Result of FASTA (ccds) for pF1KB5012
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5012, 543 aa
  1>>>pF1KB5012 543 - 543 aa - 543 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8844+/-0.00087; mu= 3.5366+/- 0.053
 mean_var=172.4292+/-35.530, 0's: 0 Z-trim(112.9): 40  B-trim: 224 in 1/53
 Lambda= 0.097672
 statistics sampled from 13531 (13566) to 13531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.417), width:  16
 Scan time:  3.900

The best scores are:                                      opt bits E(32554)
CCDS8058.1 STIP1 gene_id:10963|Hs108|chr11         ( 543) 3622 522.3 5.8e-148
CCDS60827.1 STIP1 gene_id:10963|Hs108|chr11        ( 590) 3604 519.7 3.6e-147
CCDS60828.1 STIP1 gene_id:10963|Hs108|chr11        ( 519) 2977 431.4 1.3e-120


>>CCDS8058.1 STIP1 gene_id:10963|Hs108|chr11              (543 aa)
 initn: 3622 init1: 3622 opt: 3622  Z-score: 2769.8  bits: 522.3 E(32554): 5.8e-148
Smith-Waterman score: 3622; 100.0% identity (100.0% similar) in 543 aa overlap (1-543:1-543)

               10        20        30        40        50        60
pF1KB5 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
              490       500       510       520       530       540

          
pF1KB5 AIR
       :::
CCDS80 AIR
          

>>CCDS60827.1 STIP1 gene_id:10963|Hs108|chr11             (590 aa)
 initn: 3604 init1: 3604 opt: 3604  Z-score: 2755.6  bits: 519.7 E(32554): 3.6e-147
Smith-Waterman score: 3604; 99.4% identity (99.8% similar) in 543 aa overlap (1-543:48-590)

                                             10        20        30
pF1KB5                               MEQVNELKEKGNKALSVGNIDDALQCYSEA
                                     .. :::::::::::::::::::::::::::
CCDS60 TNGRGQRGYDWQCKRPIRVAEVRSSLHSWSLRWVNELKEKGNKALSVGNIDDALQCYSEA
        20        30        40        50        60        70       

               40        50        60        70        80        90
pF1KB5 IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE
        80        90       100       110       120       130       

              100       110       120       130       140       150
pF1KB5 AKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTRTLLSDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 AKRTYEEGLKHEANNPQLKEGLQNMEARLAERKFMNPFNMPNLYQKLESDPRTRTLLSDP
       140       150       160       170       180       190       

              160       170       180       190       200       210
pF1KB5 TYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKETK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKETK
       200       210       220       230       240       250       

              220       230       240       250       260       270
pF1KB5 PEPMEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PEPMEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF
       260       270       280       290       300       310       

              280       290       300       310       320       330
pF1KB5 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH
       320       330       340       350       360       370       

              340       350       360       370       380       390
pF1KB5 RTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN
       380       390       400       410       420       430       

              400       410       420       430       440       450
pF1KB5 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV
       440       450       460       470       480       490       

              460       470       480       490       500       510
pF1KB5 YQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQ
       500       510       520       530       540       550       

              520       530       540   
pF1KB5 MQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR
       :::::::::::::::::::::::::::::::::
CCDS60 MQKDPQALSEHLKNPVIAQKIQKLMDVGLIAIR
       560       570       580       590

>>CCDS60828.1 STIP1 gene_id:10963|Hs108|chr11             (519 aa)
 initn: 2976 init1: 2976 opt: 2977  Z-score: 2278.9  bits: 431.4 E(32554): 1.3e-120
Smith-Waterman score: 3414; 95.6% identity (95.6% similar) in 543 aa overlap (1-543:1-519)

               10        20        30        40        50        60
pF1KB5 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLA
       ::::::::::::::                        ::::::::::::::::::::::
CCDS60 GCKTVDLKPDWGKG------------------------LKHEANNPQLKEGLQNMEARLA
               70                                80        90      

              130       140       150       160       170       180
pF1KB5 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLS
        100       110       120       130       140       150      

              190       200       210       220       230       240
pF1KB5 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VLLGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKD
        160       170       180       190       200       210      

              250       260       270       280       290       300
pF1KB5 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA
        220       230       240       250       260       270      

              310       320       330       340       350       360
pF1KB5 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLA
        280       290       300       310       320       330      

              370       380       390       400       410       420
pF1KB5 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC
        340       350       360       370       380       390      

              430       440       450       460       470       480
pF1KB5 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHD
        400       410       420       430       440       450      

              490       500       510       520       530       540
pF1KB5 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMDVGLI
        460       470       480       490       500       510      

          
pF1KB5 AIR
       :::
CCDS60 AIR
          




543 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:44:42 2016 done: Thu Nov  3 15:44:42 2016
 Total Scan time:  3.900 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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