Result of FASTA (omim) for pF1KB5017
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5017, 338 aa
  1>>>pF1KB5017 338 - 338 aa - 338 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1257+/-0.000298; mu= 3.9182+/- 0.019
 mean_var=168.1439+/-35.137, 0's: 0 Z-trim(121.8): 19  B-trim: 2154 in 1/53
 Lambda= 0.098909
 statistics sampled from 38885 (38904) to 38885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.456), width:  16
 Scan time:  7.360

The best scores are:                                      opt bits E(85289)
NP_001231627 (OMIM: 601064) zinc finger protein 36 ( 338) 2302 339.9 4.5e-93
NP_004917 (OMIM: 601064) zinc finger protein 36, C ( 338) 2302 339.9 4.5e-93
NP_001231630 (OMIM: 601064) zinc finger protein 36 ( 407) 2302 340.0 5.3e-93
NP_008818 (OMIM: 612053) zinc finger protein 36, C ( 494)  674 107.7 5.3e-23
NP_003398 (OMIM: 190700) tristetraprolin [Homo sap ( 332)  509 84.1 4.7e-16


>>NP_001231627 (OMIM: 601064) zinc finger protein 36, C3  (338 aa)
 initn: 2302 init1: 2302 opt: 2302  Z-score: 1791.9  bits: 339.9 E(85289): 4.5e-93
Smith-Waterman score: 2302; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB5 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS
              250       260       270       280       290       300

              310       320       330        
pF1KB5 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD
       ::::::::::::::::::::::::::::::::::::::
NP_001 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD
              310       320       330        

>>NP_004917 (OMIM: 601064) zinc finger protein 36, C3H1   (338 aa)
 initn: 2302 init1: 2302 opt: 2302  Z-score: 1791.9  bits: 339.9 E(85289): 4.5e-93
Smith-Waterman score: 2302; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB5 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS
              250       260       270       280       290       300

              310       320       330        
pF1KB5 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD
       ::::::::::::::::::::::::::::::::::::::
NP_004 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD
              310       320       330        

>>NP_001231630 (OMIM: 601064) zinc finger protein 36, C3  (407 aa)
 initn: 2302 init1: 2302 opt: 2302  Z-score: 1790.7  bits: 340.0 E(85289): 5.3e-93
Smith-Waterman score: 2302; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:70-407)

                                             10        20        30
pF1KB5                               MTTTLVSATIFDLSEVLCKGNKMLNYSAPS
                                     ::::::::::::::::::::::::::::::
NP_001 GLQTGEAAPSPHRDLRDTPDPRPWLARTHRMTTTLVSATIFDLSEVLCKGNKMLNYSAPS
      40        50        60        70        80        90         

               40        50        60        70        80        90
pF1KB5 AGGCLLDRKAVGTPAGGGFPRRHSVTLPSSKFHQNQLLSSLKGEPAPALSSRDSRFRDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGGCLLDRKAVGTPAGGGFPRRHSVTLPSSKFHQNQLLSSLKGEPAPALSSRDSRFRDRS
     100       110       120       130       140       150         

              100       110       120       130       140       150
pF1KB5 FSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH
     160       170       180       190       200       210         

              160       170       180       190       200       210
pF1KB5 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADRPRLQHSFSFAGFPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADRPRLQHSFSFAGFPSA
     220       230       240       250       260       270         

              220       230       240       250       260       270
pF1KB5 AATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPG
     280       290       300       310       320       330         

              280       290       300       310       320       330
pF1KB5 GGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRRLPIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRRLPIF
     340       350       360       370       380       390         

               
pF1KB5 SRLSISDD
       ::::::::
NP_001 SRLSISDD
     400       

>>NP_008818 (OMIM: 612053) zinc finger protein 36, C3H1   (494 aa)
 initn: 941 init1: 552 opt: 674  Z-score: 534.0  bits: 107.7 E(85289): 5.3e-23
Smith-Waterman score: 737; 49.8% identity (64.2% similar) in 285 aa overlap (11-230:10-290)

               10        20        30        40                50  
pF1KB5 MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGG--------GFPRR
                 .:. . ::: .: :   :    . .::.::::::...        :: ::
NP_008  MSTTLLSAFYDV-DFLCKTEKSL---ANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRR
                10         20           30        40        50     

                     60                 70                     80  
pF1KB5 HSVT--------LPSS-----KF----HQNQLLSSLKGEPA-------P------ALSSR
       ::..         ::      ::    . ..  :.  : :.       :      :: ..
NP_008 HSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNK
          60        70        80        90       100       110     

             90          100          110       120       130      
pF1KB5 DSRFRDRSFSEGGER---LLPTQKQP---GGGQVNSSRYKTELCRPFEENGACKYGDKCQ
       ...::::::::.:.:   ::  :.:    ::.:.::.::::::::::::.:.::::.:::
NP_008 ENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ
         120       130       140       150       160       170     

        140       150       160       170       180          190   
pF1KB5 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL--AGAR-DLSA
       ::::.::::::::::::::::::::::::::::::::::::::.:::    .::  :: :
NP_008 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRA
         180       190       200       210       220       230     

                         200       210           220       230     
pF1KB5 --------------DRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPPILSAD
                      ::.:.::.::.::::.     .   .  ::::::: ::::     
NP_008 FGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSS
         240       250       260       270       280       290     

         240       250       260       270       280       290     
pF1KB5 DLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSP
                                                                   
NP_008 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS
         300       310       320       330       340       350     

>--
 initn: 240 init1: 152 opt: 280  Z-score: 230.2  bits: 51.5 E(85289): 4.4e-06
Smith-Waterman score: 280; 60.2% identity (79.5% similar) in 83 aa overlap (264-338:413-494)

           240       250       260       270             280       
pF1KB5 ADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGS-----PTTF-LFRPMSESPH
                                     ::  ::.:..     : .: : : .:.:: 
NP_008 FAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSP-
            390       400       410       420       430       440  

       290       300         310       320       330        
pF1KB5 MFDSPPSPQDSLSDQEGYLSSS--SSSHSGSDSPTLDNSRRLPIFSRLSISDD
       .::.:::: :::::...:::.:  :.: :::.::.:: .::::::::::::::
NP_008 VFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLPIFSRLSISDD
             450       460       470       480       490    

>>NP_003398 (OMIM: 190700) tristetraprolin [Homo sapiens  (332 aa)
 initn: 494 init1: 377 opt: 509  Z-score: 409.3  bits: 84.1 E(85289): 4.7e-16
Smith-Waterman score: 530; 40.2% identity (56.0% similar) in 266 aa overlap (95-337:90-332)

           70        80        90       100       110       120    
pF1KB5 NQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFE
                                     : .: :.  .: . ... ::::::::: : 
NP_003 LPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFS
      60        70        80        90       100       110         

          130       140       150       160       170       180    
pF1KB5 ENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRA
       :.: :.:: :::::::. :::. .::::::::::. :.  : :::: :::::::  :  :
NP_003 ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLA
     120       130       140       150       160       170         

          190       200       210        220               230     
pF1KB5 LAGARDLSADRPRLQHSFSFAGFPSAAATAAAT-GLLD--------SPTSITPPP---IL
         :        : :..:.::.:.::.  :.    ::          ::.:  :::    :
NP_003 APG------HPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL
     180             190       200       210       220       230   

            240       250       260       270       280       290  
pF1KB5 SADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSP
       : . . ..:  : .  .:              :.  : ::     : :            
NP_003 SPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGG-----LVRT-----------
           240       250       260       270                       

            300       310       320                  330        
pF1KB5 PSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNS-----------RRLPIFSRLSISDD
       :: :.  :: . : .::.:: .:::::... .           ::::::.:.:.:. 
NP_003 PSVQSLGSDPDEY-ASSGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE 
       280       290        300       310       320       330   




338 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:46:35 2016 done: Thu Nov  3 15:46:36 2016
 Total Scan time:  7.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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