Result of FASTA (omim) for pF1KB5224
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5224, 241 aa
  1>>>pF1KB5224 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5877+/-0.000351; mu= 13.1085+/- 0.022
 mean_var=74.9465+/-14.876, 0's: 0 Z-trim(115.4): 18  B-trim: 522 in 1/50
 Lambda= 0.148149
 statistics sampled from 25742 (25759) to 25742 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.302), width:  16
 Scan time:  6.810

The best scores are:                                      opt bits E(85289)
NP_932070 (OMIM: 601997) BH3-interacting domain de ( 241) 1601 351.2 9.3e-97
NP_001187 (OMIM: 601997) BH3-interacting domain de ( 195) 1271 280.6 1.3e-75
NP_001231496 (OMIM: 601997) BH3-interacting domain ( 195) 1271 280.6 1.3e-75
XP_016884395 (OMIM: 601997) PREDICTED: BH3-interac ( 246) 1248 275.8 4.9e-74
NP_001231501 (OMIM: 601997) BH3-interacting domain (  99)  623 142.0 3.7e-34
NP_001231498 (OMIM: 601997) BH3-interacting domain (  99)  623 142.0 3.7e-34
NP_932071 (OMIM: 601997) BH3-interacting domain de (  99)  623 142.0 3.7e-34
NP_001231499 (OMIM: 601997) BH3-interacting domain (  99)  623 142.0 3.7e-34


>>NP_932070 (OMIM: 601997) BH3-interacting domain death   (241 aa)
 initn: 1601 init1: 1601 opt: 1601  Z-score: 1858.1  bits: 351.2 E(85289): 9.3e-97
Smith-Waterman score: 1601; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB5 MCSGAGVMMARWAARGRAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MCSGAGVMMARWAARGRAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 CITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 DSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 LQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGM
              190       200       210       220       230       240

        
pF1KB5 D
       :
NP_932 D
        

>>NP_001187 (OMIM: 601997) BH3-interacting domain death   (195 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1478.3  bits: 280.6 E(85289): 1.3e-75
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 195 aa overlap (47-241:1-195)

         20        30        40        50        60        70      
pF1KB5 RAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                     ::::::::::::::::::::::::::::::
NP_001                               MDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KB5 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB5 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
              100       110       120       130       140       150

        200       210       220       230       240 
pF1KB5 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
              160       170       180       190     

>>NP_001231496 (OMIM: 601997) BH3-interacting domain dea  (195 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1478.3  bits: 280.6 E(85289): 1.3e-75
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 195 aa overlap (47-241:1-195)

         20        30        40        50        60        70      
pF1KB5 RAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                     ::::::::::::::::::::::::::::::
NP_001                               MDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KB5 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB5 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
              100       110       120       130       140       150

        200       210       220       230       240 
pF1KB5 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
              160       170       180       190     

>>XP_016884395 (OMIM: 601997) PREDICTED: BH3-interacting  (246 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 1450.2  bits: 275.8 E(85289): 4.9e-74
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 192 aa overlap (47-238:1-192)

         20        30        40        50        60        70      
pF1KB5 RAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                     ::::::::::::::::::::::::::::::
XP_016                               MDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KB5 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB5 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
              100       110       120       130       140       150

        200       210       220       230       240                
pF1KB5 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD               
       ::::::::::::::::::::::::::::::::::::::::::                  
XP_016 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNVRTLEVSSFPACRPCPFL
              160       170       180       190       200       210

XP_016 WKVEKPSGAPASDASTRVTGCPARVWFCCCELESCV
              220       230       240      

>>NP_001231501 (OMIM: 601997) BH3-interacting domain dea  (99 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 734.2  bits: 142.0 E(85289): 3.7e-34
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 99 aa overlap (143-241:1-99)

            120       130       140       150       160       170  
pF1KB5 SRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                     ::::::::::::::::::::::::::::::
NP_001                               MDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                             10        20        30

            180       190       200       210       220       230  
pF1KB5 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
               40        50        60        70        80        90

            240 
pF1KB5 RSLARNGMD
       :::::::::
NP_001 RSLARNGMD
                

>>NP_001231498 (OMIM: 601997) BH3-interacting domain dea  (99 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 734.2  bits: 142.0 E(85289): 3.7e-34
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 99 aa overlap (143-241:1-99)

            120       130       140       150       160       170  
pF1KB5 SRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                     ::::::::::::::::::::::::::::::
NP_001                               MDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                             10        20        30

            180       190       200       210       220       230  
pF1KB5 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
               40        50        60        70        80        90

            240 
pF1KB5 RSLARNGMD
       :::::::::
NP_001 RSLARNGMD
                

>>NP_932071 (OMIM: 601997) BH3-interacting domain death   (99 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 734.2  bits: 142.0 E(85289): 3.7e-34
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 99 aa overlap (143-241:1-99)

            120       130       140       150       160       170  
pF1KB5 SRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                     ::::::::::::::::::::::::::::::
NP_932                               MDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                             10        20        30

            180       190       200       210       220       230  
pF1KB5 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
               40        50        60        70        80        90

            240 
pF1KB5 RSLARNGMD
       :::::::::
NP_932 RSLARNGMD
                

>>NP_001231499 (OMIM: 601997) BH3-interacting domain dea  (99 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 734.2  bits: 142.0 E(85289): 3.7e-34
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 99 aa overlap (143-241:1-99)

            120       130       140       150       160       170  
pF1KB5 SRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                     ::::::::::::::::::::::::::::::
NP_001                               MDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                             10        20        30

            180       190       200       210       220       230  
pF1KB5 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
               40        50        60        70        80        90

            240 
pF1KB5 RSLARNGMD
       :::::::::
NP_001 RSLARNGMD
                




241 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:22:15 2016 done: Thu Nov  3 16:22:15 2016
 Total Scan time:  6.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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