Result of FASTA (omim) for pF1KB5439
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5439, 207 aa
  1>>>pF1KB5439 207 - 207 aa - 207 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1227+/-0.000456; mu= 14.8787+/- 0.029
 mean_var=90.7825+/-18.790, 0's: 0 Z-trim(112.2): 440  B-trim: 1021 in 2/48
 Lambda= 0.134609
 statistics sampled from 20542 (21065) to 20542 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.247), width:  16
 Scan time:  5.590

The best scores are:                                      opt bits E(85289)
NP_004628 (OMIM: 600882,602298) ras-related protei ( 207) 1364 274.9 6.3e-74
NP_057454 (OMIM: 300285) ras-related protein Rab-9 ( 201)  696 145.2   7e-35
NP_001182257 (OMIM: 300284) ras-related protein Ra ( 201)  688 143.6   2e-34
NP_004242 (OMIM: 300284) ras-related protein Rab-9 ( 201)  688 143.6   2e-34
XP_016885453 (OMIM: 300284) PREDICTED: ras-related ( 201)  688 143.6   2e-34
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216)  437 94.9   1e-19
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216)  437 94.9   1e-19
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216)  437 94.9   1e-19
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216)  437 94.9   1e-19
NP_001238968 (OMIM: 604037) ras-related protein Ra ( 249)  437 95.0 1.1e-19
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208)  434 94.3 1.5e-19
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215)  430 93.6 2.6e-19
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215)  430 93.6 2.6e-19
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215)  430 93.6 2.6e-19
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215)  430 93.6 2.6e-19
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207)  429 93.4 2.9e-19
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208)  427 93.0 3.8e-19
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203)  426 92.8 4.3e-19
NP_004153 (OMIM: 179512) ras-related protein Rab-5 ( 215)  426 92.8 4.4e-19
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208)  425 92.6   5e-19
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201)  424 92.4 5.5e-19
NP_006859 (OMIM: 605694) ras-related protein Rab-3 ( 195)  423 92.2 6.2e-19
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205)  421 91.8 8.4e-19
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207)  417 91.0 1.5e-18
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216)  417 91.0 1.5e-18
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203)  416 90.8 1.6e-18
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203)  416 90.8 1.6e-18
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203)  416 90.8 1.6e-18
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203)  416 90.8 1.6e-18
NP_071732 (OMIM: 606281) ras-related protein Rab-3 ( 211)  416 90.8 1.7e-18
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216)  416 90.8 1.7e-18
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218)  415 90.7   2e-18
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200)  414 90.4 2.1e-18
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212)  411 89.9 3.3e-18
NP_899050 (OMIM: 201000,606144) ras-related protei ( 237)  410 89.7 4.1e-18
NP_001265596 (OMIM: 201000,606144) ras-related pro ( 237)  410 89.7 4.1e-18
NP_001265597 (OMIM: 201000,606144) ras-related pro ( 237)  410 89.7 4.1e-18
NP_001265595 (OMIM: 201000,606144) ras-related pro ( 237)  410 89.7 4.1e-18
NP_057361 (OMIM: 201000,606144) ras-related protei ( 237)  410 89.7 4.1e-18
XP_011511195 (OMIM: 615852) PREDICTED: ras-related ( 195)  407 89.1 5.4e-18
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206)  404 88.5 8.3e-18
XP_005245628 (OMIM: 603949) PREDICTED: ras-related ( 203)  403 88.3 9.4e-18
XP_005245626 (OMIM: 603949) PREDICTED: ras-related ( 203)  403 88.3 9.4e-18
NP_001129134 (OMIM: 603949) ras-related protein Ra ( 203)  403 88.3 9.4e-18
NP_003920 (OMIM: 603949) ras-related protein Rab-7 ( 203)  403 88.3 9.4e-18
XP_005245627 (OMIM: 603949) PREDICTED: ras-related ( 203)  403 88.3 9.4e-18
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215)  403 88.3 9.8e-18
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218)  402 88.1 1.1e-17
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225)  401 88.0 1.3e-17
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227)  401 88.0 1.3e-17


>>NP_004628 (OMIM: 600882,602298) ras-related protein Ra  (207 aa)
 initn: 1364 init1: 1364 opt: 1364  Z-score: 1448.2  bits: 274.9 E(85289): 6.3e-74
Smith-Waterman score: 1364; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KB5 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
              130       140       150       160       170       180

              190       200       
pF1KB5 ELYNEFPEPIKLDKNDRAKASAESCSC
       :::::::::::::::::::::::::::
NP_004 ELYNEFPEPIKLDKNDRAKASAESCSC
              190       200       

>>NP_057454 (OMIM: 300285) ras-related protein Rab-9B [H  (201 aa)
 initn: 710 init1: 679 opt: 696  Z-score: 747.3  bits: 145.2 E(85289): 7e-35
Smith-Waterman score: 696; 52.2% identity (80.8% similar) in 203 aa overlap (3-205:2-201)

               10        20        30        40        50        60
pF1KB5 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
         : :..:::::.:::.::::.::::.::..::..:   :::..::.... :: :.::.:
NP_057  MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQ
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
       ::::::::::.:: . ::::::::.:.:.:   ..:..: .:. ::.  :. .:::.:::
NP_057 IWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPF
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
       ::::::.: :.:::.:..::.::. ... ::.:::::.  ::  ::.  .:..:  : ..
NP_057 VVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQL
     120       130       140       150       160       170         

              190       200       
pF1KB5 ELYNEFPEPIKLDKNDRAKASAESCSC
       : .  . . :  : :. .::..  :  
NP_057 E-HCMLGHTI--DLNSGSKAGSSCC  
     180          190       200   

>>NP_001182257 (OMIM: 300284) ras-related protein Rab-9A  (201 aa)
 initn: 675 init1: 675 opt: 688  Z-score: 738.9  bits: 143.6 E(85289): 2e-34
Smith-Waterman score: 688; 50.7% identity (79.6% similar) in 201 aa overlap (5-205:4-201)

               10        20        30        40        50        60
pF1KB5 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
           :. :.:::.:::.::::.::::.::..::..:   :::..::.:.. :: ..::::
NP_001  MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
       ::::::::::.:: . ::::.:::.:.:.:   ..:..:..:. ::.  :. ..::.:::
NP_001 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
       :.::::::. .:::.:..::::: .... ::::::::.: ::  ::.  .: .:  : . 
NP_001 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRS
     120       130       140       150       160       170         

              190       200       
pF1KB5 ELYNEFPEPIKLDKNDRAKASAESCSC
       .   .  . ..: .  . : :.  :  
NP_001 DHLIQ-TDTVNLHR--KPKPSSSCC  
     180        190         200   

>>NP_004242 (OMIM: 300284) ras-related protein Rab-9A [H  (201 aa)
 initn: 675 init1: 675 opt: 688  Z-score: 738.9  bits: 143.6 E(85289): 2e-34
Smith-Waterman score: 688; 50.7% identity (79.6% similar) in 201 aa overlap (5-205:4-201)

               10        20        30        40        50        60
pF1KB5 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
           :. :.:::.:::.::::.::::.::..::..:   :::..::.:.. :: ..::::
NP_004  MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
       ::::::::::.:: . ::::.:::.:.:.:   ..:..:..:. ::.  :. ..::.:::
NP_004 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
       :.::::::. .:::.:..::::: .... ::::::::.: ::  ::.  .: .:  : . 
NP_004 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRS
     120       130       140       150       160       170         

              190       200       
pF1KB5 ELYNEFPEPIKLDKNDRAKASAESCSC
       .   .  . ..: .  . : :.  :  
NP_004 DHLIQ-TDTVNLHR--KPKPSSSCC  
     180        190         200   

>>XP_016885453 (OMIM: 300284) PREDICTED: ras-related pro  (201 aa)
 initn: 675 init1: 675 opt: 688  Z-score: 738.9  bits: 143.6 E(85289): 2e-34
Smith-Waterman score: 688; 50.7% identity (79.6% similar) in 201 aa overlap (5-205:4-201)

               10        20        30        40        50        60
pF1KB5 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ
           :. :.:::.:::.::::.::::.::..::..:   :::..::.:.. :: ..::::
XP_016  MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF
       ::::::::::.:: . ::::.:::.:.:.:   ..:..:..:. ::.  :. ..::.:::
XP_016 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV
       :.::::::. .:::.:..::::: .... ::::::::.: ::  ::.  .: .:  : . 
XP_016 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRS
     120       130       140       150       160       170         

              190       200       
pF1KB5 ELYNEFPEPIKLDKNDRAKASAESCSC
       .   .  . ..: .  . : :.  :  
XP_016 DHLIQ-TDTVNLHR--KPKPSSSCC  
     180        190         200   

>>NP_004574 (OMIM: 604037) ras-related protein Rab-5C is  (216 aa)
 initn: 423 init1: 329 opt: 437  Z-score: 475.0  bits: 94.9 E(85289): 1e-19
Smith-Waterman score: 437; 39.7% identity (68.6% similar) in 204 aa overlap (9-206:22-215)

                            10        20        30        40       
pF1KB5              MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT
                            .:...::.:.:::.::. ..:. .: .  ..:::: :::
NP_004 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB5 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL
       . : .::  : ..:::::::::..::.  .::::.  ..:.:.:  .::    .:  :. 
NP_004 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
               70        80        90       100       110       120

       110       120       130        140       150       160      
pF1KB5 IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF
        ::::    :. ... ::: :: . : :  ..:::.  . :.. ..::::: :.::.. :
NP_004 RQASP----NIVIALAGNKADLASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIF
                  130       140       150        160       170     

        170       180            190       200       
pF1KB5 QTIARNALKQETEVELYNEFPEP-----IKLDKNDRAKASAESCSC
       ..::..  :.: .    :    :     . :..:. :. : . :: 
NP_004 MAIAKKLPKNEPQ----NATGAPGRNRGVDLQENNPASRS-QCCSN
         180           190       200       210       

>>XP_011523392 (OMIM: 604037) PREDICTED: ras-related pro  (216 aa)
 initn: 423 init1: 329 opt: 437  Z-score: 475.0  bits: 94.9 E(85289): 1e-19
Smith-Waterman score: 437; 39.7% identity (68.6% similar) in 204 aa overlap (9-206:22-215)

                            10        20        30        40       
pF1KB5              MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT
                            .:...::.:.:::.::. ..:. .: .  ..:::: :::
XP_011 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB5 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL
       . : .::  : ..:::::::::..::.  .::::.  ..:.:.:  .::    .:  :. 
XP_011 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
               70        80        90       100       110       120

       110       120       130        140       150       160      
pF1KB5 IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF
        ::::    :. ... ::: :: . : :  ..:::.  . :.. ..::::: :.::.. :
XP_011 RQASP----NIVIALAGNKADLASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIF
                  130       140       150        160       170     

        170       180            190       200       
pF1KB5 QTIARNALKQETEVELYNEFPEP-----IKLDKNDRAKASAESCSC
       ..::..  :.: .    :    :     . :..:. :. : . :: 
XP_011 MAIAKKLPKNEPQ----NATGAPGRNRGVDLQENNPASRS-QCCSN
         180           190       200       210       

>>XP_011523393 (OMIM: 604037) PREDICTED: ras-related pro  (216 aa)
 initn: 423 init1: 329 opt: 437  Z-score: 475.0  bits: 94.9 E(85289): 1e-19
Smith-Waterman score: 437; 39.7% identity (68.6% similar) in 204 aa overlap (9-206:22-215)

                            10        20        30        40       
pF1KB5              MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT
                            .:...::.:.:::.::. ..:. .: .  ..:::: :::
XP_011 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB5 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL
       . : .::  : ..:::::::::..::.  .::::.  ..:.:.:  .::    .:  :. 
XP_011 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
               70        80        90       100       110       120

       110       120       130        140       150       160      
pF1KB5 IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF
        ::::    :. ... ::: :: . : :  ..:::.  . :.. ..::::: :.::.. :
XP_011 RQASP----NIVIALAGNKADLASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIF
                  130       140       150        160       170     

        170       180            190       200       
pF1KB5 QTIARNALKQETEVELYNEFPEP-----IKLDKNDRAKASAESCSC
       ..::..  :.: .    :    :     . :..:. :. : . :: 
XP_011 MAIAKKLPKNEPQ----NATGAPGRNRGVDLQENNPASRS-QCCSN
         180           190       200       210       

>>NP_958842 (OMIM: 604037) ras-related protein Rab-5C is  (216 aa)
 initn: 423 init1: 329 opt: 437  Z-score: 475.0  bits: 94.9 E(85289): 1e-19
Smith-Waterman score: 437; 39.7% identity (68.6% similar) in 204 aa overlap (9-206:22-215)

                            10        20        30        40       
pF1KB5              MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT
                            .:...::.:.:::.::. ..:. .: .  ..:::: :::
NP_958 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
               10        20        30        40        50        60

        50        60        70        80        90       100       
pF1KB5 KEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL
       . : .::  : ..:::::::::..::.  .::::.  ..:.:.:  .::    .:  :. 
NP_958 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
               70        80        90       100       110       120

       110       120       130        140       150       160      
pF1KB5 IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF
        ::::    :. ... ::: :: . : :  ..:::.  . :.. ..::::: :.::.. :
NP_958 RQASP----NIVIALAGNKADLASKRAVEFQEAQAYA-DDNSLLFMETSAKTAMNVNEIF
                  130       140       150        160       170     

        170       180            190       200       
pF1KB5 QTIARNALKQETEVELYNEFPEP-----IKLDKNDRAKASAESCSC
       ..::..  :.: .    :    :     . :..:. :. : . :: 
NP_958 MAIAKKLPKNEPQ----NATGAPGRNRGVDLQENNPASRS-QCCSN
         180           190       200       210       

>>NP_001238968 (OMIM: 604037) ras-related protein Rab-5C  (249 aa)
 initn: 423 init1: 329 opt: 437  Z-score: 474.3  bits: 95.0 E(85289): 1.1e-19
Smith-Waterman score: 437; 39.7% identity (68.6% similar) in 204 aa overlap (9-206:55-248)

                                     10        20        30        
pF1KB5                       MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK
                                     .:...::.:.:::.::. ..:. .: .  .
NP_001 LWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQE
           30        40        50        60        70        80    

       40        50        60        70        80        90        
pF1KB5 ATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT
       .:::: :::. : .::  : ..:::::::::..::.  .::::.  ..:.:.:  .::  
NP_001 STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR
           90       100       110       120       130       140    

      100       110       120       130        140       150       
pF1KB5 LDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAK
         .:  :.  ::::    :. ... ::: :: . : :  ..:::.  . :.. ..:::::
NP_001 AKNWVKELQRQASP----NIVIALAGNKADLASKRAVEFQEAQAYA-DDNSLLFMETSAK
          150           160       170       180        190         

       160       170       180            190       200       
pF1KB5 EAINVEQAFQTIARNALKQETEVELYNEFPEP-----IKLDKNDRAKASAESCSC
        :.::.. :..::..  :.: .    :    :     . :..:. :. : . :: 
NP_001 TAMNVNEIFMAIAKKLPKNEPQ----NATGAPGRNRGVDLQENNPASRS-QCCSN
     200       210       220           230       240          




207 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 17:21:05 2016 done: Thu Nov  3 17:21:06 2016
 Total Scan time:  5.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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