GENSCAN 1.0	Date run:  3-Nov-116	Time: 16:14:09

Sequence gi568815596f:20347466_20548053 : 200588 bp : 47.26% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   2798   3329  532  2  1   86   53   148 0.364   4.82
 1.02 PlyA +   6270   6275    6                               1.05

 2.00 Prom +   7837   7876   40                              -5.06
 2.01 Init +  13056  13239  184  2  1   83   67    77 0.470   4.38
 2.02 Intr +  20448  20555  108  1  0   88   63    29 0.167   0.66
 2.03 Intr +  22826  22915   90  0  0   86   61    40 0.035   1.07
 2.04 Intr +  24342  24503  162  1  0   35   63    99 0.049   2.05
 2.05 Intr +  39241  39452  212  2  2   34    3   185 0.017   3.23
 2.06 Intr +  43117  43295  179  0  2   55   70   101 0.021   3.72
 2.07 Intr +  43675  43763   89  1  2   23  121    31 0.047  -0.49
 2.08 Term +  48903  49093  191  1  2   95   37   141 0.550   7.31
 2.09 PlyA +  49752  49757    6                               1.05

 3.05 PlyA -  50128  50123    6                               1.05
 3.04 Term -  51993  51973   21  0  0  104   44    21 0.010  -2.39
 3.03 Intr -  64177  64077  101  2  2   76   88    74 0.775   6.03
 3.02 Intr -  67366  67180  187  1  1   37   67    81 0.042   0.16
 3.01 Init -  75053  74709  345  2  0   56   86   144 0.220   8.22
 3.00 Prom -  89979  89940   40                              -5.86

 4.00 Prom +  99570  99609   40                              -2.46
 4.01 Sngl + 100001 100591  591  1  0   69   55  1572 0.975 148.19
 4.02 PlyA + 101863 101868    6                               1.05

 5.00 Prom + 110670 110709   40                              -5.96
 5.01 Init + 112180 112325  146  0  2   64   98    87 0.087   6.89
 5.02 Intr + 115293 115653  361  0  1   53   63   110 0.062   0.22
 5.03 Term + 121015 121227  213  0  0   30   49   196 0.690   7.13
 5.04 PlyA + 121584 121589    6                               1.05

 6.00 Prom + 122941 122980   40                              -4.66
 6.01 Init + 132437 132520   84  1  0   61   29   151 0.052   5.45
 6.02 Intr + 143135 143283  149  1  2   58   87    55 0.249   1.43
 6.03 Intr + 145022 145095   74  2  2   79   75    29 0.075  -0.25
 6.04 Intr + 168063 168171  109  1  1   84  109    43 0.477   5.34
 6.05 Intr + 169208 169267   60  2  0  103   50    60 0.408   1.55
 6.06 Intr + 174316 174416  101  1  2   59   53    69 0.114   0.25
 6.07 Term + 178139 178299  161  0  2  114   49    67 0.594   3.50
 6.08 PlyA + 179059 179064    6                              -0.45

 7.04 PlyA - 181951 181946    6                               1.05
 7.03 Term - 182496 182002  495  0  0   33   42   258 0.078  10.27
 7.02 Intr - 191246 191141  106  1  1   70   57    73 0.145   2.62
 7.01 Init - 193873 193722  152  1  2  111   71    24 0.263   2.53
 7.00 Prom - 198569 198530   40                              -2.16


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  43568  43763  196  1  1   92  121    54 0.862   8.52
S.002 Sngl - 182511 182002  510  0  0   82   42   238 0.886  14.76


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:20347466_20548053|GENSCAN_predicted_peptide_1|177_aa
XADSSVSNLQRAESEGEPGRRPTPPRRRPRRGKEAGKRPARRPLPRTRTPPSGTPPPALC
ERAPGRTGPGTQQALSALPLAIGSRRGRRTKPGEPSSTAPKDRRKSERGLTYRAAAAALP
QPGTPTVGHTAASLLAVLPLLRLRWRQCLLSPPTTLPPHPTSSFSSPSSSEPPKYRG

>gi568815596f:20347466_20548053|GENSCAN_predicted_CDS_1|534_bp
nnggccgacagctcggtctctaacctccagcgcgccgaatcggagggagaaccgggtcgg
cgccccacgcccccgaggcggcggccccgcagagggaaggaagcgggaaagcggccggcg
cggcgccccctcccccgcacgcgcacacccccttccggcacccctccccctgcattgtgc
gagcgggccccaggccgcaccggcccgggcactcagcaggccctatccgccctcccgctg
gcgatcggctcccgccgaggccgccgcacaaagcctggggagccatcctcgacggcgcca
aaggaccggagaaagagcgaacgcggactgacttacagggctgctgcggccgcgctgcct
cagccggggacaccgaccgttgggcacacggcggcgtcgctcttggcggtcctccccctc
ctccgccttcggtggcggcaatgtcttctttctccacctaccaccctccccccccacccc
acctcctccttctcctccccctcctcctccgaaccaccgaagtaccgagggtga

>gi568815596f:20347466_20548053|GENSCAN_predicted_peptide_2|404_aa
MGLSYFHELQLIVLTKSALEDGKLGGLLFFLAYPVIAAKSVKSPSSVLESSKSSEAASVS
YWYTVPSSSFHVLALSACSFSRCIVQAVSESTILGSGGSCFPNNWVMCLSLFSSVIRLIL
MVDNRVPGCTGSVVLASASGKGPKKLTVMAEGGEETGMSYGEREQERVRTRSQTPLNNQL
STFLVIFTYLLVARLATIASVSLSFAEHAMVPFYPGCASLPPAVLKNVAVTSILLLMVAN
CWSLKLATMLTNPTRQCDWQGRAAQRGFLGEESGAKPPRADAACGNTAMWSSMNNPDTKK
GKACLRHKEICHNAVFECTVWYRAQTAAKEKALQMRAWLSQGSHLHSRHHTPGLSLLVLA
PVINHPQTEFLNIFLFLLSGFLVYFPLVHFQCQPRCLQLAALHL

>gi568815596f:20347466_20548053|GENSCAN_predicted_CDS_2|1215_bp
atgggtctttcctacttccatgagcttcagcttattgtgttgactaagagtgccctggaa
gatggcaagctaggaggactgcttttcttcctggcttatcctgtcatagcagccaagtct
gttaagagtcctagctcagtgctggaatcaagcaagagctctgaagcagcctccgtaagc
tactggtacacggtcccttctagctcctttcatgtgctcgcattgagtgcctgcagcttt
tccaggtgtatagtgcaagctgtcagtgaatctaccattctggggtctggaggctcctgc
ttccctaacaactgggtcatgtgtctctcactgttcagctcagtcatccggctcattctc
atggttgataacagagttccaggctgtacaggaagtgtggtgctggcatctgcttctggc
aagggccccaagaagcttacagtcatggcagaaggtggagaggaaacaggcatgtcatat
ggcgaaagggagcaagagagagtgaggacgaggagccagactcctttaaacaaccagctc
tcaaccttcctggtcatcttcacatatttgctggtggccagactagctaccattgcttct
gtttctctgagctttgctgagcatgcaatggttcccttttaccctggctgtgcctcactg
ccccctgctgtgctcaagaatgtggctgtcaccagcatcctcctgctgatggtggctaac
tgctggagcttgaagctggccaccatgctgacaaatcccaccaggcagtgtgactggcaa
ggcagagcagcccaacgaggcttcctgggagaggagtctggagccaagcctccaagggca
gatgcagcctgtggcaacacagctatgtggagcagcatgaacaatccagacaccaaaaag
ggcaaggcatgtctgcgccacaaggaaatatgtcacaacgctgtgttcgaatgcacagtt
tggtaccgtgcccaaacagcagcgaaggaaaaagccttgcaaatgcgtgcctggctttcc
caaggttcccaccttcattcccgccatcacactcctggcttatctctactggtgctggcg
cccgtcatcaaccatccccagacagagttcctaaacatcttcctcttcctgctcagtggc
ttcctggtgtacttcccacttgtccacttccagtgccagcccaggtgtttgcagctggcc
gctctacatctctag

>gi568815596f:20347466_20548053|GENSCAN_predicted_peptide_3|217_aa
MEVGADSKGLALSSEYLGAIMDQGLTPILGKFFKNSSVQCNLDSPVWDGSIVPQIWEVLG
HFPGPEVPCPHNPSESWGSAIQASLSRSPAFPNSHMCNGNAASQKQGPLALCLHRSTQMK
RNQKNNSGNMKKQGSLAPTKDQTSSPAMDPNQDEISELPEKEFRMLIIKLIKKAPKKEKV
VDTVLAPVWPMQLLHYVILELGLKLEYYAAGACVHDS

>gi568815596f:20347466_20548053|GENSCAN_predicted_CDS_3|654_bp
atggaagttggtgctgacagcaaggggctggctctatcctctgagtatctgggagccatc
atggatcaaggtctcactcccatattaggaaaattctttaaaaattcctccgtgcagtgc
aatcttgattctccagtgtgggatgggagcattgtgccccagatatgggaagtcctgggc
cacttccctggaccagaagtgccgtgtccccacaacccatcagagagctggggaagtgcc
atccaggcgagcctgagcaggtccccggcctttcccaattcccacatgtgcaatgggaat
gcagccagtcagaagcaagggcctctggctctgtgcctccacaggtcaacccaaatgaaa
aggaaccagaaaaacaattctggtaatatgaaaaaacaaggttctttagcacccacaaaa
gatcaaaccagctcaccagcaatggatccaaaccaagatgaaatatctgaattgccagaa
aaagaattcagaatgttgattattaagctaatcaagaaggcaccaaagaaagagaaggta
gttgatactgtgctcgcccccgtgtggcccatgcagctactgcactatgtcatcttggaa
ctgggactaaagctggagtattatgctgcaggcgcatgtgtccatgacagctag

>gi568815596f:20347466_20548053|GENSCAN_predicted_peptide_4|196_aa
MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
KRYGSQNGCINCCKVL

>gi568815596f:20347466_20548053|GENSCAN_predicted_CDS_4|591_bp
atggcggccatccgcaagaagctggtggtggtgggcgacggcgcgtgtggcaagacgtgc
ctgctgatcgtgttcagtaaggacgagttccccgaggtgtacgtgcccaccgtcttcgag
aactatgtggccgacattgaggtggacggcaagcaggtggagctggcgctgtgggacacg
gcgggccaggaggactacgaccgcctgcggccgctctcctacccggacaccgacgtcatt
ctcatgtgcttctcggtggacagcccggactcgctggagaacatccccgagaagtgggtc
cccgaggtgaagcacttctgtcccaatgtgcccatcatcctggtggccaacaaaaaagac
ctgcgcagcgacgagcatgtccgcacagagctggcccgcatgaagcaggaacccgtgcgc
acggatgacggccgcgccatggccgtgcgcatccaagcctacgactacctcgagtgctct
gccaagaccaaggaaggcgtgcgcgaggtcttcgagacggccacgcgcgccgcgctgcag
aagcgctacggctcccagaacggctgcatcaactgctgcaaggtgctatga

>gi568815596f:20347466_20548053|GENSCAN_predicted_peptide_5|239_aa
MRKSQHKKAKNSKNQNTSSLPKDHNSSPAREQNWMENEFDELTEVGSRSIGSSGQDNQAR
EKIKDIQIGREEVKLSLFADDMIVYLENPIVSAPNLLKLISNFSQVSKYKINVRKSQAFL
YTNNRQTESQIMSELPFTIATKRIKYLGIQLTRDVRDLFKENYEPLLKEAELRRKFKRQI
LALKKEEHYRYQDIPKAHESEALSYLSLIMFIPQLDDLDSDVLEGIQVSDGQGAQGKTC

>gi568815596f:20347466_20548053|GENSCAN_predicted_CDS_5|720_bp
atgaggaaaagccagcacaaaaaggctaaaaattccaaaaaccagaacacctcttctctt
ccaaaggatcacaactcctcaccagcaagggaacaaaactggatggagaatgagtttgat
gaattgacagaagtaggctccagaagtattggaagttctggtcaggacaatcaggcaaga
gaaaaaataaaggatattcaaataggaagagaggaagtcaaattgtctctgtttgcagat
gatatgattgtatatttggaaaaccccatcgtctcagccccaaatctccttaagctgata
agcaacttcagccaagtctcaaaatataaaatcaatgtgcgaaaatcacaagcattccta
tacaccaataatagacaaacagagagccaaatcatgagtgaactcccattcacaattgct
acaaagagaataaaatacctaggaatacaacttacaagggatgtgagggacctcttcaag
gagaactacgaaccactgctcaaggaagcagaactgagaaggaagttcaagaggcagatt
ttggctctaaagaaggaagagcattatcgctatcaggatattccgaaagctcacgagtca
gaggcccttagctacctgtcgttgatcatgttcataccacagctggatgacctggactca
gatgttctggagggaattcaagtatcagatgggcagggtgctcaaggcaagacctgctga

>gi568815596f:20347466_20548053|GENSCAN_predicted_peptide_6|245_aa
MEGLNLQLWRLLLLLLLLASLGTAALPKTPGTETPGELTLRTLQASGLMLASRHVGDRMV
NGDGLHPLSRRAKPGGPRPVALGTLAADRTSRVSLTPHGEEQVNPNSSMRAQQPESPRVG
HPVMARLRGHPTVREEKSSWLKWSVELRGILDVPPGMSSLSSTCLLEQTAVEKFISSLSS
FQARLYPFDTGPGEAWEPGTGKPLQGTARHCVAQQIWTQGLRGQPDTPLSMRAKEASESS
VRGHS

>gi568815596f:20347466_20548053|GENSCAN_predicted_CDS_6|738_bp
atggaaggtcttaatctccagttatggagactgctgctgctgctgctgctgctggcctcc
ctggggacagctgccttacccaagactcctggtacagagacccctggggagctcacactg
cgcaccctgcaggcatcagggctgatgctagcttccaggcatgttggagaccggatggtg
aatggcgatgggctgcatcctctctccaggagggctaagcctgggggcccgaggcctgtg
gctctgggcacactcgctgcagacagaacttcccgagtcagtctcacccctcatggtgag
gagcaagtgaatcctaacagcagcatgagagcacagcagccagaatccccccgggttgga
caccctgtgatggcaaggttaaggggtcacccgacagtcagagaggaaaagagcagctgg
ctgaagtggtctgtggagctgcggggcatcttagatgtgcctcctggcatgagcagcctc
agttccacctgcttgctggagcaaacggcagtggaaaagttcatcagttctcttagctcc
ttccaggctcgtctctacccatttgacaccggccctggggaagcatgggagccagggaca
ggaaagcctctgcagggcacagccaggcactgtgtcgcccagcagatctggacacaaggg
ctgcggggccaaccagacactccactgagcatgcgggccaaggaggcctctgagagctca
gtgagaggacacagctag

>gi568815596f:20347466_20548053|GENSCAN_predicted_peptide_7|250_aa
MGKRRNGHPFLGERFRDHAVRRVFDVSPSPQTSAVGLPASARKVITSFRLKGSLQPPSGK
LPPWGQSLLPPVLPGVKDVLLLKGEQDLFRALWRSLSREVKEHVGTDQFGNKYYYILQNK
NWRGQTIQEKRIVEAANKKEVDYETGDIPTEWEAWIRRTRKTPPTMEEILKNEKHREEIK
IKSQDFYEKEKLLSKETSEELLPPPVQTQIKGRASAPYFGKEKPSVAPSSTGKTFQPGSW
MPRDGKSHNE

>gi568815596f:20347466_20548053|GENSCAN_predicted_CDS_7|753_bp
atggggaagaggcgcaatggtcatcccttcctaggagagcgtttcagagatcatgctgtg
cggcgggtgtttgatgtctcaccatcccctcagaccagtgcggttgggctaccagcatct
gcccgcaaggtgatcactagtttcaggcttaaggggtccctgcagccaccatcaggaaag
ctcccaccctggggacagtctctcctgcctcctgttcttcctggggtcaaagacgtgctc
ctgctcaagggtgagcaggatttgttccgcgccttgtggagatcgctgtcaagggaagtg
aaggagcacgtgggcacggaccaattcgggaacaaatactactacatcctgcagaacaag
aactggagaggacaaactattcaagagaaaagaattgtagaagcagcaaataaaaaagaa
gtagactatgaaacaggggatattccaacagaatgggaagcttggattagaagaacaaga
aagactccacctactatggaggaaatactaaagaatgaaaaacacagagaagaaatcaaa
ataaaaagccaagatttttatgaaaaagaaaaactccttagtaaagagaccagtgaggaa
ctcctgcctccaccagttcaaactcaaattaaaggccgtgcctctgctccatacttcgga
aaggaaaaaccctcagtggctcccagcagcactggtaaaacctttcagccaggatcctgg
atgccacgagatggcaagagccacaatgaatga