Result of FASTA (omim) for pF1KB5110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5110, 638 aa
  1>>>pF1KB5110 638 - 638 aa - 638 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8300+/-0.000468; mu= 13.1776+/- 0.029
 mean_var=133.8894+/-26.239, 0's: 0 Z-trim(113.2): 13  B-trim: 238 in 1/55
 Lambda= 0.110841
 statistics sampled from 22419 (22431) to 22419 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.263), width:  16
 Scan time: 10.800

The best scores are:                                      opt bits E(85289)
NP_003130 (OMIM: 182180) signal recognition partic ( 638) 4109 669.3 1.1e-191
XP_016873668 (OMIM: 182180) PREDICTED: signal reco ( 634) 3857 629.0 1.5e-179
NP_001171313 (OMIM: 182180) signal recognition par ( 610) 3661 597.6 4.1e-170


>>NP_003130 (OMIM: 182180) signal recognition particle r  (638 aa)
 initn: 4109 init1: 4109 opt: 4109  Z-score: 3562.0  bits: 669.3 E(85289): 1.1e-191
Smith-Waterman score: 4109; 100.0% identity (100.0% similar) in 638 aa overlap (1-638:1-638)

               10        20        30        40        50        60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
              550       560       570       580       590       600

              610       620       630        
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
       ::::::::::::::::::::::::::::::::::::::
NP_003 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
              610       620       630        

>>XP_016873668 (OMIM: 182180) PREDICTED: signal recognit  (634 aa)
 initn: 3857 init1: 3857 opt: 3857  Z-score: 3344.3  bits: 629.0 E(85289): 1.5e-179
Smith-Waterman score: 3857; 100.0% identity (100.0% similar) in 597 aa overlap (1-597:1-597)

               10        20        30        40        50        60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_016 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVNVR
              550       560       570       580       590       600

              610       620       630        
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
                                             
XP_016 LEAGMGVLHKGAEAARKSWLQRFLFLRGFKMHLT    
              610       620       630        

>>NP_001171313 (OMIM: 182180) signal recognition particl  (610 aa)
 initn: 3914 init1: 3661 opt: 3661  Z-score: 3175.1  bits: 597.6 E(85289): 4.1e-170
Smith-Waterman score: 3862; 95.6% identity (95.6% similar) in 638 aa overlap (1-638:1-610)

               10        20        30        40        50        60
pF1KB5 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN
       :::::::::::::::::::::::::::::::::::::::                     
NP_001 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQ---------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB5 QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL
             40        50        60        70        80        90  

              130       140       150       160       170       180
pF1KB5 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGP
            100       110       120       130       140       150  

              190       200       210       220       230       240
pF1KB5 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEK
            160       170       180       190       200       210  

              250       260       270       280       290       300
pF1KB5 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDD
            220       230       240       250       260       270  

              310       320       330       340       350       360
pF1KB5 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAV
            280       290       300       310       320       330  

              370       380       390       400       410       420
pF1KB5 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYV
            340       350       360       370       380       390  

              430       440       450       460       470       480
pF1KB5 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEK
            400       410       420       430       440       450  

              490       500       510       520       530       540
pF1KB5 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLIT
            460       470       480       490       500       510  

              550       560       570       580       590       600
pF1KB5 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAA
            520       530       540       550       560       570  

              610       620       630        
pF1KB5 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
       ::::::::::::::::::::::::::::::::::::::
NP_001 ISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
            580       590       600       610




638 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:06:50 2016 done: Thu Nov  3 16:06:52 2016
 Total Scan time: 10.800 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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