GENSCAN 1.0	Date run:  3-Nov-116	Time: 17:57:32

Sequence gi568815578f:50410528_50681460 : 270933 bp : 47.95% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  36995  37033   39  1  0   72  103    25 0.601   2.59
 1.02 Term +  45407  45784  378  1  0   75   39   230 0.946  11.59
 1.03 PlyA +  46880  46885    6                               1.05

 2.06 PlyA -  52415  52410    6                               1.05
 2.05 Term -  57111  56991  121  2  1   69   48    85 0.569   0.55
 2.04 Intr -  58209  57969  241  1  1   -1   13   312 0.004  11.41
 2.03 Intr -  60308  60272   37  2  1   92  100     3 0.006  -0.26
 2.02 Intr -  68794  68708   87  1  0   79   80   134 0.993  11.87
 2.01 Init -  72024  72004   21  0  0   93  110    16 0.988   3.50
 2.00 Prom -  73188  73149   40                              -2.16

 3.00 Prom +  73301  73340   40                              -5.96
 3.01 Init +  79307  79319   13  1  1   84   97     2 0.254   1.04
 3.02 Intr +  93355  93476  122  2  2  112   89    23 0.034   5.01
 3.03 Intr +  97986  98115  130  2  1   41   60    87 0.005   1.47
 3.04 Intr +  99945 100063  119  1  2  -14   80   158 0.006   4.98
 3.05 Intr + 123146 123244   99  1  0   64   94    82 0.088   6.71
 3.06 Intr + 150836 150926   91  1  1  118   95    54 0.941   8.67
 3.07 Intr + 154442 154542  101  0  2  106  115   103 0.945  14.63
 3.08 Intr + 157853 157951   99  1  0  115  123    30 0.081   9.51
 3.09 Intr + 163990 164127  138  0  0   83   79    63 0.071   5.56
 3.10 Intr + 167893 168102  210  0  0   87   95    51 0.368   4.81
 3.11 Intr + 168641 168802  162  1  0  119   76   247 0.996  26.77
 3.12 Intr + 169176 169399  224  2  2   71   85   309 0.855  25.83
 3.13 Intr + 170738 170933  196  2  1   77   75   249 0.983  21.92
 3.14 Term + 170952 171065  114  2  0   46   39    88 0.685  -1.73
 3.15 PlyA + 172035 172040    6                               1.05

 4.24 PlyA - 172590 172585    6                               1.05
 4.23 Term - 176805 176705  101  1  2   95   42    74 0.799   1.79
 4.22 Intr - 177365 177275   91  2  1   75   23   142 0.829   5.97
 4.21 Intr - 179242 179159   84  1  0   99  105   102 0.726  13.02
 4.20 Intr - 182019 181817  203  1  2  113  102   194 0.942  22.30
 4.19 Intr - 182669 182508  162  0  0   69  116   150 0.981  15.85
 4.18 Intr - 184977 184842  136  0  1   29   89    66 0.483   0.94
 4.17 Intr - 185736 185613  124  2  1   29   39   147 0.616   4.49
 4.16 Intr - 186368 186225  144  1  0  112    6    69 0.489   0.50
 4.15 Intr - 187183 187053  131  1  2   88  117   213 0.833  23.69
 4.14 Intr - 192117 191545  573  0  0   79   86   513 0.934  43.14
 4.13 Intr - 194247 194118  130  2  1  109  105   164 0.999  20.90
 4.12 Intr - 197230 197126  105  0  0  113   58    29 0.765   1.73
 4.11 Intr - 198007 197862  146  1  2   84   81   281 0.980  26.08
 4.10 Intr - 198211 198086  126  1  0   74   81   304 0.998  29.18
 4.09 Intr - 198428 198385   44  0  2   54   80    24 0.678  -3.84
 4.08 Intr - 198829 198766   64  1  1   74   87    84 0.726   5.19
 4.07 Intr - 199195 199046  150  1  0   86   64   346 0.524  32.36
 4.06 Intr - 200677 200654   24  1  0  128  113    34 0.577   8.12
 4.05 Intr - 205553 205475   79  1  1  121   85    25 0.994   5.05
 4.04 Intr - 209605 209459  147  0  0   96   80   206 0.100  19.95
 4.03 Intr - 213787 213704   84  0  0   59   90    56 0.001   1.84
 4.02 Intr - 220329 220211  119  0  2  158   96   131 0.049  20.16
 4.01 Init - 221486 221430   57  2  0   44   38    74 0.066  -0.69
 4.00 Prom - 227511 227472   40                              -3.46

 5.00 Prom + 236093 236132   40                              -0.86
 5.01 Init + 248332 248389   58  0  1   23   88    84 0.520   3.37
 5.02 Intr + 249320 249473  154  0  1   86   19    64 0.262  -1.57
 5.03 Intr + 251494 251618  125  1  2   79   19   132 0.445   5.63
 5.04 Term + 251669 251727   59  0  2   79   42    82 0.381   0.55
 5.05 PlyA + 251747 251752    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  99940  99699  242  2  2  102   38   183 0.806  10.89
S.002 Init + 210232 210459  228  0  0  110   35   357 0.857  30.97


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:50410528_50681460|GENSCAN_predicted_peptide_1|138_aa
MKKKKEKHKFQRVLWEQAVWLEEEAELRWAPDGFGNRKEVGSWPHTDPLLWAFENSAKRR
NMGSVFAGASPKPNRTPRASWSKVLANLKTHPVEPQGAEGHRRGPASKAVADRTGTISTQ
RHRVMSSRLRPGIVTAPL

>gi568815578f:50410528_50681460|GENSCAN_predicted_CDS_1|417_bp
atgaagaaaaagaaggaaaagcataaattccagagggtgctgtgggagcaggcggtgtgg
ctggaggaggaagctgaattgcgttgggctccagatgggtttgggaaccggaaggaagtg
ggaagctggccccacacagacccacttctctgggcctttgagaacagtgccaagaggcgc
aacatgggctcagtatttgccggggcctctcctaaaccaaacaggacgccacgggcaagt
tggagcaaagtcctggcaaacctgaagacacatcccgtggagccccaaggagccgagggt
cacaggaggggccctgcctccaaggccgtggcagacagaactggcaccatctccacacag
cgtcaccgagtgatgtccagtcgtctcaggccggggattgtaactgccccgctctga

>gi568815578f:50410528_50681460|GENSCAN_predicted_peptide_2|168_aa
MELLILQKPPDPSRQRHKWLDAKKNALVEEDTSDGQCSSLRLPFPDKEGLGVKQDSVSKK
PTNQKKKNQEEEKKEEEEEEEKEEKKEKEKEKEEEKEKKEEKEKKKEGRGGGGGGRKRRK
EEGGRALFIPIFGINRLSLPPPPPEYNLIPNKETRKVNKLIRGTHTKS

>gi568815578f:50410528_50681460|GENSCAN_predicted_CDS_2|507_bp
atggagttgctgatccttcagaaacccccagaccctagcaggcagagacacaagtggctg
gatgccaagaagaacgcactggtggaagaagacacaagcgacggccagtgttcatctcta
agacttccttttccagataaagaaggcctgggtgtcaagcaagactctgtttcaaaaaaa
ccaacaaaccaaaagaagaagaatcaagaagaagagaagaaggaggaggaagaggaggag
gagaaggaggagaagaaggagaaggagaaggagaaggaggaggagaaggagaagaaggaa
gagaaggagaagaagaaagaaggaagaggaggaggaggaggaggaagaaaaagaagaaaa
gaagaaggaggaagagctttatttattcctatcttcggtattaacagactatccctgccc
ccgccaccacctgaatacaacttgattccaaataaggaaacaaggaaagtgaacaaactt
attcgtgggacccatactaagtcctag

>gi568815578f:50410528_50681460|GENSCAN_predicted_peptide_3|605_aa
MSQPGMSLAVPKSANQSKCPNSLRRAWVNLVGGRAIFLPGYVYPVDHRYENQLELLVKMQ
IPGLIPRPKISESFGDGSRNLHYSTHFPERQTAQWAEKEAQQPPWPVMEMEKEFEQIDKS
GSWAAIYQQKGTPLPPPRKEDLMYHFRKVQSGITVTKKIGQDIRHEASDFPCRVAKLPKN
KNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRSYILTQGPLPNTCGHFWEMVW
EQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIG
RSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF
IMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPHNGKCREFFPNHQWVKEETQE
DKDCPIKEEKGSPLNAAPYGIESMSQDTEVRSRVVGGSLRGAQAASPAKGEPSLPEKDED
HALSYWKPFLVNMCVATVLTAGAYLCYRTRWRDARVQRALAASPMVGFSSVVHLSQSQKK
QIKGF

>gi568815578f:50410528_50681460|GENSCAN_predicted_CDS_3|1818_bp
atgagccagccagggatgtctctggctgtccctaagtcagccaaccagtcaaagtgccca
aactctcttaggcgagcatgggtgaatcttgtggggggaagagccatcttccttcctggc
tatgtgtacccagtggatcataggtacgagaatcagctggagttgttggtgaaaatgcag
attccgggtctcatccctagaccaaagatatctgaatcatttggcgatgggtccaggaac
ctgcattattcaacacacttcccagagcggcagacggcgcagtgggccgagaaggaggcg
cagcagccgccctggcccgtcatggagatggaaaaggagttcgagcagatcgacaagtcc
gggagctgggcggccatttaccagcagaaagggacacccttgcccccccccagaaaggaa
gatttgatgtaccacttccgaaaggttcagtcgggcatcactgtaaccaagaagataggt
caggatatccgacatgaagccagtgacttcccatgtagagtggccaagcttcctaagaac
aaaaaccgaaataggtacagagacgtcagtccctttgaccatagtcggattaaactacat
caagaagataatgactatatcaacgctagtttgataaaaatggaagaagcccaaaggagt
tacattcttacccagggccctttgcctaacacatgcggtcacttttgggagatggtgtgg
gagcagaaaagcaggggtgtcgtcatgctcaacagagtgatggagaaaggttcgttaaaa
tgcgcacaatactggccacaaaaagaagaaaaagagatgatctttgaagacacaaatttg
aaattaacattgatctctgaagatatcaagtcatattatacagtgcgacagctagaattg
gaaaaccttacaacccaagaaactcgagagatcttacatttccactataccacatggcct
gactttggagtccctgaatcaccagcctcattcttgaactttcttttcaaagtccgagag
tcagggtcactcagcccggagcacgggcccgttgtggtgcactgcagtgcaggcatcggc
aggtctggaaccttctgtctggctgatacctgcctcttgctgatggacaagaggaaagac
ccttcttccgttgatatcaagaaagtgctgttagaaatgaggaagtttcggatggggctg
atccagacagccgaccagctgcgcttctcctacctggctgtgatcgaaggtgccaaattc
atcatgggggactcttccgtgcaggatcagtggaaggagctttcccacgaggacctggag
cccccacccgagcatatccccccacctccccggccacccaaacgaatcctggagccacac
aatgggaaatgcagggagttcttcccaaatcaccagtgggtgaaggaagagacccaggag
gataaagactgccccatcaaggaagaaaaaggaagccccttaaatgccgcaccctacggc
atcgaaagcatgagtcaagacactgaagttagaagtcgggtcgtggggggaagtcttcga
ggtgcccaggctgcctccccagccaaaggggagccgtcactgcccgagaaggacgaggac
catgcactgagttactggaagcccttcctggtcaacatgtgcgtggctacggtcctcacg
gccggcgcttacctctgctacaggacgcgctggcgagatgctcgtgtgcagagagcactg
gccgctagcccgatggtaggattcagttctgtggtgcatctgagccagtctcagaagaaa
cagatcaaaggtttttaa

>gi568815578f:50410528_50681460|GENSCAN_predicted_peptide_4|1007_aa
MLEHGGLIVQEDEVDWSFFVTTMSVRLRFLSPGDTGAVGVVGRSASFAGFSSAQSRRIAN
LPFPESAALTVSASLKMANLRRARFKRKSINRNSVRSRMPAKSSKMYGTLRKGSVCADPK
PQQVKKIFEALKRGLKEYLCVQQAELDHLSGRHKDTRRNSRLAFYYDLDKVDELYEDYCI
QCRLRDGASSMQRAFARCPPSRAARESLQELGRSLHECAEDMWLIEGALEVHLGEFHIRM
KGLVGYARLCPGDHYEVLMRLGRQRWKLKGRIESDDSQTWDEEEKAFIPTLHENLDIKVT
ELRGLGSLAVGAVTCDIADFFTTRPQVIVVDITELGTIKLQLEVQWKVGVRAGGHKAAAL
SLVSWVNSVERPPAPSGSSPVCPFDTESFLVSPSPTGKFSMGSRKGSLYNWTPPSTPSFR
ERYYLSVLQQPTQQALLLGGPRATSILSYLSDSDLRGPSLRSQSQELPEMDSFSSEDPRD
TETSTSASTSDVGFLPLTFGPHASIEEEAREDPLPPGLLPEMAHLSGGPFAEQPGWRNLG
GESPSLPQGSLFHSGTASSSQNGHEEGATGDREDGPGVALEGPLQEVLELLRPTDSTQPQ
LRELEYQVLGFRDRLKPCRARQEHTSAESLMECILESFAFLNADFALDELSLFGGSQGLR
AHTSHDSFPRGYAASPAPAPEGFCIRISPHGRAEAQFLLLASHNPTDEKDRPLPPPSSLK
ASSRELTAGAPELDVLLMVHLQVCKALLQKLASPNLSRLVQECLLEEVAQQKHVLETLSV
LDFEKVGKATSIEETCRRLLEQVVSCGGLLPGAGLPEEQIITWFQFHSYLQRQSVSDLEK
HFTQLTKEVTLIEELHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAA
SARLAGAVRNRSFREKALLFYTNALAENDARLQQAACLALKHLKGIESIDQTASLCQSDL
EAVRAAARETTLSFGEKGRLAFEKMDKLCSEQREVFCQEADVEITIF

>gi568815578f:50410528_50681460|GENSCAN_predicted_CDS_4|3024_bp
atgttggaacatgggggtctcatcgtgcaggaagatgaggtggactggagctttttcgtg
accaccatgtcggtgaggttgcggttcctgtcccctggggacacaggggccgtgggggtc
gtgggccggagcgcctccttcgcaggcttcagcagtgcacagagccggaggatcgcaaac
ctgccttttcccgagtctgcagccctgaccgtctctgccagcctcaagatggcaaacttg
cggagggcccggttcaagagaaagtccatcaacaggaactccgtgagatcgcgaatgcct
gcaaaatcctccaagatgtacggcacgctgcggaaggggtcggtctgtgcagacccgaag
ccccagcaggtgaagaagatcttcgaagcattgaaaagaggcctcaaggagtatctgtgt
gtgcagcaggctgagctggaccacctgtctggacgccacaaagacaccaggaggaattcc
aggctggctttctattatgacctggacaaggtggatgagctgtacgaggactactgcatc
cagtgccgcctgcgcgacggcgcctccagcatgcagcgggccttcgcccggtgccccccg
agccgcgcagcccgagagagcctgcaggagctgggccgcagcctgcacgagtgcgccgag
gacatgtggctcatcgagggggccctggaggttcacctgggcgagttccacatcaggatg
aaaggcttggtgggctacgcacgcctctgtcccggagaccactatgaggtgctcatgcgt
ctgggccgccagcgttggaagctcaagggtcggatcgagtcagatgacagccagacctgg
gacgaagaggagaaggccttcatccccacgctgcatgagaacctggacatcaaggtgacg
gagttgcggggcctgggctcgctggctgtgggtgcagtgacgtgtgacatcgccgacttc
ttcacgacgcggccgcaggtcatcgtggtggacatcacggagttgggtaccatcaagctg
cagctggaggtgcagtggaaggtgggtgtccgagctgggggtcacaaagctgctgccctc
tccctcgtgagctgggtgaattctgttgagcgaccacctgcaccctcggggtcctcacct
gtctgcccgtttgatactgagagcttcctggtgtcacccagccccacgggcaagttttct
atgggcagcaggaagggctccttgtacaactggacacccccgagcacccccagcttccgg
gagagatactacctgtctgtcctacagcagccaacacagcaggccttgctgctgggtggc
ccaagggccacctccatcctcagctacctgtctgacagcgacctccggggtcccagccta
agaagccagagtcaggagctgcctgagatggactccttcagctctgaggacccccgagac
acggagaccagcacgtcggcgtccacctcagatgtgggcttcctgcccttgaccttcggt
ccccacgcctccattgaagaggaggctcgggaggaccccctgcccccaggtctcctgcca
gagatggcccacctctctggaggcccgtttgcagagcagcctggctggaggaacttagga
ggggagagccccagcctgccacagggctccctgttccacagcggcacagcctcgagtagc
cagaacggccacgaggaaggggcaaccggggacagagaggacgggcctggcgtggccctc
gaggggcctctgcaggaggtcctggagttgctgaggcccacggactccacccagccccag
ctccgggagctggagtaccaggtcctcggcttccgggaccggctgaagccctgcagagca
cggcaggagcacacctcggccgagagcctgatggagtgcatcctggagagcttcgccttc
ctcaatgccgacttcgccctggatgagctgtccctgtttgggggctcccagggtctccgg
gcccacacctctcatgacagcttccctcgaggctacgcagcctcacctgccccagccccc
gagggcttctgcatccgcatctcaccacatggaagagcagaggctcaattccttctcctc
gcctctcacaatcccacggacgaaaaggaccggcccctgcccccaccgtcatcactgaaa
gcgtcatccagggaactcacagccggtgccccagagctggacgtgctgctgatggtacac
ctccaagtctgcaaagctctgctgcagaaactggcctcccctaatttatcaaggctggtc
caggaatgcctcctggaagaagtggcacagcaaaagcacgttctggagacactttctgtc
cttgactttgagaaggtcggcaaggcaacatccattgaagagacgtgccgcaggctcctg
gagcaggtggtcagctgtggtgggctgctccccggagctgggctcccagaagaacagatc
attacctggttccagtttcacagctacctgcagaggcagagcgtctctgacctggagaag
cacttcacccagctcaccaaggaagtgacactcatcgaggagcttcactgtgcgggacag
gccaaggtggtccggaagctgcaggggaagcggctgggccagctccagcctctgccccag
accttaagagcctgggcgctgctccagctggacggcactccgagggtgtgcagggcggcc
agcgctcgcctggctggtgcagtcaggaacagaagcttccgggaaaaggctttgctgttc
tacaccaacgccctggcagagaacgacgcaaggctccagcaggccgcatgcctagcgctc
aaacacctcaagggcattgaaagcatcgaccagactgccagcctgtgccagtctgacctg
gaggccgtgcgggcggcagcccgggaaaccacactgtcgttcggtgaaaaaggacggtta
gcttttgagaagatggacaagctctgctcagaacaaagagaagtcttttgccaggaggca
gatgttgaaatcacaatattttaa

>gi568815578f:50410528_50681460|GENSCAN_predicted_peptide_5|131_aa
MPGLTLQGYVILQILVDLGDTLSPIRWRRHVTHMVWPLMTEQAMDTGPRRDHSLTGHEHE
FRYMPQKDEPGWFCNQQPLQTSLGGSKELTPDEEKDQPQTHSSSSHFQTHGRRQDPLKEE
PSEKKGKAKRN

>gi568815578f:50410528_50681460|GENSCAN_predicted_CDS_5|396_bp
atgccaggtcttactctccaaggctacgttatcctgcaaattctggtggacctgggagac
accctatctccaatcaggtggaggaggcacgtgacccacatggtctggccactgatgact
gaacaagctatggacaccggaccccggagagaccattcactcactggccacgaacatgag
ttcagatacatgccccaaaaggatgagcctggctggttctgcaatcagcagcccctccag
acatccctgggaggctccaaggagctgactcctgatgaggaaaaggatcagccgcagact
cactcctcctccagccacttccagacccacgggaggcggcaggaccctctgaaggaggag
ccctcagagaagaagggaaaagccaaaaggaattaa