_id:10724|Hs108|chr10        ( 863) 3477 635.6 1.2e-181


>>CCDS7520.1 MGEA5 gene_id:10724|Hs108|chr10              (916 aa)
 initn: 6144 init1: 6144 opt: 6144  Z-score: 5963.2  bits: 1114.6 E(32554):    0
Smith-Waterman score: 6144; 100.0% identity (100.0% similar) in 916 aa overlap (1-916:1-916)

               10        20        30        40        50        60
pF1KSD MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD NEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
              850       860       870       880       890       900

              910      
pF1KSD KMEGFPKDVVILGRSL
       ::::::::::::::::
CCDS75 KMEGFPKDVVILGRSL
              910      

>>CCDS44471.1 MGEA5 gene_id:10724|Hs108|chr10             (863 aa)
 initn: 3477 init1: 3477 opt: 3477  Z-score: 3374.5  bits: 635.6 E(32554): 1.2e-181
Smith-Waterman score: 5687; 94.2% identity (94.2% similar) in 916 aa overlap (1-916:1-863)

               10        20        30        40        50        60
pF1KSD MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVQKESQATLEERESELSSNPAASAGASLEPPAAPAPGEDNPAGAGGAAVAGAAGGARRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLE
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS44 TELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVM---------------
              310       320       330       340                    

              370       380       390       400       410       420
pF1KSD NEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAA
                                             ::::::::::::::::::::::
CCDS44 --------------------------------------SRQVAHSGAKASVVDGTPLVAA
                                               350       360       

              430       440       450       460       470       480
pF1KSD PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PSLNATTVVTTVYQEPIMSQGAALSGEPTTLTKEEEKKQPDEEPMDMVVEKQEETDHKND
       370       380       390       400       410       420       

              490       500       510       520       530       540
pF1KSD NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVP
       430       440       450       460       470       480       

              550       560       570       580       590       600
pF1KSD GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKD
       490       500       510       520       530       540       

              610       620       630       640       650       660
pF1KSD SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
       550       560       570       580       590       600       

              670       680       690       700       710       720
pF1KSD LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPY
       610       620       630       640       650       660       

              730       740       750       760       770       780
pF1KSD FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYA
       670       680       690       700       710       720       

              790       800       810       820       830       840
pF1KSD LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFP
       730       740       750       760       770       780       

              850       860       870       880       890       900
pF1KSD SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIA
       790       800       810       820       830       840       

              910      
pF1KSD KMEGFPKDVVILGRSL
       ::::::::::::::::
CCDS44 KMEGFPKDVVILGRSL
       850       860   




916 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:38:54 2016 done: Thu Nov  3 18:38:54 2016
 Total Scan time:  4.660 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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