GENSCAN 1.0	Date run:  3-Nov-116	Time: 18:25:37

Sequence gi568815586f:4174041_4400006 : 225966 bp : 43.85% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +  13810  13849   40                              -1.76
 1.01 Init +  27753  27861  109  2  1   94  115    64 0.916  10.16
 1.02 Intr +  41840  41952  113  0  2   63   30    99 0.040   1.70
 1.03 Intr +  42413  42497   85  1  1   87   87    14 0.043   0.59
 1.04 Intr +  46052  46180  129  0  0   63   52    56 0.016   0.17
 1.05 Term +  49394  49464   71  0  2   90   47    78 0.037   2.00
 1.06 PlyA +  50190  50195    6                               1.05

 2.00 Prom +  54181  54220   40                              -3.96
 2.01 Init +  54283  54355   73  0  1   85  101    82 0.670  10.43
 2.02 Term +  79724  79788   65  0  2  102   44    79 0.586   2.95
 2.03 PlyA +  83105  83110    6                               1.05

 3.00 Prom +  89051  89090   40                              -0.86
 3.01 Init +  95157  95209   53  2  2   85    5   118 0.565   1.83
 3.02 Intr +  98252  98334   83  2  2  119   85     4 0.783   2.48
 3.03 Intr +  98806  98965  160  2  1   73  -63   176 0.701   0.05
 3.04 Intr +  99109  99213  105  1  0   80   59    83 0.770   3.93
 3.05 Intr +  99961 100195  235  1  1   37   92   457 0.839  38.69
 3.06 Intr + 101965 102180  216  0  0   98   55   222 0.999  18.60
 3.07 Intr + 104720 104879  160  1  1  111  111   289 0.999  33.06
 3.08 Intr + 105703 105784   82  2  1   82   66    25 0.534  -1.60
 3.09 Intr + 110171 110283  113  2  2   50   93    65 0.317   3.22
 3.10 Intr + 114802 114950  149  2  2  137   66   187 0.864  21.35
 3.11 Intr + 116191 116409  219  0  0   50   76    81 0.639   1.60
 3.12 Term + 125820 125969  150  2  0   81   55   278 0.909  21.71
 3.13 PlyA + 126146 126151    6                               1.05

 4.03 PlyA - 126616 126611    6                               1.05
 4.02 Term - 150713 150332  382  1  1   28   40   838 0.981  67.31
 4.01 Init - 153863 153859    5  2  2   76   55     0 0.203  -5.03
 4.00 Prom - 157953 157914   40                              -1.06

 5.00 Prom + 162720 162759   40                              -4.66
 5.01 Init + 169606 170271  666  0  0   66   41   305 0.111  18.83
 5.02 Term + 170980 171912  933  0  0   12   47   280 0.120   8.43
 5.03 PlyA + 171960 171965    6                              -0.45

 6.00 Prom + 172243 172282   40                              -3.26
 6.01 Init + 175782 175856   75  2  0   71   96    52 0.619   5.39
 6.02 Intr + 177227 177337  111  1  0   40   91   105 0.814   6.58
 6.03 Intr + 178220 178423  204  1  0  133   62    22 0.809   3.50
 6.04 Term + 180398 180415   18  1  0   99   47    -9 0.101  -5.58
 6.05 PlyA + 180519 180524    6                               1.05

 7.03 PlyA - 180549 180544    6                               1.05
 7.02 Term - 181833 181707  127  2  1  112   47   114 0.981   7.46
 7.01 Init - 193627 193566   62  1  2   61  113    30 0.287   3.52
 7.00 Prom - 193851 193812   40                              -7.06

 8.04 PlyA - 194359 194354    6                               1.05
 8.03 Term - 196743 196303  441  0  0  109   46   584 0.998  51.56
 8.02 Intr - 198657 198554  104  1  2  121   70    36 0.945   4.99
 8.01 Init - 205542 205332  211  0  1   79   79   180 0.736  13.17

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  52381  52256  126  2  0   74   72    65 0.816   4.15


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_1|168_aa
MSLRRSLSGLSPWGHILLGFRFPGHQVSFPPTDNLQAHICAELVDPQSDQPVNLQSCSPS
SATESLNADIDDDLPIADGISILTQDNLRKGWISQDKPSYAAARDSQSLEKSLQYNSLVL
VMLCREKKRLCLLDKREMRKNSYPHASALEGKMEEQAANNEKAFREHG

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_1|507_bp
atgagccttcgaaggagcctcagtggtctctcaccctggggccacatcctgctaggcttc
aggttccctggtcaccaagtctccttcccccccaccgacaacctgcaagcccacatctgt
gcagagcttgtggatcctcagtcagatcaaccagtcaatctccaaagctgctcaccatct
agtgccactgagagccttaatgcagatatagatgatgacctgcctatagctgatggaatc
agcattctaacccaggataatctgagaaaaggctggataagtcaggataagccaagctat
gctgcagccagggattctcaatccttggaaaagtctcttcagtacaatagccttgtgtta
gtgatgctttgcagggaaaagaagcggctctgccttctggacaagagagaaatgaggaag
aacagctacccccacgcctcagccctagagggcaaaatggaagagcaggcagcaaataat
gagaaagccttcagagaacatggctga

>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_2|45_aa
MSGSSLKLSPEAVLVPNFLHGLQNDCKAVEDGDLKMLILFLGPLN

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_2|138_bp
atgagtggaagcagcctgaagctctcaccagaagcggtgttggtgccaaacttcttgcac
ggcctgcagaacgactgtaaggctgttgaagatggagacctcaagatgctcattctcttt
cttggaccacttaattga

>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_3|574_aa
MARGGGRGGRRVAALAPGEPSVRLTQPAPHPALLALRAPARAPSLESCIGVATLSADTSG
GLSADAGARKRVFPAWPLAAGEPLGALPPACGGPRRCTAGGQKGRCSGPFNRGFRNSFEV
IRNTDFRDMTFISGPGKAGGRGAAGLAMELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTI
EERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPT
PKSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAA
VTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATVAMAETLEPYSSKGEMSGVHVLT
IRNLRHCAFTRIILSESSEQHYNVGIAVVIICRSENENSERSDFKFAMYPPSMIATGSVG
AAICGLQQDEEVSSLTCDALTELLAKITNTDVLREMAQGDADGANPGSSSEIVRRYGFKM
RAPNIRFLNEDSRTQTENLPPVQHEECFSNPPEENRGRDLTFIEMDCLKACQEQIEAVLL
NSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_3|1725_bp
atggcgaggggcggggggcggggagggaggcgggtcgcggcgctggctccgggggaacct
agtgtacggctcacccagcccgcgccccaccccgccttgctggctctccgcgcccctgcc
cgggccccctctctcgaaagctgcatcggtgtggccacgctcagcgcagacacctcgggc
ggcttgtcagcagatgcaggggcgaggaagcgggtttttcctgcgtggccgctggccgcg
ggggaaccgctgggagccctgcccccggcctgcggcggccctagacgctgcaccgcgggg
gggcagaagggacgttgttctggtccctttaatcggggctttcgaaacagcttcgaagtt
atcaggaacacagacttcagggacatgacctttatctctgggccggggaaagcaggaggg
agaggggccgccgggctggccatggagctgctgtgccacgaggtggacccggtccgcagg
gccgtgcgggaccgcaacctgctccgagacgaccgcgtcctgcagaacctgctcaccatc
gaggagcgctaccttccgcagtgctcctacttcaagtgcgtgcagaaggacatccaaccc
tacatgcgcagaatggtggccacctggatgctggaggtctgtgaggaacagaagtgcgaa
gaagaggtcttccctctggccatgaattacctggaccgtttcttggctggggtcccgact
ccgaagtcccatctgcaactcctgggtgctgtctgcatgttcctggcctccaaactcaaa
gagaccagcccgctgaccgcggagaagctgtgcatttacaccgacaactccatcaagcct
caggagctgctggagtgggaactggtggtgctggggaagttgaagtggaacctggcagct
gtcactcctcatgacttcattgagcacatcttgcgcaagctgccccagcagcgggagaag
ctgtctctgatccgcaagcatgctcagaccttcattgctctgtgtgccaccgtggccatg
gcagagaccctggaaccttactcatccaagggagagatgtcaggagttcatgttttgaca
atcagaaaccttaggcactgtgcttttacaaggattattttaagtgaatcctcagaacag
cactacaacgtgggtattgctgttgtcattatttgcagatcagaaaatgaaaactcagag
aggtcagactttaagtttgccatgtacccaccgtcgatgatcgcaactggaagtgtggga
gcagccatctgtgggctccagcaggatgaggaagtgagctcgctcacttgtgatgccctg
actgagctgctggctaagatcaccaacacagacgtgctcagagaaatggcgcagggagat
gctgacggagcaaatccggggtcctcctctgagatagttcgtagatatggttttaaaatg
cgggctccaaacatacgctttttaaacgaggactccagaacacagactgaaaacctccct
ccagtgcagcatgaagaatgcttttctaatcctccagaggaaaatcgtggacgggactta
acgtttatagaaatggattgtctcaaagcttgccaggagcagattgaggcggtgctcctc
aatagcctgcagcagtaccgtcaggaccaacgtgacggatccaagtcggaggatgaactg
gaccaagccagcacccctacagacgtgcgggatatcgacctgtga

>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_4|128_aa
MRLGPAAGRDVSCEQLTQLYSACQRPQVNPGLRRKQNSLLKRLRKAKKEAPPMEKPEVVK
THLRDMIILPKMVGSMVGVYNGKTFNQVEIKPEMISHYLGEFSITYKLVKHCRPGIGATH
SSRFIPLK

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_4|387_bp
atgagacttggaccagctgcgggacgggacgtgtcctgcgagcagctgacgcagctgtac
agtgcgtgccagcggccgcaagtgaacccgggcctgcggcggaaacagaactcgctgctg
aagcgcctgcgcaaggccaagaaggaggcaccgcccatggagaagccggaagtggtgaag
acgcacctgcgggacatgatcatcctgcccaagatggtgggcagcatggtgggcgtctac
aacggcaagaccttcaaccaggtggagatcaagccggagatgatcagtcactacctgggc
gagttctccatcacctataagctggtgaagcactgccggcccggcatcggggccacccac
tcctcccgcttcatccccctcaagtag

>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_5|532_aa
MKAEIKMFFETNENKETTYQNLWDTFKAVCRGKFIALNAHRRKQERSKVGTLTSQLKELE
KQEQTNSKASRRQEITKIRAELEETETQKTLPKINESRSWFFEKINKIDRPLARPIKKRE
KNQMEAIKNDKGDITTDPTEIRTTIREYYKHLYTNKLESLEEMDKFLDTYTLPRLKQEEV
ESLIRPVTGSEIEAIINSLPTKKSPGPDGFTAEFFQRYKEELRIKYLGIQLTRDMKDLFK
EHYKPLLNEIKEDTNKWKNIPCSWIGRINIMKMAILPKVIYRFNAIPFELPMTFFTDLEK
TTLKFIWNQKRAHIAKSILSQKNKAGGITLPDFKLCYKATVTKTAWYWYQNRDIDQWNRT
EPSEIIPHIYNYLNFDKPDKNKKWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSR
WSKDLHVRPKTIKTLEENLGNTIQDIGMGKDFMTKTPKAMATKAKVDEWDLIKLKSFCTA
KETTIRVNRQPTEWEKIFPIYSSDKGLISRIYKELKQICKKKTTPSTSGQRI

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_5|1599_bp
atgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagagacaacataccag
aatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgctcac
aggagaaagcaggaaagatctaaagttggcaccctaacatcacaattgaaagaactagag
aagcaagagcaaacaaattcaaaagctagcagaaggcaagaaataactaagatcagagca
gaactggaggagacagagacacaaaaaacccttccaaaaatcaatgaatccaggagctgg
ttttttgaaaagatcaacaaaattgatagaccgctagcaagaccaataaagaaaagagag
aagaatcaaatggaagcaataaaaaatgataaaggggatatcaccacagatcccacagaa
atacgaactaccatcagagaatactataaacacctctacacaaataaactagaaagtcta
gaagaaatggataaattcctcgacacctacaccctcccaagactaaaacaggaagaagtt
gaatctctgattagaccagtaacaggctctgaaattgaggcaataattaatagcttacca
accaaaaaaagtccaggaccagacggattcacagccgaattcttccagaggtacaaggag
gagctgaggataaaatacctaggaatccaacttacaagggatatgaaggacctcttcaag
gagcactataaaccactgctcaatgaaataaaagaggacacaaacaaatggaagaacatt
ccatgctcatggataggaagaatcaatatcatgaaaatggccatactgcccaaggtaatt
tatagattcaatgccatccccttcgagctaccaatgactttcttcacagacttggaaaaa
actactttaaagttcatatggaaccaaaaaagagcccacattgccaagtcaatcctaagc
caaaagaacaaagctggaggcatcacgctacctgacttcaaactatgctacaaggctaca
gtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaaca
gagccctcagaaataataccacacatctacaactatctgaactttgacaaacctgacaaa
aacaagaaatggggaaaggattccctattcaacaaatggtgctgggaaaactggctagcc
atatgtagaaagctgaaactggatcccttccttacaccttatacaaaaattaattcaaga
tggagtaaagacttacatgttagacctaaaaccataaaaaccctagaagaaaacctaggc
aataccattcaggacataggcatgggcaaggacttcatgactaaaacaccaaaagcaatg
gcaacaaaagccaaagttgacgaatgggatctaattaaactaaagagcttctgcacagca
aaagaaactaccatcagagtgaacaggcaacctacagaatgggagaaaatttttccaatc
tactcatctgacaaagggcttatatccagaatctacaaagaactcaaacaaatttgcaag
aaaaaaacaaccccatcaacaagtgggcaaaggatatga

>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_6|135_aa
MHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAREECPVFTPPGGETL
DQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSG
IPGLAASVLVRQPLQ

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_6|408_bp
atgcatggaattttggagagaagcaaattttgcaaagatatgacggtaaagtatgactca
agacttcgggaaaggaaatacggggttgtagaaggcaaagcgctaagtgagctgagggcc
atggccaaagcagccagggaagagtgccctgtgtttacaccgcccggaggagagacgctg
gaccaggtgaaaatgcgtggaatagacttttttgaatttctttgtcaactaatcctgaaa
gaagcggatcaaaaagaacagttttcccaaggatctccaagcaactgtctggaaacttct
ttggcagagatatttcctttaggaaaaaatcacagctctaaagttaattcagacagcggt
attccaggattagcagccagtgtcttagttaggcagccactgcagtga

>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_7|62_aa
MSIHYRSFAKDWVAHARGKIRAADLTSFSADTIESSLPILDKAAFLPPVSIPLTLTYFAQ
QH

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_7|189_bp
atgagcattcactacaggtccttcgccaaagactgggtagcacatgcacgaggtaagata
cgagcagcagatcttacatccttcagtgctgacaccatcgagtcctccctgcccatcctg
gataaagcagcattcctcccaccagtctccatcccccttactctgacctattttgctcaa
cagcactga

>gi568815586f:4174041_4400006|GENSCAN_predicted_peptide_8|251_aa
MLGARLRLWVCALCSVCSMSVLRAYPNASPLLGSSWGGLIHLYTATARNSYHLQIHKNGH
VDGAPHQTIYSALMIRSEDAGFVVITGVMSRRYLCMDFRGNIFGSHYFDPENCRFQHQTL
ENGYDVYHSPQYHFLVSLGRAKRAFLPGMNPPPYSQFLSRRNEIPLIHFNTPIPRRHTRS
AEDDSERDPLNVLKPRARMTPAPASCSQELPSAEDNSPMASDPLGVVRGGRVNTHAGGTG
PEGCRPFAKFI

>gi568815586f:4174041_4400006|GENSCAN_predicted_CDS_8|756_bp
atgttgggggcccgcctcaggctctgggtctgtgccttgtgcagcgtctgcagcatgagc
gtcctcagagcctatcccaatgcctccccactgctcggctccagctggggtggcctgatc
cacctgtacacagccacagccaggaacagctaccacctgcagatccacaagaatggccat
gtggatggcgcaccccatcagaccatctacagtgccctgatgatcagatcagaggatgct
ggctttgtggtgattacaggtgtgatgagcagaagatacctctgcatggatttcagaggc
aacatttttggatcacactatttcgacccggagaactgcaggttccaacaccagacgctg
gaaaacgggtacgacgtctaccactctcctcagtatcacttcctggtcagtctgggccgg
gcgaagagagccttcctgccaggcatgaacccacccccgtactcccagttcctgtcccgg
aggaacgagatccccctaattcacttcaacacccccataccacggcggcacacccggagc
gccgaggacgactcggagcgggaccccctgaacgtgctgaagccccgggcccggatgacc
ccggccccggcctcctgttcacaggagctcccgagcgccgaggacaacagcccgatggcc
agtgacccattaggggtggtcaggggcggtcgagtgaacacgcacgctgggggaacgggc
ccggaaggctgccgccccttcgccaagttcatctag