GENSCAN 1.0	Date run:  3-Nov-116	Time: 18:08:24

Sequence gi568815597r:47151139_47410319 : 259181 bp : 44.56% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1891   1979   89  0  2   68   98    45 0.284   3.61
 1.02 Intr +   7612   7736  125  1  2   85   54    36 0.092   0.13
 1.03 Intr +  18101  18348  248  0  2   46   41   179 0.136   6.18
 1.04 Term +  19045  19875  831  0  0   20   41   229 0.887   4.42
 1.05 PlyA +  20915  20920    6                               1.05

 2.06 PlyA -  21396  21391    6                               1.05
 2.05 Term -  21898  21752  147  1  0   75   47   120 0.303   4.50
 2.04 Intr -  32905  32854   52  0  1  115   68   100 0.243   9.61
 2.03 Intr -  33959  33864   96  1  0   65   94    65 0.899   3.92
 2.02 Intr -  36289  36181  109  2  1   73   78   165 0.862  13.34
 2.01 Init -  38794  38728   67  1  1   95   65   116 0.979   9.27
 2.00 Prom -  44930  44891   40                              -5.96

 3.03 PlyA -  46177  46172    6                               1.05
 3.02 Term -  48244  48145  100  0  1   78   41    83 0.738   0.20
 3.01 Init -  49032  48851  182  0  2   87   93   101 0.809   9.16
 3.00 Prom -  50984  50945   40                              -6.06

 4.00 Prom +  51917  51956   40                              -5.06
 4.01 Init +  58690  58721   32  0  2   83   59    15 0.228  -2.67
 4.02 Intr +  59554  59731  178  1  1  113   89    26 0.559   5.12
 4.03 Intr +  63673  63801  129  0  0   93   82    52 0.877   5.99
 4.04 Term +  65417  65506   90  1  0    8   42   149 0.689   0.02
 4.05 PlyA +  65544  65549    6                               1.05

 5.06 PlyA -  67267  67262    6                              -3.24
 5.05 Term -  69036  68582  455  1  2  109   45   645 0.989  57.62
 5.04 Intr -  72960  72866   95  2  2  103  101   110 0.979  13.41
 5.03 Intr -  74751  74305  447  2  0  115   71   408 0.028  34.26
 5.02 Intr -  80042  79909  134  2  2   63   65    66 0.003   1.24
 5.01 Init -  81277  81173  105  1  0   87   92    94 0.003   8.51
 5.00 Prom -  94790  94751   40                              -5.36

 6.14 PlyA -  97458  97453    6                               1.05
 6.13 Term - 100784  99998  787  1  1   97   37   344 0.605  23.00
 6.12 Intr - 109401 109151  251  0  2   66   93    58 0.554   0.34
 6.11 Intr - 111975 111765  211  2  1   71   91    94 0.597   6.92
 6.10 Intr - 118728 118497  232  1  1   73   80   209 0.862  15.43
 6.09 Intr - 121055 120938  118  2  1   60   91    96 0.553   7.14
 6.08 Intr - 130071 129808  264  0  0   88   69    94 0.962   5.21
 6.07 Intr - 131321 131219  103  1  1   98   81    44 0.795   4.88
 6.06 Intr - 136522 136413  110  1  2   70   83    75 0.969   4.28
 6.05 Intr - 138447 138297  151  2  1   71  106    61 0.960   6.36
 6.04 Intr - 149014 148767  248  1  2   47  106    17 0.098  -4.34
 6.03 Intr - 150610 150423  188  2  2   96   86    89 0.807   8.91
 6.02 Intr - 151208 151096  113  1  2   82   85    71 0.781   6.22
 6.01 Init - 159181 159138   44  1  2   97   80    10 0.307   1.02
 6.00 Prom - 159887 159848   40                              -8.56

 7.00 Prom + 161471 161510   40                              -2.36
 7.01 Init + 182808 182978  171  2  0    6   78   342 0.966  22.44
 7.02 Intr + 217331 217477  147  1  0   94   86   129 0.991  13.73
 7.03 Intr + 221817 221969  153  2  0  108   80    90 0.993  10.47
 7.04 Intr + 223771 223847   77  0  2  100   65    12 0.987  -1.59
 7.05 Intr + 224059 224155   97  1  1   68  100    98 0.986   9.01
 7.06 Term + 225566 225607   42  1  0  130   31    75 0.993   3.16
 7.07 PlyA + 226487 226492    6                               1.05

 8.02 PlyA - 226548 226543    6                               1.05
 8.01 Term - 230005 229896  110  2  2  118   48    68 0.528   4.47

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  80232  81079  848  1  2   94   53   330 0.884  23.14
S.002 Term + 183051 183161  111  2  0   57   37    91 0.925  -0.54


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_1|430_aa
MVVKRCRICCQDGQIGAAPVCSSQKDQRRRIRKSYFKFHVEQKRPSIAKTILSKKNKAGD
ITLSYCKLYYKEIQTTIREYYKHPYENKLENLEEMGKFLDTYTHPRLNHEEAESLNRPIT
GSEIEAIINSLPTKKSPRPDGFTAKFYQRYKEELLIGNFSKVSGYKINVRKSQAFLYTNN
RQTESQIMSELPFTIASKRIKYLGIQITRDVKDLFKGNYKPLLNEIKEDTNKWKNIPCSW
VGRINIVKMAILPKVIYRFNTIPIKLPMTFFTELEKTTLKFIWNQKTAHIAKSILSQKNK
AGGIMLPDFKLYYKAVITKTAWYWYQNRDIDQWNRTEPSEIMPHIYNHLIFDKPDKNKKW
GKDSLFNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLKENLGNTIQ
DIGMGKDFNV

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_1|1293_bp
atggttgtaaaacgctgtaggatctgctgccaagatggccaaataggagcagctccagtc
tgcagctcccagaaagaccaacgcagaagaattagaaaaagctactttaaatttcatgtg
gaacaaaaaaggcccagtatagccaagacaatcctaagcaaaaagaacaaagctggagac
atcaccctatcttactgcaagctatactacaaggaaatacaaactaccatcagagaatac
tataaacacccctatgaaaataaactagaaaatctagaagaaatgggtaaattcctggac
acatacacccacccaagactaaaccatgaagaagctgaatctctgaatagaccaataaca
ggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaagtccaagaccagat
ggattcacagccaaattctaccagaggtacaaggaggagctgctaataggcaacttcagc
aaagtctcaggatacaaaatcaatgtgcgaaaatcacaagcattcttgtacaccaataac
agacaaacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaata
aaatacctaggaatccaaattacaagggatgtgaaggacctcttcaaggggaactacaaa
ccactgctcaatgaaataaaagaggatacaaacaaatggaagaatattccatgctcatgg
gtaggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaat
accatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaag
ttcatatggaaccaaaaaacagcccacattgccaagtcaatcctaagccaaaagaataaa
gctggaggcatcatgctacctgacttcaaactatactacaaggctgtaataaccaaaaca
gcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaa
ataatgccacatatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatgg
ggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaag
ctgaaactggatcccttccttacaccttatacaaaaattaattcaagatggattaaagac
ttaaacgttagacctaaaaccataaaaaccctaaaagaaaacctaggcaataccattcag
gacataggcatgggcaaggacttcaatgtctaa

>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_2|156_aa
MSALSLLILGLLTAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEPE
PAHMILTVGNKADGVLVGTDGRYSSMAASFRSSEHENAYENVPEEEGKTSSLQNCEYYAE
ESPHQHLTNLTMLHPHLRRSASRTVNTMLKRALTST

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_2|471_bp
atgtcggccctcagcctcctcattctgggcctgctcacggcagtgccacctgccagctgt
cagcaaggcctggggaaccttcagccctggatgcagggccttatcgcggtggccgtgttc
ctggtcctcgttgcaatcgcctttgcagtcaaccacttctggtgccaggaggagccggag
cctgcacacatgatcctgaccgtcggaaacaaggcagatggagtcctggtgggaacagat
ggaaggtactcttcgatggcggccagtttcaggtccagtgagcatgagaatgcctatgag
aatgtgcccgaggaggaaggcaagacatccagcctccagaactgtgagtactatgctgaa
gagagccctcatcagcacctgaccaacctgaccatgctgcaccctcatcttagacgttca
gcctccagaactgtgaatactatgctgaagagagccctcaccagcacctga

>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_3|93_aa
MELRPEMSSGCCKQPVHTGTHRHRRIALCSLHPLTCELPLARLWSYGTLEQCLAQEDTYE
SLLTAHFPVRTILPAAVGESLPKCKTFPHRIFA

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_3|282_bp
atggagctgcgtcctgagatgtcctccgggtgctgcaaacagcctgtccacactgggact
catcgtcatcggcgcattgctctttgctcactgcacccactaacctgtgagctccctttg
gcacggctgtggagctatggtactttagaacagtgcttggcacaggaagacacctacgaa
agcctgctcactgcccacttccctgttcggaccattcttccagctgcagttggagagagc
ttgccaaaatgcaagactttcccacatcgcatctttgcctaa

>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_4|142_aa
MAVFKGSPDVGCLTSCPGCSFQSTAHSFPRLYLCPAVPATLNAIPLFAYLTNSYSSFKNQ
LLLEALLDPQPLTTGPFLILLLSPVSTDQANTTTAEIHSQLTPRLNLTILSSQGASLQQR
VTYHRNHKYGQTHPQKAEIVVG

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_4|429_bp
atggcagtattcaagggctcacctgatgtagggtgccttaccagctgcccaggctgcagc
ttccaaagcacagcccactctttcccaaggctgtacctctgtcctgctgttcctgctacc
ctgaatgccattcctctctttgcatacctgacaaattcctattcatccttcaagaaccaa
cttcttctggaagccttgcttgacccccaacccttaaccacaggtcccttcctcatactg
ctcctctcacctgtgagcacagaccaggccaacaccaccactgctgagatccacagccag
ctcaccccacggctaaatctcaccatcctatcatcccagggggcaagtcttcagcagagg
gtcacgtaccatcgaaatcacaagtacggccagacccacccccaaaaggccgaaatagtt
gtcggctga

>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_5|411_aa
MAEALIGGGRTRGSALSLRRTRPRRASAHANEAWNVFEGFVGEWEAPPGLKLSSARRGRR
LRAGSCGLRFPLHSGFIHFWMTERPPSEAARSDPQLEGRDAAEASMAPPHLVLLNGVAKE
TSRAAAAEPPVIELGARGGPGGGPAGGGGAARDLKGRDAATAEARHRVPTTELCRPPGPA
PAPAPASVTAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPM
FTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPD
KKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDL
LQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_5|1236_bp
atggccgaggcgcttatcgggggcgggcggacccgcggcagtgccttatctctgcggcgc
acacggccccggcgcgcctcggcccatgctaacgaggcctggaacgtgtttgaggggttc
gttggtgagtgggaggctcctccaggcttgaagctgagcagcgctcgccgaggccggcgc
cttcgagccggtagctgcgggcttcggttcccgctgcactccggcttcatccatttctgg
atgaccgagcggccgccgagcgaggcggctcgcagtgacccccagctagagggacgggac
gcggccgaggccagcatggcccccccgcacctggtcctgctgaacggcgtcgccaaggag
acgagccgcgcggccgcagcggagcccccagtcatcgaactgggcgcgcgcggaggcccg
gggggcggccctgccggtgggggcggcgccgcgagagacttaaagggccgcgacgcggcg
acggccgaagcgcgccatcgggtgcccaccaccgagctgtgcagacctcccgggcccgcc
ccggcccccgcgcccgcctcggttacagcggagctgcccggcgacggccgcatggtgcag
ctgagtcctcccgcgctggctgcccccgccgcccccggccgcgcgctgctctacagcctc
agccagccgctggcctctctcggcagcgggttctttggggagccggatgccttccctatg
ttcaccaccaacaatcgagtgaagaggagaccttccccctatgagatggagattactgat
ggtccccacaccaaagttgtgcggcgtatcttcaccaacagccgggagcgatggcggcag
cagaatgtgaacggggcctttgccgagctccgcaagctgatccccacacatcccccggac
aagaagctcagcaagaatgagatcctccgcctggccatgaagtatatcaacttcttggcc
aagctgctcaatgaccaggaggaggagggcacccagcgggccaagactggcaaggaccct
gtggtgggggctggtgggggtggaggtgggggagggggcggcgcgcccccagatgacctc
ctgcaagacgtgctttcccccaactccagctgcggcagctccctggatggggcagccagc
ccggacagctacacggaggagcccgcgcccaagcacacggcccgcagcctccatcctgcc
atgctgcctgccgccgatggagccggccctcggtga

>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_6|939_aa
MEPIYPFARPQMNTRNPKLVVTEKTIRLAYRHAKQNKKNSSCFLLGSLTADEDEEGVTLT
VDRFDPGREVPECLEITPTASLPGDFLIPCKVHTQELCSREMIVHSVDDFSSALKALQCH
ICSKDSLDCGKLLSLRVHITSRESLDSVEFDLHWAAVTLANNFKCTPVKPIPIIPTALAR
NLSSNLNISQVQGTYKYGVFSESGNFIIVLYSMTHKEPEFYECFPCDGKIPDFRFQLLTS
KETLHLFKNVEPPDKNPIRCELSAESQNAETEFFSKASKNFSIKRSSQKLSSGKMPIHDH
DSGVEDEDFSPRPIPSPHPISKIQPSVPELSLVLDGNFIESNPLPTPLEMVNNENPPLIN
HLEHLKPLQPQLYDEKHSPEVEAGEPSLRGIPNQLNQDKPALLRHCKTTAVEDTVQAGRQ
MELVSVEAQSSPGLHMRKGVSIAVSTGASLFWNAAGEDQEPDSQMKQDDTKISSEDMNFS
VDINNEVTSLPGSASSLKAVDIPSFEESNIAVEEEFNQPLSVSNSSLVVRKEPDVPVFFP
SGQLAESVSMCLQTGPTGGASNNSETSEEPKIEHVMQPLLHQPSDNQKIYQDLLGQVNHL
LNSSSKETEQPSTKAVIISHECTRTQNVYHTKKKTHHSRLVDKDCVLNATLKQLRSLGVK
IDSPTKVKKNAHNVDHASVLACISPEAVISGLNCMSFANVGMSGLSPNGVDLSMEANAIA
LKYLNENQLSQLSVTRSNQNNCDPFSLLHINTDRSTVGLSLISPNNMSFATKKYMKRYGL
LQSSDNSEDEEEPPDNADSKSEYLLNQNLRSIPEQLGGQKEPSKNDHEIINCSNCESVGT
NADTPVLRNITNEVLQTKAKQQLTEKPAFLVKNLKPSPAVNLRTGKAEFTQHPEKENEGD
ITIFPESLQPSETLKQMNSMNSVGTFLDVKRLRQLPKLF

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_6|2820_bp
atggagcctatatatccttttgcacggccccagatgaataccagaaatccaaagcttgtg
gtgactgagaagaccatccgacttgcttatcgtcatgctaagcagaataaaaaaaattcg
tcatgctttttacttggttctctgacagcagacgaagatgaagaaggtgtaacattgaca
gtagatcgctttgatcctggtcgagaagtacctgaatgcctagaaataacccctactgct
tctcttcctggggactttttgattccatgcaaagttcatactcaagaactttgttcaaga
gaaatgatagttcacagtgtagatgacttcagttcagctttaaaggctctacagtgccat
atatgtagcaaagattccttggactgtggtaagctgctttccctaagagttcatatcact
tccagggagagtttggacagtgtggaatttgacttgcattgggcagcagtaactctagca
aataactttaaatgcacacctgtgaagcccatccccattattccaacagctctggcaaga
aacttgagcagtaatctgaatatttctcaagttcaagggacttataaatatggggttttt
tcagaatctggaaatttcatcatagttctctattctatgacacataaggaacctgagttt
tatgaatgcttcccttgtgatggcaagatacctgactttcggtttcagttgctaaccagt
aaggaaacattacatcttttcaaaaatgttgaacctcctgacaaaaatccaatccgttgt
gaactgagcgctgaaagccaaaatgcagaaacagagtttttcagtaaggcttccaagaat
ttttcaattaagaggtcttcccaaaagttatcttctgggaagatgccaatacatgatcac
gactctggtgttgaagatgaagatttttctccaagaccaattcctagtcctcatccaatt
tctaagatccaaccatcagttcctgaactttcacttgtgttggatggcaatttcatagaa
tcaaaccctctgcctactccattggaaatggtgaataatgaaaatcctcctttgattaac
cacttggaacacttgaagccattgcaaccccagctttatgatgagaaacacagtccagaa
gttgaagctggagagccttccttgagaggaataccaaatcagttaaaccaggataaacca
gctcttttgagacactgcaaaacaactgctgttgaagacacagtgcaagctggaagacaa
atggagttggtttctgtggaagcacagtcttcccctggcttgcacatgagaaaaggtgta
agcattgctgtgagcacaggtgctagcttgttttggaatgcagcaggtgaggatcaagag
cctgactctcaaatgaagcaagatgataccaaaatttccagtgaggacatgaatttttct
gtcgatattaataatgaagtcacaagtcttccaggtagtgcatcttcattaaaagcagtt
gatattcccagttttgaagagagcaacattgctgtggaagaagaatttaaccagccactt
tctgtatccaactcttctctagttgtgagaaaagaacctgatgtacctgtgttctttcca
agtggccagctggcagaaagtgtaagcatgtgtttacagactggaccaacagggggtgcc
agtaacaattctgaaacatcagaggaaccaaaaattgagcatgtaatgcaacccttgctt
catcaaccatcagataaccagaaaatttaccaggatttattgggtcaagtaaaccaccta
ttaaatagttcctccaaggaaactgagcagccgtctaccaaagcagtaattatcagtcat
gaatgcaccagaacccaaaacgtttaccatacaaagaaaaaaacacatcattcaagactg
gtggacaaagattgtgtccttaatgcaactcttaagcaactaagaagccttggagtaaaa
attgattctcccactaaagtgaagaaaaatgcacataacgtggatcacgccagtgtgttg
gcatgcatcagcccagaagcagtgatctctggattaaactgcatgtcatttgctaatgtt
ggcatgagcggcttaagccccaatggtgtggatttgagcatggaggcaaatgctatagct
ctgaaatatttaaatgaaaatcagctgtcacaactgtctgtcactcgatcgaaccaaaat
aattgtgacccattcagccttctccatattaatacagacagaagcacagtggggcttagt
ttaatttcaccaaacaacatgtcatttgcaaccaaaaaatatatgaagagatatggactc
ctacaaagcagtgacaatagtgaagatgaagaggaacctcccgacaatgcagatagcaag
agtgaatatttattgaatcagaaccttaggtccatacctgaacagcttggtggtcagaaa
gagccttctaagaatgaccatgaaataattaattgttctaactgtgaatctgtggggacc
aacgcagatacgccagtattgagaaatattacaaatgaagttttgcagacaaaagcaaaa
cagcagttgactgaaaagccagctttcttagtaaagaaccttaaaccaagtcctgcagtg
aaccttcgaaccgggaaagcagagttcactcaacatcctgagaaagaaaatgaaggggac
attacaatttttcctgaaagtttgcaaccttctgaaacgctaaagcagatgaatagcatg
aattcagtaggcaccttcttagatgtaaaacgtctcagacagttaccaaaattattttaa

>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_7|228_aa
MLSRCRSGLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYG
YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK
FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_7|687_bp
atgctgagccgctgccgcagcgggctgctccacgtcctgggccttagcttcctgctgcag
acccgccggccgattctcctctgctctccacgtctcatgaagccgctggtcgtgttcgtc
ctcggcggccccggcgccggcaaggggacccagtgcgcccgcatcgtcgagaaatatggc
tacacacacctttctgcaggagagctgcttcgtgatgaaaggaagaacccagattcacag
tatggtgaacttattgaaaagtacattaaagaaggaaagattgtaccagttgagataacc
atcagtttattaaagagggaaatggatcagacaatggctgccaatgctcagaagaataaa
ttcttgattgatgggtttccaagaaatcaagacaaccttcaaggatggaacaagaccatg
gatgggaaggcagatgtatctttcgttctcttttttgactgtaataatgagatttgtatt
gaacgatgtcttgagaggggaaagagtagtggtaggagtgatgacaacagagagagcttg
gaaaagagaattcagacctaccttcagtcaacaaagccaattattgacttatatgaagaa
atggggaaagtcaagaaaatagatgcttctaaatctgttgatgaagtttttgatgaagtt
gtgcagatttttgacaaggaaggctaa

>gi568815597r:47151139_47410319|GENSCAN_predicted_peptide_8|36_aa
XGQSHEGKASLKKRNLREAGSALMNSHKGIPIKVWA

>gi568815597r:47151139_47410319|GENSCAN_predicted_CDS_8|111_bp
ngaggacaaagccatgaaggaaaagcctcactgaagaagaggaacctaagagaagcaggt
tctgctctgatgaactcccataaaggcattcccataaaggtgtgggcctga