GENSCAN 1.0	Date run:  3-Nov-116	Time: 17:24:53

Sequence gi568815595r:49260212_49475589 : 215378 bp : 48.52% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1515   1626  112  0  1   57   32   142 0.098   5.88
 1.02 Term +  16981  17193  213  0  0  104   55   116 0.159   7.13
 1.03 PlyA +  17381  17386    6                               1.05

 2.14 PlyA -  17937  17932    6                              -0.45
 2.13 Term -  18240  18082  159  0  0   90   38   115 0.992   4.64
 2.12 Intr -  18691  18603   89  2  2   18   89    87 0.993   1.49
 2.11 Intr -  20636  20533  104  1  2   74   93   132 0.995  12.12
 2.10 Intr -  23925  23776  150  2  0   84   94   174 0.999  16.88
 2.09 Intr -  24373  24255  119  1  2   54   80   205 0.999  15.56
 2.08 Intr -  24708  24638   71  1  2   85   92    67 0.987   5.70
 2.07 Intr -  26114  25887  228  0  0   48   67   219 0.976  13.64
 2.06 Intr -  32387  32299   89  1  2   61  113    93 0.953   8.71
 2.05 Intr -  37753  37659   95  1  2   70   67    49 0.943  -0.24
 2.04 Intr -  38424  38341   84  0  0  125   73   106 0.999  12.82
 2.03 Intr -  42331  42173  159  1  0   68   68   236 0.989  19.78
 2.02 Intr -  45634  45504  131  2  2   41   56   114 0.084   3.91
 2.01 Init -  57236  56894  343  2  1   79    6   689 0.035  57.20
 2.00 Prom -  62310  62271   40                              -7.96

 3.08 PlyA -  63361  63356    6                               1.05
 3.07 Term -  64461  64326  136  2  1   90   43    55 0.772  -1.31
 3.06 Intr -  64552  64491   62  1  2  106  106    -1 0.872   1.03
 3.05 Intr -  64828  64683  146  2  2   65   91   226 0.996  20.60
 3.04 Intr -  65634  65508  127  0  1   92   77   105 0.996  10.05
 3.03 Intr -  67605  67475  131  1  2  113   87    99 0.999  12.71
 3.02 Intr -  75385  75258  128  0  2  103   80    77 0.951   8.72
 3.01 Init -  79813  79713  101  1  2   89   77    84 0.990   7.13
 3.00 Prom -  89990  89951   40                              -6.76

 4.04 PlyA -  90521  90516    6                               1.05
 4.03 Term -  97536  97177  360  0  0   95   49   622 0.999  53.54
 4.02 Intr -  97893  97816   78  0  0   16   85   130 0.974   5.25
 4.01 Init -  98067  97954  114  0  0   66   74   244 0.946  19.01
 4.00 Prom -  99337  99298   40                              -7.16

 5.05 PlyA -  99421  99416    6                               1.05
 5.04 Term - 102415 102279  137  2  2   85   39   167 0.999   9.68
 5.03 Intr - 108337 108217  121  1  1  109   95    83 0.999  11.17
 5.02 Intr - 115405 115223  183  1  0  109  109   246 0.445  28.78
 5.01 Init - 132051 131986   66  0  0   71   75    35 0.160  -0.40
 5.00 Prom - 138713 138674   40                              -3.76

 6.00 Prom + 149196 149235   40                              -6.86
 6.01 Init + 152216 152429  214  1  1   96   94   318 0.997  30.11
 6.02 Intr + 154609 154754  146  2  2  111    7   104 0.530   4.60
 6.03 Term + 154828 154842   15  0  0   82   49    11 0.416  -5.16
 6.04 PlyA + 155304 155309    6                              -0.45

 7.14 PlyA - 155319 155314    6                              -0.45
 7.13 Term - 157507 157329  179  2  2   77   48   194 0.999  12.15
 7.12 Intr - 157762 157607  156  2  0   77   74    95 0.932   6.98
 7.11 Intr - 158940 158760  181  0  1   65   80   146 0.971  10.94
 7.10 Intr - 159182 159049  134  0  2   33   85   187 0.580  13.26
 7.09 Intr - 159577 159499   79  1  1  106  100    53 0.993   7.42
 7.08 Intr - 160131 160000  132  0  0   48   74   146 0.997  10.04
 7.07 Intr - 161361 161281   81  0  0   73   80    57 0.891   3.23
 7.06 Intr - 162060 161893  168  0  0   16   99   187 0.687  12.74
 7.05 Intr - 162350 162150  201  2  0   70   75    86 0.516   4.98
 7.04 Intr - 164842 164738  105  1  0   52   95    74 0.904   4.91
 7.03 Intr - 165785 165672  114  2  0   46  115   113 0.940  10.44
 7.02 Intr - 166217 166041  177  2  0   56   76    85 0.541   4.22
 7.01 Init - 169028 168897  132  2  0   92   83   101 0.967  10.46
 7.00 Prom - 183625 183586   40                              -4.36

 8.03 PlyA - 184447 184442    6                               1.05
 8.02 Term - 199261 199240   22  0  1  122   55    11 0.092  -1.02
 8.01 Init - 210692 210058  635  2  2   78   81   344 0.275  25.52

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  11234  10969  266  0  2   53   49   242 0.957  12.47
S.002 Init -  13892  13838   55  2  1   75   97    12 0.862   2.25
S.003 Intr -  45677  45504  174  2  0   61   56   129 0.880   7.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_1|108_aa
XFGEGDTAQASKHVPGTINIFGSSDVPGTVCGYPGADVRSDADPSNGHRMRVPRAGPKPP
RIRLKVRQKIPDPYVRFLKALPTRSGWPRGGSGDGAFEWGPREESWQG

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_1|327_bp
nngtttggtgagggtgacacagcccaagcatccaagcatgtccctggaacaatcaacatc
tttggctcctcagatgttcctggaactgtatgtggctacccaggggcagatgtgcgcagt
gacgccgacccatccaacggtcatcgcatgcgcgtgccccgcgcaggccccaaaccccca
cggattaggttgaaggtcagacaaaaaatcccggacccatacgtccggttccttaaggcc
ttgcccacacgcagcggctggccccgcggtgggagtggggacggggctttcgaatggggg
ccccgggaagagtcttggcagggatga

>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_2|606_aa
MALQNYDNKLVKCIEELCQKQEELCWQIQQEEDKKQRLQNEVRQLTEKLACVNEKLARVN
ENLARKIASCSKFYQTIAETEATYLKMLESSQTLLSVLKREAGNLTKATASDQKNEYEAE
INRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELL
AFLLDGLHEDLNRVKKKPYLELKDANGRPDAYRVTVPLMGAVSDLCEALSRLSGIAAENM
VVADVYNHRFHKIFQMDEGLNHIMPRDDIFVRYVKQPLPDEFGSSPLEPGACNGSRNSCE
GEDEEEMEHQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSYGT
ADINSLAADGKLLKLNSRSTLAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVA
LRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDK
LDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYF
DDSNVSLASEDQIVTKAAYVLFYQRRDDEFYKTPSLSSSGSSDGGTRPSSSQQGFGDDEA
CSMDTN

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_2|1821_bp
atggcgctgcagaactacgacaacaagctggtcaaatgcatagaggagctatgccagaag
caggaggagctgtgctggcagatccagcaggaggaggacaagaaacagcggctgcagaat
gaggtgaggcagctgacagagaagctggcctgcgtcaacgagaagctggcccgcgtcaac
gagaacctggcacgcaagattgcctcttgcagtaagttctaccagaccatcgcggagacg
gaggccacctacctcaagatgctggagagctcccagactttgctcagtgtcctgaagagg
gaagctgggaacctgaccaaggctacagcctcagaccagaaaaatgagtatgaagccgaa
atcaacagagacaaccctctggggatgaaaggggaaattgcagaagcctatgctgaactc
attaagcagatgtggtctggaagggacgcccatgtggcacctcgcatgttcaaaactcaa
gtaggacgttttgctcctcaattttctggctaccagcaacaagattctcaggagctgctg
gcctttcttctagatggattgcatgaagatctgaaccgggtaaagaaaaagccctacttg
gagctgaaggatgccaatgggcggccagatgcgtaccgtgtgactgtgccgctgatgggg
gctgtgtccgacctgtgcgaggctctctccaggctgtctggcattgctgcagaaaatatg
gtggtcgcagatgtgtataatcaccgattccacaaaattttccaaatggatgaaggttta
aaccacatcatgcctcgggatgacattttcgtccgctatgtgaaacagcctttacctgat
gagtttggcagctcacccttggagccaggggcctgcaatggctccaggaacagctgtgaa
ggagaagatgaggaagaaatggagcatcaggaagaaggcaaagagcagctttcagaaaca
gaaggcagtggggaagatgagccaggaaatgaccccagtgagaccacccaaaagaagatc
aaaggccagccctgcccaaaaaggctttttaccttcagtcttgtgaactcctatggaaca
gctgacataaattcacttgcagctgatggaaaactacttaaactcaactctcgatctaca
ctggccatggattgggacagtgaaactcggagactttactatgatgagcaagaatctgag
gcctacgagaagcatgtgagcatgttgcagcctcagaagaagaagaagaccacagtggcc
ctgagagactgcatcgagctcttcaccaccatggagacccttggggagcatgacccctgg
tactgtcccaactgtaagaagcatcaacaggccacaaaaaagtttgacctatggtccttg
cccaagatcctggtggtccacctcaaacgtttctcctacaacagatactggagggataag
ctcgacacagtcgtagaattcccaatcagagggctgaacatgtccgagtttgtctgtaac
ctgtcagcaaggccttatgtgtacgacctcattgccgtgtccaatcattatggagccatg
ggggttggccactacactgcatatgcgaagaacaaactgaatggtaaatggtattacttt
gatgatagcaacgtgtccctggcctctgaggatcagatagtgactaaagcagcttatgtg
ctattttaccaacgtcgagatgatgaattttataagacaccttcacttagcagttctggt
tcctctgatggagggacacgaccaagcagctctcagcagggctttggggatgatgaggct
tgcagcatggacaccaactaa

>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_3|276_aa
MAEGGGCRERPDAETQKSELGPLMRTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG
EHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRK
VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERE
TRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKLTCAKETV
FPKAVLVLRKIVLIQMNNAYFVYPEFMLLDEDRGFW

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_3|831_bp
atggcggaaggtggaggctgccgtgagcgaccggatgcggagactcagaagtccgagctt
ggacccttaatgaggaccacactccaacgcggggcgcagtggtatcttattgacagccgg
tggttcaagcagtggaagaagtatgtgggctttgacagctgggacatgtacaatgtgggt
gaacataacctatttcctggcccaatagacaactctgggctattttcagatcctgagagt
cagaccttgaaagaacacttaattgatgaattggactatgtattggtccctaccgaggcg
tggaataaactactaaactggtacggctgtgtagaaggccagcaacccatcgtcagaaaa
gttgtggagcatggcctgtttgtcaagcactgcaaagtcgaggtgtatttgctggaactg
aagctctgtgagaacagtgaccccaccaatgtgctgagttgccatttcagcaaggcagac
accattgcaaccatcgagaaagagatgcggaagctattcaacatccctgcggagcgtgaa
acacggctctggaacaaatacatgagcaacacctacgagcagttgagcaagctagacaac
actgtccaggatgctgggctataccagggtcaggtgctagtaattgagcctcaaaatgaa
gatggcacatggcccaggcagaccttgcagtcaaagctcacatgtgcaaaagagacagtc
tttcctaaggcagtacttgtactaagaaaaattgttctgattcagatgaacaatgcctat
tttgtatatccagagttcatgcttctggatgaagaccgtggcttttggtag

>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_4|183_aa
MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKMNELQRRLGPRGLVVLGFPCNQ
FGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDA
TALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGP
SCA

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_4|552_bp
atgtgtgctgctcggctagcggcggcggcggcggcggcccagtcggtgtatgccttctcg
gcgcgcccgctggccggcggggagcctgtgagcctgggctccctgcggggcaagatgaac
gagctgcagcggcgcctcggaccccggggcctggtggtgctcggcttcccgtgcaaccag
tttgggcatcaggagaacgccaagaacgaagagattctgaattccctcaagtacgtccgg
cctggtggtgggttcgagcccaacttcatgctcttcgagaagtgcgaggtgaacggtgcg
ggggcgcaccctctcttcgccttcctgcgggaggccctgccagctcccagcgacgacgcc
accgcgcttatgaccgaccccaagctcatcacctggtctccggtgtgtcgcaacgatgtt
gcctggaactttgagaagttcctggtgggccctgacggtgtgcccctacgcaggtacagc
cgccgcttccagaccattgacatcgagcctgacatcgaagccctgctgtctcaagggccc
agctgtgcctag

>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_5|168_aa
MRSHCIAQAGLELLASDILGLQVISVFCVSAMAAIRKKLVIVGDGACGKTCLLIVFSKDQ
FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP
DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQA

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_5|507_bp
atgaggtctcactgtattgcccaggctggtctcgagctcctggcctcagacatcctggga
ttacaggtaatatctgtgttttgtgtttcagcaatggctgccatccggaagaaactggtg
attgttggtgatggagcctgtggaaagacatgcttgctcatagtcttcagcaaggaccag
ttcccagaggtgtatgtgcccacagtgtttgagaactatgtggcagatatcgaggtggat
ggaaagcaggtagagttggctttgtgggacacagctgggcaggaagattatgatcgcctg
aggcccctctcctacccagataccgatgttatactgatgtgtttttccatcgacagccct
gatagtttagaaaacatcccagaaaagtggaccccagaagtcaagcatttctgtcccaac
gtgcccatcatcctggttgggaataagaaggatcttcggaatgatgagcacacaaggcgg
gagctagccaagatgaagcaggcatga

>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_6|124_aa
MAESWSGQALQALPATVLGALGSEFLREWEAQDMRVTLFKLLLLWLVLSLLGIQLAWGFY
GNTVTGLYHRPGKWQQTNLSKPTENKGRQQRVSKGITGSAGFYTGFCYSPDLRDNCRGFR
ALGK

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_6|375_bp
atggcggagtcctggtctgggcaggccttgcaggctctgccggccacggtgctgggcgcg
ctgggcagcgagttcttgcgggagtgggaggcgcaggacatgcgcgtgaccctcttcaag
ctgctgctgctgtggttggtgttaagtctcctgggcatccagctggcgtgggggttctac
gggaatacagtgaccgggttgtatcaccgtccagggaaatggcagcaaacgaacctctca
aaacccacagagaataagggaaggcagcagagggtctccaagggcatcactgggtctgct
ggcttctacactgggttctgctactccccagacctcagggacaactgccgggggttcagg
gcactgggcaagtga

>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_7|612_aa
MSRVLVPCHVKGSVALQVGDVRTSQGRPGVLVIDVTFPSVAPFELQEITFKNYYTAFLSI
RVRQYTSAHTPAKWVTCLRDYCLMPDPHSEEGAQEYVSLFKHQMLCDMARISELRLILRQ
PSPLWLSFTVEELQIYQQGPKGLPDPSRVSSEVQQMWALTEMIRASHTSARIGRFDILCS
GERPVRAEAWTTSPGVPGSVVASVRRLHSLQATMQRAVSVVARLGFRLQAFPPALCRPLS
CAQEVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQT
KILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAG
CWEKDLALMQDKVRELQNQGRDVGLEVLDNALLALQAQVLQAGVADDLRKLPFMTSAVME
VFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPEVKLAGLAARDSLRLEAGLC
LYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMR
AHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSK
MPFVPTNYYTLK

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_7|1839_bp
atgtcccgcgttttggtgccttgccatgtgaaaggctccgtagccctccaggtgggcgac
gtgcggacctcccaaggccggcctggcgtgctggtcatcgatgtcaccttccccagcgtc
gctcccttcgagttgcaggaaatcacgtttaagaattactacacagcttttttgagcatc
cgtgtccgtcagtacacctcagcacacacacctgccaagtgggtgacctgcctgcgggac
tactgcctaatgcctgacccacacagtgaggagggagcccaggagtatgtatcgctgttc
aagcatcagatgctgtgtgacatggctagaatatcggagctacgcctgattctgcggcag
ccatcaccactgtggctgtctttcacagtggaggagctgcagatctatcagcagggacca
aagggtctcccagaccccagcagggtatcctccgaggtgcagcagatgtgggcactgaca
gagatgatccgggccagtcacacctccgcaaggatcggccgctttgatatcctttgctcc
ggagagagacctgtccgagcagaggcctggactacatctcccggcgtgcctggcagtgtg
gtggcctctgtgcgccgtctgcactcgttgcaggcgacgatgcagagggctgtaagtgtg
gtggcccgtctgggctttcgcctgcaggcattccccccggccttgtgtcgtccacttagt
tgcgcacaggaggtgctccgcaggacaccgctctatgacttccacctggcccacggcggg
aaaatggtggcgtttgcgggttggagtctgccagtgcagtaccgggacagtcacactgac
tcgcacctgcacacacgccagcactgctcgctctttgacgtgtctcatatgctgcagacc
aagatacttggtagtgaccgggtgaagctgatggagagtctagtggttggagacattgca
gagctaagaccaaaccaggggacactgtcgctgtttaccaacgaggctggaggcatctta
gatgacttgattgtaaccaatacttctgagggccacctgtatgtggtgtccaacgctggc
tgctgggagaaagatttggccctcatgcaggacaaggtcagggagcttcagaaccagggc
agagatgtgggcctggaggtgttggataatgccctgctagctctgcaagcccaggtacta
caggccggcgtggcagatgacctgaggaaactgcccttcatgaccagtgctgtgatggag
gtgtttggcgtgtctggctgccgcgtgacccgctgtggctacacaggagaggatggtgtg
gagatctcggtgccggtagcgggggcagttcacctggcaacagctattctgaaaaaccca
gaggtgaagctggcagggctggcagccagggacagcctgcgcctggaggcaggcctctgc
ctgtatgggaatgacattgatgaacacactacacctgtggagggcagcctcagttggaca
ctggggaagcgccgccgagctgctatggacttccctggagccaaggtcattgttccccag
ctgaagggcagggtgcagcggaggcgtgtggggttgatgtgtgagggggcccccatgcgg
gcacacagtcccatcctgaacatggagggtaccaagattggtactgtgactagtggctgc
ccctccccctctctgaagaagaatgtggcgatgggttatgtgccctgcgagtacagtcgt
ccagggacaatgctgctggtagaggtgcggcggaagcagcagatggctgtagtcagcaag
atgccctttgtgcccacaaactactataccctcaagtga

>gi568815595r:49260212_49475589|GENSCAN_predicted_peptide_8|218_aa
MTEPTKALSSSDRAVAAAVPFPASSGARLPTVGIRPNWATTPIGSQGGGPQAAHDRGQGA
GSTFPGARAELRPGPSPRRAARALQPNAPSLCLRDPEQRGGSARAAPPPHPQGRPRPCPR
PGPNSEQQQVFRGRLSRQQGWGPKQPGTADRAGGALTQRRREDRGRCSLLLAPGRRHRRS
PGIRREAAAAATAKPKRRERRAAAFARARTGRCSQTAG

>gi568815595r:49260212_49475589|GENSCAN_predicted_CDS_8|657_bp
atgacggaacccaccaaggctctgagcagctctgacagagcagtggcggcagcggtgccc
ttccctgcctctagcggggctcgactccccacagtcggaatccggcccaactgggccaca
acccctattggaagccagggaggcggcccgcaggcggctcacgaccgcggccaaggcgca
ggctccacgttcccgggagcgcgggccgagctaaggcctggcccatcgccgcggcgcgcg
gcccgggccttgcagccgaacgctccgagcctttgcctgcgggacccagagcaaaggggc
ggctccgcccgggcggcaccgcctcctcacccacaaggacgtccgcggccgtgtccccgc
cccgggccgaacagcgagcagcagcaggtgttccgcggaaggctcagccggcagcaggga
tgggggcccaagcagccaggcacagcggatagggcgggcggtgcactcacccagcgccgg
cgggaggaccgcggcaggtgttcgctcctcctggccccaggacgccgccaccgccgctcc
ccggggattcggcgcgaagctgccgccgccgccaccgccaagcctaagaggcgcgagcgc
cgcgccgcagccttcgcgcgagcacgtaccgggcgctgttcccagacagctggatga