Result of FASTA (ccds) for pF1KB5662
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5662, 372 aa
  1>>>pF1KB5662 372 - 372 aa - 372 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0339+/-0.000917; mu= -2.5026+/- 0.055
 mean_var=304.9786+/-64.924, 0's: 0 Z-trim(116.1): 302  B-trim: 3 in 1/53
 Lambda= 0.073441
 statistics sampled from 16351 (16690) to 16351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.513), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS6357.1 TRIB1 gene_id:10221|Hs108|chr8          ( 372) 2529 280.8 1.3e-75
CCDS64971.1 TRIB1 gene_id:10221|Hs108|chr8         ( 206) 1378 158.6 4.4e-39
CCDS1683.1 TRIB2 gene_id:28951|Hs108|chr2          ( 343) 1266 147.0 2.4e-35
CCDS77554.1 TRIB3 gene_id:57761|Hs108|chr20        ( 385)  992 118.0 1.4e-26
CCDS12997.1 TRIB3 gene_id:57761|Hs108|chr20        ( 358)  988 117.5 1.8e-26


>>CCDS6357.1 TRIB1 gene_id:10221|Hs108|chr8               (372 aa)
 initn: 2529 init1: 2529 opt: 2529  Z-score: 1470.8  bits: 280.8 E(32554): 1.3e-75
Smith-Waterman score: 2529; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KB5 MRVGPVRSAMSGASQPRGPALLFPATRGVPAKRLLDADDAAAVAAKCPRLSECSSPPDYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MRVGPVRSAMSGASQPRGPALLFPATRGVPAKRLLDADDAAAVAAKCPRLSECSSPPDYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SPPGSPCSPQPPPAAPGAGGGSGSAPGPSRIADYLLLPLAEREHVSRALCIHTGRELRCK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SPPGSPCSPQPPPAAPGAGGGSGSAPGPSRIADYLLLPLAEREHVSRALCIHTGRELRCK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VFPIKHYQDKIRPYIQLPSHSNITGIVEVILGETKAYVFFEKDFGDMHSYVRSRKRLREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VFPIKHYQDKIRPYIQLPSHSNITGIVEVILGETKAYVFFEKDFGDMHSYVRSRKRLREE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EAARLFKQIVSAVAHCHQSAIVLGDLKLRKFVFSTEERTQLRLESLEDTHIMKGEDDALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EAARLFKQIVSAVAHCHQSAIVLGDLKLRKFVFSTEERTQLRLESLEDTHIMKGEDDALS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DKHGCPAYVSPEILNTTGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DKHGCPAYVSPEILNTTGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 FCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLEPGYIDSEIGTSDQIVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLEPGYIDSEIGTSDQIVPE
              310       320       330       340       350       360

              370  
pF1KB5 YQEDSDISSFFC
       ::::::::::::
CCDS63 YQEDSDISSFFC
              370  

>>CCDS64971.1 TRIB1 gene_id:10221|Hs108|chr8              (206 aa)
 initn: 1378 init1: 1378 opt: 1378  Z-score: 815.1  bits: 158.6 E(32554): 4.4e-39
Smith-Waterman score: 1378; 100.0% identity (100.0% similar) in 206 aa overlap (167-372:1-206)

        140       150       160       170       180       190      
pF1KB5 LPSHSNITGIVEVILGETKAYVFFEKDFGDMHSYVRSRKRLREEEAARLFKQIVSAVAHC
                                     ::::::::::::::::::::::::::::::
CCDS64                               MHSYVRSRKRLREEEAARLFKQIVSAVAHC
                                             10        20        30

        200       210       220       230       240       250      
pF1KB5 HQSAIVLGDLKLRKFVFSTEERTQLRLESLEDTHIMKGEDDALSDKHGCPAYVSPEILNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 HQSAIVLGDLKLRKFVFSTEERTQLRLESLEDTHIMKGEDDALSDKHGCPAYVSPEILNT
               40        50        60        70        80        90

        260       270       280       290       300       310      
pF1KB5 TGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHISPKARCLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHISPKARCLIR
              100       110       120       130       140       150

        320       330       340       350       360       370  
pF1KB5 SLLRREPSERLTAPEILLHPWFESVLEPGYIDSEIGTSDQIVPEYQEDSDISSFFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SLLRREPSERLTAPEILLHPWFESVLEPGYIDSEIGTSDQIVPEYQEDSDISSFFC
              160       170       180       190       200      

>>CCDS1683.1 TRIB2 gene_id:28951|Hs108|chr2               (343 aa)
 initn: 1283 init1: 1215 opt: 1266  Z-score: 748.0  bits: 147.0 E(32554): 2.4e-35
Smith-Waterman score: 1275; 61.9% identity (81.2% similar) in 320 aa overlap (56-371:35-342)

          30        40        50        60         70        80    
pF1KB5 TRGVPAKRLLDADDAAAVAAKCPRLSECSSPPDYLSPP-GSPCSPQPPPAAPGAGGGSGS
                                     : . .::  :::  :. :  .  .      
CCDS16 RSTPITIARYGRSRNKTQDFEELSSIRSAEPSQSFSPNLGSPSPPETPNLSHCV------
           10        20        30        40        50              

           90       100       110       120       130       140    
pF1KB5 APGPSRIADYLLLPLAEREHVSRALCIHTGRELRCKVFPIKHYQDKIRPYIQLPSHSNIT
           : :. ::::   : .:: ::. .:.:.:: :::: :. ::... : . : .::::.
CCDS16 ----SCIGKYLLLEPLEGDHVFRAVHLHSGEELVCKVFDISCYQESLAPCFCLSAHSNIN
           60        70        80        90       100       110    

          150       160       170       180       190       200    
pF1KB5 GIVEVILGETKAYVFFEKDFGDMHSYVRSRKRLREEEAARLFKQIVSAVAHCHQSAIVLG
        :.:.::::::::::::...:::::.::. :.:::::::::: ::.:::::::....:: 
CCDS16 QITEIILGETKAYVFFERSYGDMHSFVRTCKKLREEEAARLFYQIASAVAHCHDGGLVLR
          120       130       140       150       160       170    

          210       220       230       240       250       260    
pF1KB5 DLKLRKFVFSTEERTQLRLESLEDTHIMKGEDDALSDKHGCPAYVSPEILNTTGTYSGKA
       :::::::.:. ::::...::::::..:..:.::.::::::::::::::::::.:.:::::
CCDS16 DLKLRKFIFKDEERTRVKLESLEDAYILRGDDDSLSDKHGCPAYVSPEILNTSGSYSGKA
          180       190       200       210       220       230    

          270       280       290       300       310       320    
pF1KB5 ADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHISPKARCLIRSLLRREPS
       ::::::::::::.::::::::: .::.:::::::::: ::: .::::.:::::.::::::
CCDS16 ADVWSLGVMLYTMLVGRYPFHDIEPSSLFSKIRRGQFNIPETLSPKAKCLIRSILRREPS
          240       250       260       270       280       290    

          330          340       350       360       370  
pF1KB5 ERLTAPEILLHPWFE---SVLEPGYIDSEIGTSDQIVPEYQEDSDISSFFC
       ::::. ::: ::::    :: . .:  .:.  :::.::. . . ... :: 
CCDS16 ERLTSQEILDHPWFSTDFSVSNSAYGAKEV--SDQLVPDVNMEENLDPFFN
          300       310       320         330       340   

>>CCDS77554.1 TRIB3 gene_id:57761|Hs108|chr20             (385 aa)
 initn: 1019 init1: 928 opt: 992  Z-score: 590.5  bits: 118.0 E(32554): 1.4e-26
Smith-Waterman score: 992; 46.6% identity (70.1% similar) in 348 aa overlap (15-360:27-365)

                           10        20        30        40        
pF1KB5             MRVGPVRSAMSGASQPRGPALLFPATRGVPAKRLLDADDAAAVAAKCP
                                 : :.  :  ::  ..  :. :. ::   . .. :
CCDS77 MVLMHLAVKNNRMSANNDHFLTPTWQQMRATPLAAPAG-SLSRKKRLELDDN--LDTERP
               10        20        30         40        50         

       50        60         70        80        90       100       
pF1KB5 RLSECSSPPDYLSPPGSPCS-PQPPPAAPGAGGGSGSAPGPSRIADYLLLPLAEREHVSR
         ..  : :.   :   ::  :  ::.::  . . ..:   ::.. :.::   :  .. .
CCDS77 VQKRARSGPQ---PRLPPCLLPLSPPTAPDRATAVATA---SRLGPYVLLEPEEGGRAYQ
        60           70        80        90          100       110 

       110       120       130       140       150       160       
pF1KB5 ALCIHTGRELRCKVFPIKHYQDKIRPYIQLPSHSNITGIVEVILGETKAYVFFEKDFGDM
       ::   :: :  :::.:...    ..:: .:: :....  .::. :    :.:: .  :::
CCDS77 ALHCPTGTEYTCKVYPVQEALAVLEPYARLPPHKHVARPTEVLAGTQLLYAFFTRTHGDM
             120       130       140       150       160       170 

       170       180       190       200       210       220       
pF1KB5 HSYVRSRKRLREEEAARLFKQIVSAVAHCHQSAIVLGDLKLRKFVFSTEERTQLRLESLE
       :: ::::.:. : ::: ::.:...:.::::: ..:: :::: .:::. .:: .: ::.::
CCDS77 HSLVRSRHRIPEPEAAVLFRQMATALAHCHQHGLVLRDLKLCRFVFADRERKKLVLENLE
             180       190       200       210       220       230 

       230       240       250       260       270       280       
pF1KB5 DTHIMKGEDDALSDKHGCPAYVSPEILNTTGTYSGKAADVWSLGVMLYTLLVGRYPFHDS
       :. .. : ::.: :::.:::::.::::.. ..::::::::::::: :.:.:.:.:::.::
CCDS77 DSCVLTGPDDSLWDKHACPAYVGPEILSSRASYSGKAADVWSLGVALFTMLAGHYPFQDS
             240       250       260       270       280       290 

       290       300       310       320       330       340       
pF1KB5 DPSALFSKIRRGQFCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLEP-GY
       .:  ::.::::: . .:  .:  ::::.: ::::::.:::::  ::::::...   : . 
CCDS77 EPVLLFGKIRRGAYALPAGLSAPARCLVRCLLRREPAERLTATGILLHPWLRQDPMPLAP
             300       310       320       330       340       350 

        350       360       370          
pF1KB5 IDSEIGTSDQIVPEYQEDSDISSFFC        
         :..  . :.::.                    
CCDS77 TRSHLWEAAQVVPDGLGLDEAREEEGDREVVLYG
             360       370       380     

>>CCDS12997.1 TRIB3 gene_id:57761|Hs108|chr20             (358 aa)
 initn: 1019 init1: 928 opt: 988  Z-score: 588.6  bits: 117.5 E(32554): 1.8e-26
Smith-Waterman score: 988; 46.5% identity (70.2% similar) in 346 aa overlap (17-360:2-338)

               10        20        30        40        50        60
pF1KB5 MRVGPVRSAMSGASQPRGPALLFPATRGVPAKRLLDADDAAAVAAKCPRLSECSSPPDYL
                       :.  :  ::  ..  :. :. ::   . .. :  ..  : :.  
CCDS12                MRATPLAAPAG-SLSRKKRLELDDN--LDTERPVQKRARSGPQ--
                              10         20          30        40  

                70        80        90       100       110         
pF1KB5 SPPGSPCS-PQPPPAAPGAGGGSGSAPGPSRIADYLLLPLAEREHVSRALCIHTGRELRC
        :   ::  :  ::.::  . . ..:   ::.. :.::   :  .. .::   :: :  :
CCDS12 -PRLPPCLLPLSPPTAPDRATAVATA---SRLGPYVLLEPEEGGRAYQALHCPTGTEYTC
                50        60           70        80        90      

     120       130       140       150       160       170         
pF1KB5 KVFPIKHYQDKIRPYIQLPSHSNITGIVEVILGETKAYVFFEKDFGDMHSYVRSRKRLRE
       ::.:...    ..:: .:: :....  .::. :    :.:: .  ::::: ::::.:. :
CCDS12 KVYPVQEALAVLEPYARLPPHKHVARPTEVLAGTQLLYAFFTRTHGDMHSLVRSRHRIPE
        100       110       120       130       140       150      

     180       190       200       210       220       230         
pF1KB5 EEAARLFKQIVSAVAHCHQSAIVLGDLKLRKFVFSTEERTQLRLESLEDTHIMKGEDDAL
        ::: ::.:...:.::::: ..:: :::: .:::. .:: .: ::.:::. .. : ::.:
CCDS12 PEAAVLFRQMATALAHCHQHGLVLRDLKLCRFVFADRERKKLVLENLEDSCVLTGPDDSL
        160       170       180       190       200       210      

     240       250       260       270       280       290         
pF1KB5 SDKHGCPAYVSPEILNTTGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRG
        :::.:::::.::::.. ..::::::::::::: :.:.:.:.:::.::.:  ::.:::::
CCDS12 WDKHACPAYVGPEILSSRASYSGKAADVWSLGVALFTMLAGHYPFQDSEPVLLFGKIRRG
        220       230       240       250       260       270      

     300       310       320       330       340        350        
pF1KB5 QFCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLEP-GYIDSEIGTSDQIV
        . .:  .:  ::::.: ::::::.:::::  ::::::...   : .   :..  . :.:
CCDS12 AYALPAGLSAPARCLVRCLLRREPAERLTATGILLHPWLRQDPMPLAPTRSHLWEAAQVV
        280       290       300       310       320       330      

      360       370          
pF1KB5 PEYQEDSDISSFFC        
       :.                    
CCDS12 PDGLGLDEAREEEGDREVVLYG
        340       350        




372 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:53:42 2016 done: Thu Nov  3 17:53:43 2016
 Total Scan time:  2.850 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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