GENSCAN 1.0	Date run:  3-Nov-116	Time: 18:16:57

Sequence gi568815580r:48821375_49050424 : 229050 bp : 50.79% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  12707  12727   21  1  0  138   64    16 0.082   1.94
 1.02 Intr +  13399  13492   94  0  1   35   73    64 0.081  -0.86
 1.03 Intr +  15130  15304  175  2  1   64  110    32 0.573   2.00
 1.04 Intr +  21944  22037   94  2  1  131   55    33 0.598   4.27
 1.05 Intr +  22298  22373   76  1  1   88   67    66 0.824   3.59
 1.06 Intr +  27368  27710  343  0  1   93   80    83 0.277   2.49
 1.07 Intr +  33583  33676   94  1  1   84   30    27 0.115  -3.53
 1.08 Intr +  36214  36267   54  0  0  125   99    17 0.548   5.68
 1.09 Term +  37970  38185  216  1  0   90   48   329 0.665  26.24
 1.10 PlyA +  41818  41823    6                               1.05

 2.19 PlyA -  43131  43126    6                               1.05
 2.18 Term -  53263  53123  141  1  0  113   49    67 0.444   3.23
 2.17 Intr -  64388  64354   35  0  2  136  110   -24 0.088   2.54
 2.16 Intr -  66182  66096   87  0  0   92   60    40 0.071   1.54
 2.15 Intr -  67805  67718   88  2  1   85  100   -12 0.042  -0.76
 2.14 Intr -  72914  72801  114  2  0   30   88    63 0.006   1.14
 2.13 Intr -  76086  75957  130  2  1   80   75    38 0.022   2.40
 2.12 Intr -  83712  83558  155  0  2   84  100    14 0.008   1.07
 2.11 Intr -  87801  87682  120  0  0   97    4    72 0.018   0.39
 2.10 Intr -  89757  89630  128  1  2   15  101    84 0.325   2.80
 2.09 Intr -  93536  93489   48  0  0   94  105    40 0.941   4.95
 2.08 Intr -  96254  96220   35  1  2   55   76    64 0.031  -0.23
 2.07 Intr - 100536 100002  535  1  1  119   25   833 0.026  72.08
 2.06 Intr - 119002 118939   64  1  1  115   -8    74 0.001  -1.21
 2.05 Intr - 120939 120856   84  0  0   40   62    78 0.002   0.42
 2.04 Intr - 121181 121107   75  2  0   73  110    26 0.003   3.01
 2.03 Intr - 128176 128094   83  2  2   67   59    80 0.118   2.36
 2.02 Intr - 129087 128438  650  2  2   36   66   423 0.122  26.49
 2.01 Init - 129220 129114  107  1  2   30   -7   234 0.828   5.79
 2.00 Prom - 134208 134169   40                              -4.16

 3.00 Prom + 152497 152536   40                              -4.06
 3.01 Init + 154640 154708   69  1  0   43   80   151 0.970   8.85
 3.02 Intr + 156681 156800  120  2  0  101   39    72 0.515   4.29
 3.03 Intr + 156825 156880   56  2  2   83   38    30 0.054  -4.72
 3.04 Term + 163823 163940  118  2  1  110   48    95 0.719   5.71
 3.05 PlyA + 164289 164294    6                               1.05

 4.03 PlyA - 166717 166712    6                               1.05
 4.02 Term - 172138 172037  102  1  0  130   41   108 0.985   8.58
 4.01 Init - 172749 172705   45  0  0   82   98    30 0.807   4.08
 4.00 Prom - 172815 172776   40                              -4.86

 5.03 PlyA - 172869 172864    6                               1.05
 5.02 Term - 174419 174279  141  2  0   62   42   152 0.562   5.93
 5.01 Init - 193171 193025  147  1  0   70   92    83 0.645   5.09
 5.00 Prom - 194347 194308   40                              -6.66

 6.11 PlyA - 194356 194351    6                               1.05
 6.10 Term - 197508 197372  137  1  2  115   43    66 0.818   2.98
 6.09 Intr - 197923 197860   64  1  1  122   89    14 0.981   3.19
 6.08 Intr - 200135 200030  106  1  1  108   84    73 0.944   9.12
 6.07 Intr - 201750 201591  160  1  1   39   89    22 0.233  -3.55
 6.06 Intr - 204746 204596  151  2  1   95   41   111 0.780   6.84
 6.05 Intr - 205611 205415  197  1  2   59   45   100 0.512   1.93
 6.04 Intr - 208012 207881  132  2  0   75   32    74 0.543   1.12
 6.03 Intr - 208578 208463  116  2  2  103   72    77 0.877   7.69
 6.02 Intr - 209614 209497  118  2  1  -26   31   173 0.850  -0.28
 6.01 Init - 213436 213304  133  1  1   78   47    45 0.414  -0.30
 6.00 Prom - 213560 213521   40                              -2.46

 7.03 PlyA - 213927 213922    6                               1.05
 7.02 Term - 222830 222681  150  2  0   81   55   222 0.996  16.11
 7.01 Init - 226577 226485   93  2  0   54   52    85 0.463   0.74

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  57909  57804  106  0  1   81   94    78 0.828   8.11
S.002 Term - 100536  99998  539  1  2  119   42   849 0.969  77.81


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580r:48821375_49050424|GENSCAN_predicted_peptide_1|388_aa
MRVGKCLRSALPAHTAQGSSRDTGNVDVSPGAREQQGCSLGDYEAPVSEIPNQPHHFSPP
GPNIPPGPPGLPAPAIPLEGQGSRVGSPRRLPLVMPRALRSSRELCPVFPVTITPSCSLR
SGEGLQAQVTVYDPHQGSLESGKDAFTNDFEMTGTPGDSHQAAFLPGCCGASHSHSLTGA
PWFLPEGGYDGRAHNKSPPETIGQECIRFRTNTVWARTIALDSCPRNTFCRSRAREACLP
QPAHIPVSARDSDEWAAPPPTPGPLTPSAYRHLIEMFIGLFSAFPPPRSCISTALEQGLL
LQSQDVKEDAVLCCSMELQSTGRLLEEQLPEMMTELLASARDKMLCPSESMLTRSLLLEV
IELHANSWNPLTPPITQYYNRTIQKLTA

>gi568815580r:48821375_49050424|GENSCAN_predicted_CDS_1|1167_bp
atgagggtcggcaaatgtctgcgatctgccctgccagctcacactgcccaaggctctagc
cgagatacaggaaatgtggatgtgtcccccggagcccgagagcagcagggctgcagcctg
ggcgattatgaggcaccagtgagtgagatccccaaccaaccccatcacttcagccctcca
ggtcccaacatcccaccaggtccccctggactgccagcacctgccattcccctagagggg
caaggaagcagggtgggaagccccaggagactgccgttggtcatgcccagggccctgcgc
tccagcagggagctgtgcccagtgttcccagtgaccataactccatcctgttccctgcgg
agtggggagggcttgcaggctcaggtgaccgtatatgatccacatcagggcagtttggag
agtggaaaggatgcttttactaatgactttgagatgacagggactccaggagactcccac
caggctgcctttctccctggctgctgtggggcctcccacagccacagcctgactggagca
ccttggtttctccctgagggaggatatgatgggcgtgcccacaacaagtctccgccagag
acaataggacaggaatgcattcgcttccgaacaaacactgtgtgggctcgcacaattgcc
ttggattcttgtccaagaaacacattttgccgttcgagggcacgggaggcttgcctgccc
cagcccgcccacatccccgtcagtgccagagactctgatgagtgggctgctcctcccccg
accccagggcctctgacccccagtgcttaccgccatctgatagagatgtttattggtttg
ttttctgcatttccaccgccccggagctgcatttccaccgccctggagcagggcctgctc
ttgcaatctcaggatgtgaaggaagatgctgtcctttgctgctctatggagctgcagagt
acaggccggctgctggaggaacagctgcctgagatgatgacagagctcctggccagcgca
cgggacaagatgctgtgcccctcggagtccatgctgacccggtcgctgctcctagaggtc
atcgagctccacgctaacagctggaaccctctgacgccccccatcacgcagtactacaac
agaaccatccagaaactgacagcctga

>gi568815580r:48821375_49050424|GENSCAN_predicted_peptide_2|892_aa
MPRSAPRAAAAPARAPAAAAVACACCPNSAPDFFMVRQTTFLLASSPRMFRTKRSALVRR
LWRSRAPGGEDEEEGAGGGGGGGELRGEGATDSRAHGAGGGGPGRAGCCLGKAVRGAKGH
HHPHPPAAGAGAAGGAEADLKALTHSVLKKLKERQLELLLQAVESRGGTRTACLLLPGRL
DCRLGPGAPAGAQPAQPPSSYSLPLLLCKVFRWPDLRHSSEVKRLCCCESYGKINPELVC
CNPHHLSRLCELGVYGHCSCSLRLKIRRLHFRINKGVQREQTVQMLCLPPLKQGERIIWP
LGGFQLLILQSFTLWTLDPFRGRGDKSELGIALVIVDTDINKELPGRSSDSLKGNSQLLL
EPGDRSHWCVVAYWEEKTRVGRLYCVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKV
RSKIGCGIQLTREVDGVWVYNRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEK
AYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFISSCPCWLEVIFNSRGHGGNVD
LDGASAINLPNTKWPLEEDSAREITVPGRLVPEALPEVIPEQERMLGNNKNDRVWLPALD
NGMVVSEQWGRENVSGRGWEEEEKKEEEEEEEEEEEEEEKEGKHNQGLHSKRQGKKDPLA
ASASGLLSQQFHSGPGLALSKTKALQMTTPTLFTSTQELGSRKSWDPGLCKTLPIGLSWE
RERCLLLATNPLETLGQQTLPPIALTACGSQAAQQEESMAAPLLVKQTPGLTVRCKRCIY
PTAVALGKDQAICTWLGQRTQVVGKAGCAQWLAWHSEDLPINPGTSVCSASAQGGTMRGG
KGRWWQVGMLWLMLKHQDLQLGSPECQIEKETTEARKMWPRTQMEGAKDKAS

>gi568815580r:48821375_49050424|GENSCAN_predicted_CDS_2|2679_bp
atgccacggagcgcccctcgggccgccgccgctcctgcccgggcccctgctgctgctgct
gtcgcctgcgcctgctgccccaactcggcgcccgacttcttcatggtcaggcaaacgact
tttctcctcgcctcctcgccccgcatgttcaggaccaaacgatctgcgctcgtccggcgt
ctctggaggagccgtgcgcccggcggcgaggacgaggaggagggcgcagggggaggtgga
ggaggaggcgagctgcggggagaaggggcgacggacagccgagcgcatggggccggtggc
ggcggcccgggcagggctggatgctgcctgggcaaggcggtgcgaggtgccaaaggtcac
caccatccccacccgccagccgcgggcgccggcgcggccgggggcgccgaggcggatctg
aaggcgctcacgcactcggtgctcaagaaactgaaggagcggcagctggagctgctgctc
caggccgtggagtcccgcggcgggacgcgcaccgcgtgcctcctgctgcccggccgcctg
gactgcaggctgggcccgggggcgcccgccggcgcgcagcctgcgcagccgccctcgtcc
tactcgctccccctcctgctgtgcaaagtgttcaggtggccggatctcaggcattcctcg
gaagtcaagaggctgtgttgctgtgaatcttacgggaagatcaaccccgagctggtgtgc
tgcaacccccatcaccttagccgactctgcgaactaggggtctacgggcactgctcctgc
agtctgcggttaaaaattagacgccttcatttccggatcaacaagggggtgcagagggag
cagactgtccagatgctgtgccttcctccgctgaaacagggggaacgaattatctggccc
ctggggggctttcagctcctcatcctgcagtcctttacgctctggacactggatccgttc
cgtggacggggagacaagagcgagctggggattgctttggtaattgtagacacagatatt
aataaggagctgccaggaagaagcagtgactctctgaagggcaattcccaacttcttctg
gagcctggggatcggtcacactggtgcgtggtggcatactgggaggagaagacgagagtg
gggaggctctactgtgtccaggagccctctctggatatcttctatgatctacctcagggg
aatggcttttgcctcggacagctcaattcggacaacaagagtcagctggtgcagaaggtg
cggagcaaaatcggctgcggcatccagctgacgcgggaggtggatggtgtgtgggtgtac
aaccgcagcagttaccccatcttcatcaagtccgccacactggacaacccggactccagg
acgctgttggtacacaaggtgttccccggtttctccatcaaggctttcgactacgagaag
gcgtacagcctgcagcggcccaatgaccacgagtttatgcagcagccgtggacgggcttt
accgtgcagatcagctttgtgaagggctggggccagtgctacacccgccagttcatcagc
agctgcccgtgctggctagaggtcatcttcaacagccgcgggcacggaggtaacgtggac
ctggacggtgcctctgcaattaatctacccaacacaaagtggccgctggaggaggactct
gccagggaaattacagtgcccgggagacttgtcccagaggccctgcccgaggtaattcca
gagcaggagcgcatgctgggaaataacaagaatgacagagtctggctgccagccttagat
aatggaatggtagtcagtgagcaatggggtagagagaatgtcagcgggagggggtgggag
gaggaggaaaaaaaggaggaagaagaggaggaagaagaggaggaagaggaagaggagaaa
gagggaaagcataaccaagggcttcacagcaagagacaagggaagaaggacccactggca
gcttcagcctctggtctgttgtctcagcaattccactctggccctggacttgcacttagc
aaaactaaagccctgcaaatgactacacccaccctgttcacaagcacccaggagctgggc
agcaggaagtcttgggatcctggattgtgcaagaccctgcccatcggattaagttgggag
agggagcggtgcctcctccttgctaccaaccccctagaaacactgggccagcagacgctg
cctccaattgctttaactgcctgcggcagtcaggcagctcaacaggaggaaagcatggcg
gcccctttgctagtgaagcaaacaccaggcctgactgtcagatgcaagaggtgcatttat
ccgacggctgtggccttgggaaaagaccaagccatttgtacctggctaggtcagagaacc
caggttgtggggaaagcaggctgtgcccaatggctggcttggcattccgaggacttgccc
atcaatccagggacttctgtgtgctctgccagtgctcagggagggacgatgagaggtggc
aagggaaggtggtggcaggtgggaatgctttggctcatgctgaagcatcaggaccttcag
cttgggagccctgagtgccagatagagaaagaaacaactgaagccaggaagatgtggccc
aggacacagatggaaggtgccaaagacaaagctagctga

>gi568815580r:48821375_49050424|GENSCAN_predicted_peptide_3|120_aa
MPSSRRRAPRARAASRGAARVAQMVLRGSVFLSQWTRQIHRCVGDTECERQGQQQGLGGR
GDPCCDLGHIGFSQPQAKSSPVASGELRNLLDMELGTAKSPPPAQMEEKPGAPIKECLSL

>gi568815580r:48821375_49050424|GENSCAN_predicted_CDS_3|363_bp
atgccgtcttcccggcgccgcgctcccagagctcgcgccgcctcccggggcgccgcgcgg
gtggcgcagatggtactgagaggatctgtcttcctctctcagtggacacgacagattcat
cgctgtgtgggggacaccgagtgtgagcgtcagggtcagcagcagggccttggaggcaga
ggggacccttgctgtgacctgggccatattggcttctctcaaccccaggccaagtcctcc
cctgttgcttcaggagagctgaggaacttgttggatatggagctgggcacagcaaaatct
ccacccccagctcagatggaggagaaacctggtgctccaataaaggagtgtttatccctt
taa

>gi568815580r:48821375_49050424|GENSCAN_predicted_peptide_4|48_aa
MGERGHRRPFQVKEKGCEFPMVTATEKVVALKAQAETVFCTVKHQDPF

>gi568815580r:48821375_49050424|GENSCAN_predicted_CDS_4|147_bp
atgggggagcggggccacaggcgacccttccaagtcaaggagaagggctgtgaattcccc
atggtcacggcaactgaaaaagtcgttgccttgaaagctcaagcagaaactgtgttctgc
actgtgaaacaccaagacccgttctaa

>gi568815580r:48821375_49050424|GENSCAN_predicted_peptide_5|95_aa
MDVARWPNLLPQSWDPLEAPRALGILHHQCKGKVPPTPSFKAPQRDGLWDTKLLNNQEMK
DGSITNQTIAWDSEDVLSAVLNAEEPMWMRGLRLG

>gi568815580r:48821375_49050424|GENSCAN_predicted_CDS_5|288_bp
atggacgttgcccggtggcccaacctcctgccacagagctgggacccactggaggctccc
agagccctcgggatccttcatcatcagtgtaagggcaaggttcccccaacccccagcttc
aaggctccacaaagagatggtttgtgggacacgaagctactgaataatcaagaaatgaaa
gatgggtccatcacaaaccagacaattgcttgggactccgaggacgtcctgtcggcagtt
ctcaatgcagaggaacccatgtggatgcgtggcttgcgcctaggctga

>gi568815580r:48821375_49050424|GENSCAN_predicted_peptide_6|437_aa
MEYYAAIKKDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIGAFIIIIIIIIIIIII
IIMLFAFSLSFLHECSVEFSRSCIHTGYPNLHPLTRKPRKTVTLLRLYFLGPGAPEGPWG
NAGLRGNVAAALPNTRHPAMQLETSRETLPTMTPEKPRATTLPACPRQTQQLSLQPTQLV
RCPSLGPQCPGRDPDSTMLGSPSGQRHAMRFTQEPHRHVGICKVPRNIRTGEEAVLDQPS
SSILPSRAPKAQPQSCHSRYLPSAQDKQNTSISDEELALPVPARTGCGTSQGLHFLIYKM
EVIIDVHAKLLRRLSPCCKVAPSEQSLMHPWSMPHRPELSRWCCTSIRGYMSPPPFSPNT
GRQGSPVREEGDGTARPGTLVPQSPGLEGPLAGRGHALSRPHSVSARFNRILLRLLLWRL
DVNMRGEDLVALSVVEA

>gi568815580r:48821375_49050424|GENSCAN_predicted_CDS_6|1314_bp
atggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatg
aagctagaaaccatcattctgagcaaactatcccaaggacagaaaaccaaacaccacatg
ttctcactcataggtgctttcatcatcatcatcatcatcatcatcatcatcatcatcatc
atcatcatgttatttgccttttctctttcattccttcatgaatgttcggtggagttttcc
agaagctgcatccacactggctaccccaacctgcaccctctgactcgcaagcccaggaag
actgtgactttgcttcggctctatttcctgggtcctggtgcaccggaagggccgtgggga
aatgcaggactgagaggcaacgtggctgctgccctgcccaacactcggcatcctgccatg
cagctagagaccagtcgtgagactctgcccacaatgaccccggagaagccaagggccact
actttgcctgcatgcccacgccagactcagcagctgtccttgcagccaacccagctggtc
agatgcccctccctgggcccacagtgtcccggtcgggaccctgactccacgatgttagga
agcccctcggggcagcgtcatgccatgcgcttcacacaggagccccatcgccatgttggc
atctgtaaggtccccaggaacatccggacaggagaggaagctgtcctggatcagcccagc
tccagtatccttccttcccgggctcccaaagctcaaccacagtcctgccattcccgttac
ctgccaagcgcacaggacaaacaaaacaccagcatcagcgatgaggagctggcccttcct
gtgccagcacgtactggctgtgggacctctcagggcctccatttccttatctataaaatg
gaggtaataattgatgttcacgcaaagctgttacgaagattaagcccgtgctgcaaggtg
gcgccctcagagcagagcctgatgcatccatggtccatgcctcacaggccggagctctct
cgttggtgctgcacctccatccggggctacatgtcccctccacctttctcacccaacact
ggacggcagggaagccctgtgagggaagagggggatggcaccgccaggcctgggacactg
gtgccccagagcccaggcctggaggggccccttgcaggacgaggacacgccctctctaga
cctcactctgtttcggcgcggtttaatagaatcctcctcaggctgctgctgtggaggtta
gatgtgaacatgcgtggagaggacttggtggcgctctcggtagtggaggcttag

>gi568815580r:48821375_49050424|GENSCAN_predicted_peptide_7|80_aa
MGLALASAGHLVTDQDAVGASDGMMYGERGSKFPELKFKYVEEEQPEEFFIPYVWSLVYN
SAVGLYWNPQDIQLFTMDSD

>gi568815580r:48821375_49050424|GENSCAN_predicted_CDS_7|243_bp
atggggttggcactggcctcagcgggacatttggtgactgaccaggatgccgtgggagct
tcagacggcatgatgtatggggagcgcgggtcgaaatttccagaattgaaattcaaatat
gtggaagaggagcagcccgaggagttttttatcccctatgtctggtctcttgtctacaac
tcagcagtcggcctgtactggaatccacaggacatccagctgttcaccatggattccgac
tga