GENSCAN 1.0	Date run:  3-Nov-116	Time: 15:47:00

Sequence gi568815584r:68689536_68892938 : 203403 bp : 47.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3555   3702  148  2  1   51    1   145 0.437   2.35
 1.02 Term +   3789   3907  119  1  2   83   39   106 0.656   3.90
 1.03 PlyA +   4071   4076    6                               1.05

 2.04 PlyA -   9709   9704    6                               1.05
 2.03 Term -  16287  15971  317  1  2   75   48   145 0.522   4.30
 2.02 Intr -  21547  21443  105  2  0   72   44   110 0.633   5.19
 2.01 Init -  27544  27445  100  1  1   75   94    53 0.604   4.18
 2.00 Prom -  34298  34259   40                              -6.56

 3.00 Prom +  42771  42810   40                              -5.46
 3.01 Init +  43768  43809   42  0  0   88   96    44 0.934   5.64
 3.02 Intr +  44411  44604  194  1  2   91   59    92 0.875   4.89
 3.03 Intr +  47337  47468  132  0  0   70  100    25 0.577   1.66
 3.04 Intr +  62287  62313   27  1  0   74   99    55 0.020   2.43
 3.05 Intr +  73816  73852   37  1  1  102   75    27 0.004   1.06
 3.06 Intr +  83551  83671  121  0  1   57   99    41 0.011   2.17
 3.07 Intr +  86590  86673   84  2  0   92   70    49 0.474   3.29
 3.08 Term +  91596  91780  185  1  2   47   43   110 0.310   0.11
 3.09 PlyA +  92836  92841    6                               1.05

 4.00 Prom +  93670  93709   40                              -0.26
 4.01 Init +  96013  96069   57  0  0   61   86    57 0.942   4.15
 4.02 Term +  98048  98134   87  1  0  105   48    79 0.903   3.26
 4.03 PlyA +  98199  98204    6                               1.05

 5.04 PlyA -  98401  98396    6                              -0.45
 5.03 Term - 100957  99998  960  1  0  136   46  1190 0.999 111.66
 5.02 Intr - 103535 103347  189  2  0   48   98    87 0.352   5.48
 5.01 Init - 106614 106540   75  0  0   37   94   111 0.478   5.69
 5.00 Prom - 118412 118373   40                              -4.36

 6.00 Prom + 119848 119887   40                              -7.76
 6.01 Init + 120169 120232   64  0  1   81   80    20 0.096   1.81
 6.02 Intr + 127087 127419  333  2  0   55   81   175 0.282   9.04
 6.03 Intr + 127453 127648  196  2  1   95   -6    52 0.457  -5.03
 6.04 Intr + 130839 131009  171  0  0   88  116    72 0.790   9.06
 6.05 Intr + 132687 132820  134  0  2   89   47    46 0.175   0.89
 6.06 Intr + 161025 161085   61  1  1   86  100    39 0.292   2.69
 6.07 Intr + 161767 161833   67  1  1  101   50    45 0.313   0.91
 6.08 Term + 164860 164967  108  0  0   90   45   104 0.426   4.81
 6.09 PlyA + 166460 166465    6                               1.05

 7.00 Prom + 170700 170739   40                              -1.76
 7.01 Init + 172227 172455  229  2  1   70   14   255 0.774  14.83
 7.02 Intr + 174732 174860  129  1  0   85   96    63 0.980   7.47
 7.03 Term + 176388 176503  116  1  2   96   52    42 0.955   0.13
 7.04 PlyA + 177274 177279    6                               1.05

 8.14 PlyA - 177538 177533    6                               1.05
 8.13 Term - 185605 185324  282  1  0   31   36   481 0.737  32.63
 8.12 Intr - 187705 187547  159  1  0   90   98   254 0.986  26.78
 8.11 Intr - 188988 188923   66  0  0   80   52    91 0.929   3.80
 8.10 Intr - 189534 189454   81  0  0   45   78   122 0.990   6.73
 8.09 Intr - 190573 190427  147  1  0   99   80   329 0.992  33.63
 8.08 Intr - 191454 191275  180  0  0   20   90   422 0.980  35.66
 8.07 Intr - 193057 192923  135  1  0  101   90   242 0.998  26.46
 8.06 Intr - 193520 193338  183  2  0   83   94   328 0.992  32.88
 8.05 Intr - 194773 194633  141  1  0   69   99   312 0.998  30.95
 8.04 Intr - 195348 195240  109  2  1  129   78   105 0.999  13.89
 8.03 Intr - 196040 195890  151  0  1   91   58   364 0.797  32.92
 8.02 Intr - 200751 200604  148  0  1  138   89   266 0.999  31.51
 8.01 Intr - 202748 202518  231  2  0  110   97   430 0.984  44.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_1|88_aa
MSPKFNPNKIKVVYLRCTSGEVSTTSALVPKISPLGLSPKKANEDITKTMIMKALEEPPR
DRNKQKNIKYSGNIICGEIINIAQQMQH

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_1|267_bp
atgtcacccaagttcaaccccaacaagatcaaagtcgtatacctgaggtgcacgagtggg
gaagtcagtactacatctgctctggttcctaagatcagccccctgggtctgtctccaaaa
aaggccaatgaggacatcaccaagacaatgatcatgaaagcccttgaggaaccaccaaga
gacagaaacaagcagaaaaacattaagtacagtggaaatatcatttgtggtgagatcatc
aacattgcccaacagatgcagcactga

>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_2|173_aa
MNSLNPIALLWAAAGEAMRCQPIDRVPGIYQAPGSKHQIQEISKAKTSAAQDGDTGAYFS
SGGCGEGRSLGPSDCYQVTLCRQGSFGVFPEKLTKAKAYLGLGFLQELWLASSPRHTLTL
HQGDLNFIDGENGEGRHYVNWPFILTLPASHFPMGNRPTSPSLPVTQGLNQGF

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_2|522_bp
atgaactcgctcaatcccattgctttactctgggcagcagctggggaagccatgagatgt
cagccaattgacagagtacccggcatttatcaggccccaggttcaaaacaccagatccag
gagataagtaaagccaagaccagcgctgcccaggatggagacacaggtgcctacttctcc
agtggtggctgcggcgaaggcagaagtcttgggccaagcgactgctaccaagtgacactg
tgcaggcaggggagcttcggtgtcttccctgagaaactgaccaaggccaaggcatacttg
ggcttaggtttcctgcaggaactatggctagctagctcaccccggcacacgctgaccttg
catcaaggtgacctgaacttcattgatggggagaatggggaagggagacattacgtgaac
tggccatttattctcacgctgccagccagccactttcccatgggaaacagacccacttca
ccctcactccccgtcactcaagggctgaaccagggtttctga

>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_3|273_aa
MQTKALTVTAEAGRMRKLKQGHKPDDLKGSHYCLLKNPNQESQINLPSILFGNHMSTLQL
YLACVPQGGRCRGLRKLRRTQYLRISALLQPRAAWKPSGKDVVSRVGPESRWNGVHVAGN
KGRNSIMIGCCRDGVTDVFILLEELPKFPDSTLGTHHPESVVGGEEDAKTLALCGEGRAV
WAGGVPWLSHFMLWRMEKEKLGKEEDPDLEQKGINDFLEWRGTARMQFNHNGQYLSENKA
PKEGTPMPATMLVPSTASPKVTSFKQTIKLLTD

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_3|822_bp
atgcagacaaaggcactgacagttacagcagaagctggaaggatgagaaaactgaaacaa
ggtcacaaaccagatgatctaaagggtagccactactgcctcctaaagaaccccaatcag
gaatcccagattaatttgcccagcatcctgtttggaaaccacatgtccaccctgcaactg
tacctggcttgtgtcccacaaggaggaagatgcaggggactccggaagctaaggaggacc
cagtatctcaggatttctgccctcctccagccccgagcagcctggaagccaagtggcaag
gatgtagtcagccgggtgggccctgagagccggtggaatggtgtccatgttgcaggaaac
aagggaagaaacagcatcatgatcggctgctgcagggatggggtcacggatgtgtttatc
ttgttggaggagcttcccaagttccctgactcaacactgggcacccaccacccagagtcg
gtggttggcggggaggaagatgctaagacactggccctatgtggggaggggagggctgta
tgggctggaggagtcccgtggctgtctcatttcatgctctggaggatggagaaggaaaaa
cttggaaaagaggaagacccagacttggaacaaaaaggaataaatgacttccttgaatgg
agaggaactgctagaatgcagtttaatcataatggacagtatctctcagaaaacaaggca
ccaaaagagggaacaccgatgccagcaaccatgctggtgccttctacagccagccccaag
gtcacaagtttcaagcagactataaagctgctaactgattag

>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_4|47_aa
MADLVQAPKPSLQDTLASRDLQGIQGENLTGKVKPKPSKTSSTINVS

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_4|144_bp
atggcagacctggtgcaggcccctaaacccagccttcaagacaccctggcctccagggac
ttgcaaggtatacaaggggagaaccttactggcaaagtcaaaccaaaaccaagtaaaacc
agctccaccatcaatgtttcttga

>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_5|407_aa
MGRARKSGLGQRSRPTASRSEAAVQPGVRKARGAGNWRVGLQTGEAAPSPHRDLRDTPDP
RPWLARTHRMTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPR
RHSVTLPSSKFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVN
SSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGP
RCHFIHNAEERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPI
LSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDS
PPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_5|1224_bp
atggggagggcccggaagtcgggcctgggacagaggagccggcccaccgcctcccggtcg
gaagcggcagtgcagcccggagtcagaaaggcgaggggcgccgggaactggcgtgtggga
ctccagacaggagaggctgcgccttccccgcaccgggaccttcgcgacacaccagatcct
cgcccctggctcgcgcgaacgcacaggatgaccaccaccctcgtgtctgccaccatcttc
gacttgagcgaagttttatgcaagggtaacaagatgctcaactatagtgctcccagtgca
gggggttgcctgctggacagaaaggcagtgggcacccctgctggtgggggcttccctcgg
aggcactcagtcaccctgcccagctccaagttccaccagaaccagctcctcagcagcctc
aagggtgagccagcccccgctctgagctcgcgagacagccgcttccgagaccgctccttc
tcggaagggggcgagcggctgctgcccacccagaagcagcccgggggcggccaggtcaac
tccagccgctacaagacggagctgtgccgcccctttgaggaaaacggtgcctgtaagtac
ggggacaagtgccagttcgcacacggcatccacgagctccgcagcctgacccgccacccc
aagtacaagacggagctgtgccgcaccttccacaccatcggcttttgcccctacgggccc
cgctgccacttcatccacaacgctgaagagcgccgtgccctggccggggcccgggacctc
tccgctgaccgtccccgcctccagcatagctttagctttgctgggtttcccagtgccgct
gccaccgccgctgccaccgggctgctggacagccccacgtccatcaccccaccccctatt
ctgagcgccgatgacctcctgggctcacctaccctgcccgatggcaccaataaccctttt
gccttctccagccaggagctggcaagcctctttgcccctagcatggggctgcccgggggt
ggctccccgaccaccttcctcttccggcccatgtccgagtcccctcacatgtttgactct
ccccccagccctcaggattctctctcggaccaggagggctacctgagcagctccagcagc
agccacagtggctcagactccccgaccttggacaactcaagacgcctgcccatcttcagc
agactttccatctcagatgactaa

>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_6|377_aa
MIPYGWLTGEFEQEPCARRTSGPRPSRRAHQARPARGDTGAGAAAAELPGRLGTQGAGEP
TLLQEAAAWGEVLATASFPSSRGRSPPEALGGSTMDVATLPSSGQLAEQHVWAPFGGLGD
VSTLSLPFATFEGHQSCHSAHSPNSRGFAAFGGSQTSVCTGIPPWTVLSNPDCWVPQPSQ
RICISNKSSGDAELLVRCLESSKARELTQPPGSRWLPFFDIHQCHWLSSGYTAIFSLKPP
NQLVKSVAPLCFLSRMKEALSSKDMATESATKDRPRGGEGLPTALPLLAELNGQGLTQAG
PGVEKIHWESCQHVTGLVARDRSPRSTQTTNQKKKNYCISSIPRTCFPDSSSPTTIVAFT
YGSTSISTHDEWTLRQC

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_6|1134_bp
atgataccctatggctggctcactggagaatttgagcaggagccctgtgccaggagaaca
tcaggcccgaggccatccagacgtgcacaccaggcccggcccgcgaggggagacacaggg
gccggggctgcggcggctgagctccctgggcggctcggaacgcaaggggccggcgagccg
acgctgctgcaggaggctgcggcgtggggcgaggttctcgctacggcttcgttcccgtcc
tcccgcggccgctctcccccggaagccctcggaggcagcacgatggacgtggccacactg
ccctccagtggccagctcgccgaacaacacgtctgggccccttttgggggtctgggtgac
gtgtccaccctctctctgccctttgctacatttgaaggtcaccaaagctgccacagtgca
cactcacccaacagcaggggatttgccgccttcggtggttctcaaacttcagtgtgcaca
ggaatccccccttggacagttctttcaaacccggattgctgggtcccccaaccaagtcag
agaatttgcatttctaacaaatcctcaggcgatgctgagctgctggtccgctgtctggag
tccagcaaggcaagggaactgacacagcccccagggtcacgatggcttccattctttgac
attcaccagtgtcactggctgagctcaggctacacggccatcttctctttgaagcctcca
aaccagctggtgaagtcagtagcacccctgtgttttttatcaaggatgaaagaagcatta
tccagcaaggacatggccactgaaagtgccaccaaggaccggccaaggggaggggaaggg
ctccctacagcccttcccctgctggctgagttgaatggccagggacttacccaggctggt
cctggggtggagaaaattcactgggaaagctgccagcatgtaacaggcctcgtggcaaga
gacagaagccccagaagcacacaaaccaccaatcagaagaaaaagaactactgcatttca
tcgattcccaggacatgcttccctgacagcagctctccaaccaccattgtggcttttact
tatggctccacgagtattagtacccatgatgagtggacactgcgacagtgctaa

>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_7|157_aa
MVMASDFYLRYYVGHKGKFGHEFLESEFQLDGKLRYANSSNYKNDVMIRKEAYVHKSLME
ELKRIIDDNEITKEDDEAGMVSLPVGLSVPVLFEDLVWGSFPAHLKGLERDFQVKSLSPD
LQSQGGEAGAAGSHFAALERDTFENGVQPEKLGPAGI

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_7|474_bp
atggttatggctagcgatttctacctgcgctactacgtagggcacaagggcaagtttggg
catgagtttttggagtccgaatttcagctggatggaaagcttagatatgccaacagtagc
aattacaaaaatgacgtcatgatcagaaaagaggcttacgtgcacaagagtttaatggaa
gaactgaagagaattattgatgacaatgaaatcacaaaagaagatgatgaagcaggaatg
gtttctttacctgtgggtctaagtgttccagtgctgtttgaggacctggtgtggggctcc
ttcccagcccatctcaaaggtctagagcgggacttccaggtgaagtcactgtccccagac
ttgcaatcacaaggtggggaagctggagctgctggaagtcattttgctgccttggagaga
gacacttttgagaatggggtccagccagagaagctaggccctgctggcatttga

>gi568815584r:68689536_68892938|GENSCAN_predicted_peptide_8|670_aa
LLEWIRRTIPWLENRVPENTMHAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKL
RLSNRPAFMPSEGRMVSDINNAWGCLEQVEKGYEEWLLNEIRRLERLDHLAEKFRQKASI
HEAWTDGKEAMLRQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELD
YYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWM
EGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERLAILGIHNEVSKIVQTYHVN
MAGTNPYTTITPQEINGKWDHVRQLVPRRDQALTEEHARQQHNERLRKQFGAQANVIGPW
IQTKMEEIGRISIEMHGTLEDQLSHLRQYEKSIVNYKPKIDQLEGDHQLIQEALIFDNKH
TNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRDHSGT
LGPEEFKACLISLGYDIGNDPQKKTGMMDTDDFRACLISMGYNMGEAEFARIMSIVDPNR
LGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDKEGGKMQTAHAAFTPPGFAAVSGR
AALRLLDFAAFLTTLSSQNYITMDELRRELPPDQAEYCIARMAPYTGPDSVPGALDYMSF
STALYGESDL

>gi568815584r:68689536_68892938|GENSCAN_predicted_CDS_8|2013_bp
ctgttggagtggatccgccgcacaatcccgtggctggagaaccgggtgcccgagaacacc
atgcatgccatgcaacagaagctggaggacttccgggactaccggcgcctgcacaagccg
cccaaggtgcaggagaagtgccagctggagatcaacttcaacacgctgcagaccaagctg
cggctcagcaaccggcctgccttcatgccctctgagggcaggatggtctcggacatcaac
aatgcctggggctgcctggagcaggtggagaagggctatgaggagtggttgctgaatgag
atccggaggctggagcgactggaccacctggcagagaagttccggcagaaggcctccatc
cacgaggcctggactgacggcaaagaggccatgctgcgacagaaggactatgagaccgcc
accctctcggagatcaaggccctgctcaagaagcatgaggccttcgagagtgacctggct
gcccaccaggaccgtgtggagcagattgccgccatcgcacaggagctcaatgagctggac
tattatgactcacccagtgtcaacgcccgttgccaaaagatctgtgaccagtgggacaat
ctgggggccctaactcagaagcgaagggaagctctggagcggaccgagaaactgctggag
accattgaccagctgtacttggagtatgccaagcgggctgcacccttcaacaactggatg
gagggggccatggaggacctgcaggacaccttcattgtgcacaccattgaggagatccag
ggactgaccacagcccatgagcagttcaaggccaccctccctgatgccgacaaggagcgc
ctggccatcctgggcatccacaatgaggtgtccaagattgtccagacctaccacgtcaat
atggcgggcaccaacccctacacaaccatcacgcctcaggagatcaatggcaaatgggac
cacgtgcggcagctggtgcctcggagggaccaagctctgacggaggagcatgcccgacag
cagcacaatgagaggctacgcaagcagtttggagcccaggccaatgtcatcgggccctgg
atccagaccaagatggaggagatcgggaggatctccattgagatgcatgggaccctggag
gaccagctcagccacctgcggcagtatgagaagagcatcgtcaactacaagccaaagatt
gatcagctggagggcgaccaccagctcatccaggaggcgctcatcttcgacaacaagcac
accaactacaccatggagcacatccgtgtgggctgggagcagctgctcaccaccatcgcc
aggaccatcaatgaggtagagaaccagatcctgacccgggatgccaagggcatcagccag
gagcagatgaatgagttccgggcctccttcaaccactttgaccgggatcactccggcaca
ctgggtcccgaggagttcaaagcctgcctcatcagcttgggttatgatattggcaacgac
ccccagaagaagacaggcatgatggacacggatgatttccgcgcctgcctgatctccatg
ggttacaacatgggagaagcagaatttgcccgcatcatgagcattgtggaccccaaccgc
ctgggggtagtgacattccaggccttcattgacttcatgtcccgcgagacagccgacaca
gatacagcagaccaagtcatggcttccttcaagatcctggctggggacaaggagggaggc
aaaatgcaaacggcacatgctgccttcacgccgccaggctttgcggctgtgtcgggccgc
gccgctttacggctgctggactttgcggccttcctgaccactctctcctcgcagaactac
attaccatggacgagctgcgccgcgagctgccacccgaccaggctgagtactgcatcgcg
cggatggccccctacaccggccccgactccgtgccaggtgctctggactacatgtccttc
tccacggcgctgtacggcgagagtgacctctaa