Result of FASTA (ccds) for pF1KB5108
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5108, 795 aa
  1>>>pF1KB5108 795 - 795 aa - 795 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3650+/-0.00119; mu= 9.8440+/- 0.070
 mean_var=124.6500+/-26.427, 0's: 0 Z-trim(104.5): 144  B-trim: 62 in 1/49
 Lambda= 0.114876
 statistics sampled from 7795 (7952) to 7795 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.244), width:  16
 Scan time:  3.720

The best scores are:                                      opt bits E(32554)
CCDS35000.1 PLAA gene_id:9373|Hs108|chr9           ( 795) 5350 899.0       0
CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2          ( 415)  341 68.7 2.2e-11


>>CCDS35000.1 PLAA gene_id:9373|Hs108|chr9                (795 aa)
 initn: 5350 init1: 5350 opt: 5350  Z-score: 4800.0  bits: 899.0 E(32554):    0
Smith-Waterman score: 5350; 100.0% identity (100.0% similar) in 795 aa overlap (1-795:1-795)

               10        20        30        40        50        60
pF1KB5 MTSGATRYRLSCSLRGHELDVRGLVCCAYPPGAFVSVSRDRTTRLWAPDSPNRSFTEMHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MTSGATRYRLSCSLRGHELDVRGLVCCAYPPGAFVSVSRDRTTRLWAPDSPNRSFTEMHC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSGHSNFVSCVCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKNTVCSLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSGHSNFVSCVCIIPSSDIYPHGLIATGGNDHNICIFSLDSPMPLYILKGHKNTVCSLSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 GKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTVKLWKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GKFGTLLSGSWDTTAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTVKLWKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GRCERTFSGHEDCVRGLAILSETEFLSCANDASIRRWQITGECLEVYYGHTNYIYSISVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GRCERTFSGHEDCVRGLAILSETEFLSCANDASIRRWQITGECLEVYYGHTNYIYSISVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PNCRDFVTTAEDRSLRIWKHGECAQTIRLPAQSIWCCCVLDNGDIVVGASDGIIRVFTES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EDRTASAEEIKAFEKELSHATIDSKTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EDRTASAEEIKAFEKELSHATIDSKTGDLGDINAEQLPGREHLNEPGTREGQTRLIRDGE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KVEAYQWSVSEGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KVEAYQWSVSEGRWIKIGDVVGSSGANQQTSGKVLYEGKEFDYVFSIDVNEGGPSYKLPY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 NTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQMLGLGNPSFSDPFTGGGRYVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NTSDDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTKGQMLGLGNPSFSDPFTGGGRYVPG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 SSGSSNTLPTADPFTGAGRYVPGSASMGTTMAGVDPFTGNSAYRSAASKTMNIYFPKKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SSGSSNTLPTADPFTGAGRYVPGSASMGTTMAGVDPFTGNSAYRSAASKTMNIYFPKKEA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 VTFDQANPTQILGKLKELNGTAPEEKKLTEDDLILLEKILSLICNSSSEKPTVQQLQILW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTFDQANPTQILGKLKELNGTAPEEKKLTEDDLILLEKILSLICNSSSEKPTVQQLQILW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 KAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLAL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 RTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB5 GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE
              730       740       750       760       770       780

              790     
pF1KB5 PAKVSECCRFILNLL
       :::::::::::::::
CCDS35 PAKVSECCRFILNLL
              790     

>>CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2               (415 aa)
 initn: 363 init1: 118 opt: 341  Z-score: 317.8  bits: 68.7 E(32554): 2.2e-11
Smith-Waterman score: 415; 29.1% identity (60.1% similar) in 296 aa overlap (13-297:129-414)

                                 10        20        30         40 
pF1KB5                   MTSGATRYRLSCSLRGHELDVRGLVCCAYPPGAFVSV-SRDR
                                     .:.::. .:   .    : :  ... : :.
CCDS24 ALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHR-NVVYAIAFNNPYGDKIATGSFDK
      100       110       120       130        140       150       

              50        60        70        80        90       100 
pF1KB5 TTRLWAPDSPNRSFTEMHCMSGHSNFVSCVCIIPSSDIYPHGLIATGGNDHNICIFSLDS
       : .::. .. .. .   : . ::.  . :. . :.:      :.:::. : .  ......
CCDS24 TCKLWSVET-GKCY---HTFRGHTAEIVCLSFNPQST-----LVATGSMDTTAKLWDIQN
       160        170          180       190            200        

             110       120        130       140         150        
pF1KB5 PMPLYILKGHKNTVCSLSSGKFGT-LLSGSWDTTAKVWLND--KCMMTLQGHTAAVWAVK
          .: :.::.  . ::: .  :  ...::.: :. ::  :  . .  : :: : . ...
CCDS24 GEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSAS
      210       220       230       240       250       260        

      160       170       180         190       200       210      
pF1KB5 ILPEQGLMLTGSADKTVKLWKA--GRCERTFSGHEDCVRGLAILSETEFLSCAN-DASIR
       .  . .:.:::: ::: ::: :  :.:  :..::.: .    .    .... :. :.. :
CCDS24 FNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTAR
      270       280       290       300       310       320        

          220       230       240       250         260       270  
pF1KB5 RWQI-TGECLEVYYGHTNYIYSISVFPNCRDFVTTAEDRSLRIW--KHGECAQTIRLPAQ
        ..  : .:.    :: . : .::  :.   ..: . :.. :::  . :.: :...  ..
CCDS24 IFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTD
      330       340       350       360       370       380        

            280        290       300       310       320       330 
pF1KB5 SIWCCCVLDNGDIVV-GASDGIIRVFTESEDRTASAEEIKAFEKELSHATIDSKTGDLGD
        :. :    .:.::. :..:.  :..                                  
CCDS24 EIFSCAFNYKGNIVITGSKDNTCRIWR                                 
      390       400       410                                      




795 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:05:33 2016 done: Thu Nov  3 16:05:34 2016
 Total Scan time:  3.720 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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