GENSCAN 1.0	Date run:  3-Nov-116	Time: 17:34:38

Sequence gi568815587f:128658113_128910985 : 252873 bp : 46.12% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  10412  10457   46  1  1   81   96    21 0.039   3.04
 1.02 Intr +  28542  28589   48  1  0   53  116    51 0.058   3.05
 1.03 Term +  32348  32568  221  0  2    4   48   224 0.234   7.20
 1.04 PlyA +  34522  34527    6                               1.05

 2.04 PlyA -  34549  34544    6                              -0.45
 2.03 Term -  35099  34639  461  0  2   91   48   116 0.089   3.15
 2.02 Intr -  49324  49187  138  2  0  125   71     6 0.370   3.04
 2.01 Init -  53449  53371   79  1  1   63   82    27 0.164   0.82
 2.00 Prom -  54411  54372   40                              -5.76

 3.00 Prom +  54526  54565   40                              -3.16
 3.01 Init +  66214  66280   67  0  1   83   94    23 0.196   3.64
 3.02 Intr +  85990  86156  167  2  2   75  103   113 0.034  11.18
 3.03 Intr + 100003 100214  212  0  2  106  115   297 0.989  31.91
 3.04 Intr + 103133 103307  175  2  1   47   90    39 0.493  -0.06
 3.05 Intr + 106819 106922  104  0  2   48   89    72 0.213   2.27
 3.06 Intr + 110006 110160  155  2  2  103   91   281 0.999  29.62
 3.07 Intr + 111036 111161  126  1  0   40   75   105 0.845   5.05
 3.08 Intr + 114670 114873  204  2  0  105  106   176 0.547  20.27
 3.09 Intr + 123846 123911   66  1  0  117  115    23 0.734   6.78
 3.10 Intr + 136653 136687   35  1  2   89   64    31 0.045  -1.26
 3.11 Term + 142922 143080  159  1  0   73   43   170 0.173   8.94
 3.12 PlyA + 144295 144300    6                               1.05

 4.00 Prom + 146923 146962   40                              -6.56
 4.01 Init + 148142 148382  241  1  1   77  116   160 0.974  15.75
 4.02 Intr + 149068 149127   60  2  0  134   82     5 0.888   3.21
 4.03 Intr + 151045 151092   48  2  0   77  105    59 0.973   5.15
 4.04 Intr + 152347 152708  362  2  2   71   61   518 0.427  42.34
 4.05 Term + 162499 162519   21  0  0  123   34    24 0.118  -1.19
 4.06 PlyA + 163267 163272    6                               1.05

 5.03 PlyA - 165746 165741    6                               1.05
 5.02 Term - 166792 166427  366  1  0  108   52   101 0.473   3.10
 5.01 Init - 169932 169891   42  0  0   49   94    61 0.569   3.28
 5.00 Prom - 171547 171508   40                              -4.56

 6.03 PlyA - 171945 171940    6                               1.05
 6.02 Term - 182152 181013 1140  1  0   77   42   611 0.881  47.36
 6.01 Init - 184305 184270   36  0  0   85  111    55 0.987   7.51
 6.00 Prom - 194024 193985   40                              -1.96

 7.06 PlyA - 194190 194185    6                              -1.95
 7.05 Term - 194703 194432  272  1  2  108   47   177 0.994  11.25
 7.04 Intr - 196051 195955   97  1  1   85   61    88 0.730   5.38
 7.03 Intr - 201925 201901   25  0  1   65  107    52 0.236   2.83
 7.02 Intr - 202549 202495   55  2  1   78   58    45 0.554  -1.46
 7.01 Init - 206891 206828   64  2  1  104   78    41 0.522   6.01
 7.00 Prom - 209682 209643   40                              -7.26

 8.00 Prom + 211991 212030   40                              -5.76
 8.01 Init + 213001 213015   15  0  0   62  115    -5 0.028   0.01
 8.02 Intr + 218199 218444  246  2  0   67   55   129 0.006   5.16
 8.03 Intr + 222249 222384  136  2  1   25   44    98 0.003  -0.76
 8.04 Intr + 232335 232412   78  1  0   58   91    88 0.930   5.62
 8.05 Term + 232528 232871  344  2  2  117   38   109 0.354   3.47
 8.06 PlyA + 235332 235337    6                               1.05

 9.07 PlyA - 235527 235522    6                              -0.45
 9.06 Term - 236458 236331  128  2  2  103   47   106 0.983   6.44
 9.05 Intr - 242597 242450  148  2  1   40  113    85 0.706   6.01
 9.04 Intr - 243773 243702   72  2  0   51   94    62 0.416   2.70
 9.03 Intr - 244117 244057   61  0  1    6   53    60 0.163  -6.96
 9.02 Intr - 245342 245255   88  0  1   56  105    54 0.487   2.93
 9.01 Init - 246454 246319  136  1  1   61   95   131 0.813   9.71
 9.00 Prom - 250239 250200   40                              -3.06


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  86004  86156  153  2  0   83  103   121 0.866  13.08
S.002 Init - 143056 142930  127  1  1   65   22   112 0.805   2.84
S.003 Init + 186141 186165   25  2  1   95   82    43 0.851   4.09
S.004 Term - 218470 218121  350  2  2   31   39   243 0.850   8.35
S.005 Init + 231121 231130   10  0  1   39  116     9 0.923  -0.58


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_1|104_aa
MVGFPQEEKKRDWKPATHDVSDSPRHVVLHQVWGRRSPGSPCLESLDRVKRADIERAKTR
FDPPLPSRGKQDFRIFENTVKCEWCEASRLTSVPNENAPNPNIS

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_1|315_bp
atggtagggttccctcaggaagagaagaagagggactggaagccagctacccacgatgtt
tcagacagtccccgacacgtcgtcttacatcaagtctggggccgaagaagcccgggaagc
ccgtgtctggaaagtcttgaccgggtcaaaagggctgacattgagcgagccaagacacgt
ttcgacccgccgctcccctcccgggggaagcaggacttccgcatctttgaaaatactgtc
aagtgcgaatggtgcgaggcaagtcgtctcaccagcgttccaaatgaaaatgctccaaat
ccaaatatttcctga

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_2|225_aa
MIRDYPFDKFQMPSFDKREIKYYILKEKCKKYRCPSSPSPLGKSYVAPKTVFEKEDLCPS
TNVFLLWRSRRAEGGDPRRPRPPIRIFSSQTPSAYPDPTAQALTPRQESPFLVPRELTLP
RDVPSRTVSRSQERSTQQRRADPDFSRGETRRPALWTVLPTQPGGRRSPAQPGDLPASLL
GRRAPQLEQPRGAGPFRPDSLLPDIQNRLPCPRSPDHALDLLTFI

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_2|678_bp
atgattcgtgactatccttttgataaattccaaatgccctcatttgataaaagggaaata
aagtattacattcttaaagaaaagtgcaaaaagtacaggtgcccttcaagtccctcacct
ctagggaagtcctatgttgcaccaaagaccgtatttgagaaagaggacttgtgcccttcg
accaatgtgttcttattatggagaagtcgaagggcagagggcggagatccgcggcgccct
aggccacctatccgcatcttctcgagccaaacccccagcgcttacccggacccgacggcc
caagcactgactcccaggcaagagtcgcccttcctggtccccagggaactgacactaccg
cgggacgttccctctaggacagtcagcaggtcccaggagcgcagcacgcaacagcgcaga
gcagacccagacttttcccggggtgagacccggaggcccgcgctctggaccgtcctccct
acccagcctggaggccggcgttccccggcccaacccggagacctccccgcctccctcctg
ggccgccgcgcgccccagttggagcagcctcgaggggctgggccctttcggccggactcc
cttctcccggacatccaaaacaggttaccttgtccacgctctccggaccacgctttggac
ttgctcacttttatttaa

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_3|489_aa
MGWCQASESATDMGQQVRRQDTEGRAKMTINGAMKLMNTELSELTRRQSGHIMHQQKWDN
FERDKHFLEQQHKAELFQEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKI
NPLPPQQEWINQPVRVNVKREYDHMNGSSHMTLSLTSFGFLYLNLTFSEASPGHLIETSA
SSLFTLLRVSVLVLITSLTDTWAGPETVLVQKPGTEDRAIFQRRNTLAGERPNRSPVQLE
SRESPVDCSVSKCSKLVGGGESNPMNYNSYMDEKNGPPPPNMTTNERRVIVPAENKIIVQ
SFSPLAGHSTPASTSKLSCLHKKGVYKLPRVELVPDPTLWTQEHVRQWLEWAIKEYSLME
IDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESSLLAYNTTSHTDQSSR
LSVKEGICKIEKFNMGQKQTKIINWYTGADGHIFTHWAFGCHLKFVSSQEADSRHHIREG
LHARSGFFS

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_3|1470_bp
atgggatggtgccaggccagtgagagtgccacggatatggggcagcaggtgaggaggcag
gacacagaagggagagcaaagatgacaatcaatggggccatgaagctcatgaacactgag
ttatctgagcttactcgtagacagagtggccatataatgcatcaacaaaagtgggataat
tttgagcgggataagcatttcctggaacaacagcataaagcggaactgttccaggaggct
ctgtcggtggtgagcgacgaccagtccctctttgactcagcgtacggagcggcagcccat
ctccccaaggccgacatgactgcctcggggagtcctgactacgggcagccccacaagatc
aaccccctcccaccacagcaggagtggatcaatcagccagtgagggtcaacgtcaagcgg
gagtatgaccacatgaatggatccagtcatatgactctctccctcacgagttttgggttt
ctctacctgaacctcaccttttcagaggcctcccctggccacctgatcgaaaccagcgcc
tcctcactctttaccctgcttagagtgtctgtcctagttcttatcacctccctcactgac
acgtgggcagggcctgaaacggtcctagtgcagaagcctgggaccgaggacagggccatt
ttccagaggagaaacaccctggcgggcgagcggccaaaccgatcacctgtccagctggag
agcagggagtctccggtggactgcagcgttagcaaatgcagcaagctggtgggcggaggc
gagtccaaccccatgaactacaacagctatatggacgagaagaatggcccccctcctccc
aacatgaccaccaacgagaggagagtcatcgtccccgcagaaaataaaatcatcgttcag
tccttcagtccattggctggacactccaccccagctagcaccagcaagctcagctgcctg
cacaagaagggtgtttacaaactgccacgtgtagaactggtgccagaccccacactgtgg
acacaggagcatgtgaggcaatggctggagtgggccataaaggagtacagcttgatggag
atcgacacatcctttttccagaacatggatggcaaggaactgtgtaaaatgaacaaggag
gacttcctccgcgccaccaccctctacaacacggaagtgctgttgtcacacctcagttac
ctcagggaaagttcactgctggcctataatacaacctcccacaccgaccaatcctcacga
ttgagtgtcaaagaagggatctgtaagatcgagaagtttaacatgggtcagaaacagacc
aagatcatcaactggtacactggtgccgacggccacatttttacacactgggcctttggc
tgccacctcaagtttgtcagttctcaggaggcagactccaggcaccacattcgagagggc
ctccatgcacgctcaggcttcttctcatag

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_4|243_aa
MHWSHKREREIKHTQNSFLLVGIKEGFVDLVALELALEGEAGFGPVAIWAGEDMSLACLT
VSEDLRFLELRMCDAEEVWKGPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQ
IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALR
YYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTESSMYKYPSDISYMPSYHAHQQKEHQ
IIQ

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_4|732_bp
atgcactggtcccataagcgggagagagaaatcaagcacacacagaactcctttcttctg
gttggtatcaaggaaggctttgtggacctggtagcacttgagttagctctggaaggagag
gcaggatttggacctgtggcgatatgggctggggaagacatgagcttggcatgtctgaca
gtcagtgaggacctcaggttcctggagcttaggatgtgtgatgcagaagaagtctggaaa
ggtcctccccttggaggggcacaaacgatcagtaagaatacagagcaacggccccagcca
gatccgtatcagatcctgggcccgaccagcagtcgcctagccaaccctggaagcgggcag
atccagctgtggcaattcctcctggagctgctctccgacagcgccaacgccagctgtatc
acctgggaggggaccaacggggagttcaaaatgacggaccccgatgaggtggccaggcgc
tggggcgagcggaaaagcaagcccaacatgaattacgacaagctgagccgggccctccgt
tattactatgataaaaacattatgaccaaagtgcacggcaaaagatatgcttacaaattt
gacttccacggcattgcccaggctctgcagccacatccgaccgagtcgtccatgtacaag
tacccttctgacatctcctacatgccttcctaccatgcccaccagcagaaggaacatcaa
atcatccagtga

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_5|135_aa
MNPIILQLHELELQPSAPCGSQHPRPPPPELPPASPNIPSPKAAPNPQAAPRALGHPHPA
APELSPVSPGPQRPRPPPTRSCPLSSPHLPVPKAAPHPELLPEYPAPRALGCPSPLSCYP
RTPPPAPSAAPHPQG

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_5|408_bp
atgaatcctatcatcctacaactccacgaactggagctgcagccctcggccccctgtggc
tcccagcaccctcggccacccccacccgagctgccccctgcgtcccccaacattccctcg
cccaaggctgcccccaacccccaagctgctccccgcgccctcggccacccccacccggct
gctcccgagctgtcccctgtatcccccggcccccaacgccctcggccaccccccacccgg
agctgccccctgagttccccccacctccctgtgcccaaggctgccccccacccggagctg
ctcccggagtaccccgccccgcgcgctctcggctgcccctcacccttgagctgctacccg
cgtaccccgccccccgcgccctcggctgccccccacccccagggctga

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_6|391_aa
MNASSRNVFDTLIRVLTESMFKHLRKWVVTRFFGHSRQRARLVSKDGRCNIEFGNVEAQS
RFIFFVDIWTTVLDLKWRYKMTIFITAFLGSWFFFGLLWYAVAYIHKDLPEFHPSANHTP
CVENINGLTSAFLFSLETQVTIGYGFRCVTEQCATAIFLLIFQSILGVIINSFMCGAILA
KISRPKKRAKTITFSKNAVISKRGGKLCLLIRVANLRKSLLIGSHIYGKLLKTTVTPEGE
TIILDQININFVVDAGNENLFFISPLTIYHVIDHNSPFFHMAAETLLQQDFELVVFLDGT
VESTSATCQVRTSYVPEEVLWGYRFAPIVSKTKEGKYRVDFHNFSKTVEVETPHCAMCLY
NEKDVRARMKRGYDNPNFILSEVNETDDTKM

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_6|1176_bp
atgaatgcttccagtcggaatgtgtttgacacgttgatcagggtgttgacagaaagtatg
ttcaaacatcttcggaaatgggtcgtcactcgcttttttgggcattctcggcaaagagca
aggctagtctccaaagatggaaggtgcaacatagaatttggcaatgtggaggcacagtca
aggtttatattctttgtggacatctggacaacggtacttgacctcaagtggagatacaaa
atgaccattttcatcacagccttcttggggagttggtttttctttggtctcctgtggtat
gcagtagcgtacattcacaaagacctcccggaattccatccttctgccaatcacactccc
tgtgtggagaatattaatggcttgacctcagcttttctgttttctctggagactcaagtg
accattggatatggattcaggtgtgtgacagaacagtgtgccactgccatttttctgctt
atctttcagtctatacttggagttataatcaattctttcatgtgtggggccatcttagcc
aagatctccaggcccaaaaaacgtgccaagaccattacgttcagcaagaacgcagtgatc
agcaaacggggagggaagctttgcctcctaatccgagtggctaatctcaggaagagcctt
cttattggcagtcacatttatggaaagcttctgaagaccacagtcactcctgaaggagag
accattattttggaccagatcaatatcaactttgtagttgacgctgggaatgaaaattta
ttcttcatctccccattgacaatttaccatgtcattgatcacaacagccctttcttccac
atggcagcggagacccttctccagcaggactttgaattagtggtgtttttagatggcaca
gtggagtccaccagtgctacctgccaagtccggacatcctatgtcccagaggaggtgctt
tggggctaccgttttgctcccatagtatccaagacaaaggaagggaaataccgagtggat
ttccataactttagcaagacagtggaagtggagacccctcactgtgccatgtgcctttat
aatgagaaagatgttagagccaggatgaagagaggctatgacaaccccaacttcatcttg
tcagaagtcaatgaaacagatgacaccaaaatgtaa

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_7|170_aa
MKDLVCDAEELGQCPEGGENRGYCVSRPLGPADVGYKAHPRQGALLLLTCPLALGGVRDF
TLELPTQDRNQTPFSDLQSPEADTRIGQEQFKTFAGGRSWEVSRAVSCSERAPGWAVPGN
EDGGMLNASKKSPSEKTPAFAEGQLYGMEQRVTEAAGSAPSGSRAFPEST

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_7|513_bp
atgaaggacctagtatgtgatgctgaggaacttgggcagtgtccggaaggtggtgagaac
cggggctattgcgtctccaggccccttggtccagctgatgtgggttacaaggcccacccg
cgccagggggcgctgctgctgctgacctgccctctggcactgggaggtgtgagggacttc
accctggagctgccaacccaggatcgtaaccaaacaccgttctcagacctgcagagccca
gaggcagacacgaggattggtcaagagcagttcaagacatttgctggaggacgcagctgg
gaagtctcccgggcagtgtcctgttctgagagggctcctgggtgggctgtgcccggtaat
gaggatgggggcatgctaaatgccagcaagaagagccccagtgagaagactccagcattt
gctgaagggcagctctatggcatggaacaaagggtcaccgaagctgctggctctgctccc
tctggctccagggctttcccagaaagcacttga

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_8|272_aa
MCLPQVDRVERPVDSIALSWEQNLPGLCTFNPAGSQLSAVRRKAFTLQFPGDCSQDAWVS
TTDSSAEGLLRGNFPPEKHRNETAMSPSHTGKGSSLREVELLDKRAEALLVMSTSHEDQA
GSGAWGHQKGEGACPGSCLSYGFHELKNTLWSSSVLKAGRVSSHRRPAAAARRGEIVRGE
QRARGQLAWVLSLDLLPLQLADQAPGPSLHGGNQSRRAGDAAPRLWLPRLPKGIPPSAPS
LSGNGEMLPTVRLAHRGATEQPRRGSEPRFLP

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_8|819_bp
atgtgtctcccccaggtagaccgcgtggagcgcccagtggactcgatagcgctgtcctgg
gaacagaaccttcccggactgtgcacttttaaccctgcaggttctcagctgtctgccgtc
agaaggaaagcattcacactccagttcccaggagactgcagccaggacgcttgggtttcc
accacggattcctctgctgaggggctgctccgcggtaactttcctcccgagaagcacagg
aatgaaacggcgatgagcccctctcacacagggaagggctccagcctgcgggaggtggag
ctgctggataaaagagctgaggcccttctggtgatgtccaccagccacgaggatcaggcg
gggtcaggggcctggggacaccagaaaggggagggtgcctgccctggcagctgcctttcc
tacggcttccacgaattaaagaacacactctggtcatcatctgtcctcaaggcagggcgc
gtttccagccatcgccgcccagccgccgccgcacgccggggagagatcgtccggggtgag
cagcgagcccggggacagctagcctgggtcctgtccctggacctactccccctgcagctg
gcggatcaggcccccggaccctcactccacggcgggaatcagagccgtcgggcgggggat
gcagcgcccagactgtggctcccccgccttcccaaaggaatccccccatctgctccatcc
ctctcgggaaacggcgaaatgctgccaaccgtccgcttagcgcaccgcggagcgactgag
cagccccgccgaggctccgagccaagatttctgccctaa

>gi568815587f:128658113_128910985|GENSCAN_predicted_peptide_9|210_aa
MLTRLVLSAHLSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTAGQDVHAIVTRTCES
VLSSAVYTHGCGCVSGEGIVEGTAEVCEMSGMRPQRSLIAKLLSTLRKGAAGKADEASQD
SGIVDTETPTVKFYVIQTLGDLAIGLPGGPGFWLHNKGGWLVLNGATEENKNKTQKDSFV
ADDYLNSYLMTDPHLETLPALNDLSIAHTQ

>gi568815587f:128658113_128910985|GENSCAN_predicted_CDS_9|633_bp
atgttgacgcggctggtcctcagtgcacacctgagtagcacgacctctccgccctggacg
cacgctgccatcagctgggagctggacaacgtgctgatgcctagtcccagaatctggccc
caggtgactccaacagctgggcaggatgtgcatgccatagtaaccagaacctgtgagtct
gtgctgagctctgccgtctacacccacggctgtggctgtgtgagcggtgagggcatcgtg
gaagggactgcagaggtgtgcgagatgagtggaatgaggccccagcgttctctgattgcc
aagctgttaagcactctgcggaagggagctgctgggaaggcggacgaggcatctcaggat
tctggcattgtagacacagaaacaccgactgtgaagttttatgtaatacaaacactggga
gatttagcaataggcctgccaggcggccctggcttctggctgcacaacaaaggggggtgg
ctggtgctgaatggggcaacagaagaaaataaaaacaaaacacagaaagattccttcgtg
gctgacgactatcttaacagttatctgatgacagatccgcacttggaaacactgccagcc
ctcaatgacctgtctatagctcatacacagtga