Result of FASTA (omim) for pF1KB4998
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4998, 221 aa
  1>>>pF1KB4998 221 - 221 aa - 221 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9941+/-0.000413; mu= -0.5695+/- 0.026
 mean_var=392.4985+/-84.966, 0's: 0 Z-trim(123.6): 192  B-trim: 3240 in 2/58
 Lambda= 0.064737
 statistics sampled from 43373 (43721) to 43373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.513), width:  16
 Scan time:  7.140

The best scores are:                                      opt bits E(85289)
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221) 1466 149.8 3.3e-36
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221) 1466 149.8 3.3e-36
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221) 1466 149.8 3.3e-36
XP_016872631 (OMIM: 603269) PREDICTED: serine/argi ( 282)  772 85.1 1.2e-16
NP_115285 (OMIM: 603269) serine/arginine-rich spli ( 282)  772 85.1 1.2e-16
NP_001177934 (OMIM: 605221) serine/arginine-rich s ( 261)  448 54.8 1.5e-07
NP_473357 (OMIM: 605221) serine/arginine-rich spli ( 262)  448 54.8 1.5e-07
NP_001182375 (OMIM: 600572) serine/arginine-rich s ( 226)  437 53.7 2.9e-07
NP_001026854 (OMIM: 600572) serine/arginine-rich s ( 238)  436 53.7 3.2e-07
NP_001287866 (OMIM: 605221) serine/arginine-rich s ( 217)  435 53.5 3.2e-07
NP_001177935 (OMIM: 605221) serine/arginine-rich s ( 173)  369 47.2   2e-05
NP_001287865 (OMIM: 605221) serine/arginine-rich s ( 172)  366 46.9 2.4e-05
NP_001287998 (OMIM: 180740) U1 small nuclear ribon ( 428)  374 48.2 2.5e-05
NP_006616 (OMIM: 605221) serine/arginine-rich spli ( 183)  363 46.7 3.1e-05
NP_001177936 (OMIM: 605221) serine/arginine-rich s ( 182)  362 46.6 3.3e-05
NP_003080 (OMIM: 180740) U1 small nuclear ribonucl ( 437)  349 45.9 0.00013
NP_001177938 (OMIM: 605221) serine/arginine-rich s ( 165)  332 43.7 0.00021
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297)  307 41.7  0.0015
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202)  303 41.1  0.0016
XP_005264541 (OMIM: 600572) PREDICTED: serine/argi ( 235)  304 41.3  0.0016
NP_001273555 (OMIM: 606447) RNA-binding protein wi ( 282)  303 41.3  0.0019
XP_005255105 (OMIM: 606447) PREDICTED: RNA-binding ( 305)  303 41.4   0.002
XP_016878363 (OMIM: 606447) PREDICTED: RNA-binding ( 305)  303 41.4   0.002
NP_542161 (OMIM: 606447) RNA-binding protein with  ( 305)  303 41.4   0.002
NP_001273554 (OMIM: 606447) RNA-binding protein wi ( 305)  303 41.4   0.002
NP_006702 (OMIM: 606447) RNA-binding protein with  ( 305)  303 41.4   0.002
XP_005255106 (OMIM: 606447) PREDICTED: RNA-binding ( 305)  303 41.4   0.002
NP_001269688 (OMIM: 602718) transformer-2 protein  ( 180)  298 40.6   0.002
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168)  291 39.9  0.0031
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168)  291 39.9  0.0031
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172)  291 39.9  0.0031
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172)  291 39.9  0.0031
XP_005264542 (OMIM: 600572) PREDICTED: serine/argi ( 223)  290 40.0  0.0039
XP_016867578 (OMIM: 602718) PREDICTED: transformer ( 181)  286 39.5  0.0044
NP_001269686 (OMIM: 602718) transformer-2 protein  ( 181)  286 39.5  0.0044
XP_016867579 (OMIM: 602718) PREDICTED: transformer ( 181)  286 39.5  0.0044
XP_005249782 (OMIM: 602718) PREDICTED: transformer ( 181)  286 39.5  0.0044
NP_001269687 (OMIM: 602718) transformer-2 protein  ( 181)  286 39.5  0.0044
NP_002130 (OMIM: 300199,300238) RNA-binding motif  ( 391)  289 40.2  0.0057
NP_037425 (OMIM: 602718) transformer-2 protein hom ( 282)  286 39.7  0.0058
XP_011531334 (OMIM: 600572) PREDICTED: serine/argi ( 121)  277 38.4  0.0063
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494)  286 40.1   0.008
XP_016877083 (OMIM: 600914) PREDICTED: serine/argi ( 145)  274 38.2  0.0085


>>NP_001182356 (OMIM: 600813) serine/arginine-rich splic  (221 aa)
 initn: 1466 init1: 1466 opt: 1466  Z-score: 771.0  bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
              130       140       150       160       170       180

              190       200       210       220 
pF1KB4 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
       :::::::::::::::::::::::::::::::::::::::::
NP_001 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
              190       200       210       220 

>>XP_016880431 (OMIM: 600813) PREDICTED: serine/arginine  (221 aa)
 initn: 1466 init1: 1466 opt: 1466  Z-score: 771.0  bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
              130       140       150       160       170       180

              190       200       210       220 
pF1KB4 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
       :::::::::::::::::::::::::::::::::::::::::
XP_016 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
              190       200       210       220 

>>NP_003007 (OMIM: 600813) serine/arginine-rich splicing  (221 aa)
 initn: 1466 init1: 1466 opt: 1466  Z-score: 771.0  bits: 149.8 E(85289): 3.3e-36
Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR
              130       140       150       160       170       180

              190       200       210       220 
pF1KB4 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
       :::::::::::::::::::::::::::::::::::::::::
NP_003 SRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS
              190       200       210       220 

>>XP_016872631 (OMIM: 603269) PREDICTED: serine/arginine  (282 aa)
 initn: 949 init1: 644 opt: 772  Z-score: 419.6  bits: 85.1 E(85289): 1.2e-16
Smith-Waterman score: 810; 60.6% identity (69.7% similar) in 254 aa overlap (1-213:1-253)

               10        20        30        40        50        60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
       :: :::::::.:: .:::::::::::::.::::::::::::::::::. .::  ::::::
XP_016 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
       ::::.:::.::  ::::: :::::::::.:::::  :  .::.: :  :  :::::::::
XP_016 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR-DLPRSRQGEPRGRSRGGGYGRRSR
               70        80        90        100       110         

                     130           140              150            
pF1KB4 S-------PRRRRRSRSR----SRSRSRSRSR-SRYSRSK------SRSR------TRSR
       :       ::::.:::::    :::::::: : ::::::       ::::      .:::
XP_016 SYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSR
     120       130       140       150       160       170         

        160                       170       180        190         
pF1KB4 SRST------------SKSRSAR----RSKSKSSSVSRSRSRSRSRSRS-RSPPPVSKRE
        : .            :.:: .:    ::.:::.: . ::: : :.: : :     :  .
XP_016 YRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR
     180       190       200       210       220       230         

     200       210       220                      
pF1KB4 SKSRSRSKSPPKSPEEEGAVSS                     
       :.:::::.:  .::                             
XP_016 SRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS
     240       250       260       270       280  

>>NP_115285 (OMIM: 603269) serine/arginine-rich splicing  (282 aa)
 initn: 949 init1: 644 opt: 772  Z-score: 419.6  bits: 85.1 E(85289): 1.2e-16
Smith-Waterman score: 810; 60.6% identity (69.7% similar) in 254 aa overlap (1-213:1-253)

               10        20        30        40        50        60
pF1KB4 MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
       :: :::::::.:: .:::::::::::::.::::::::::::::::::. .::  ::::::
NP_115 MSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSR
       ::::.:::.::  ::::: :::::::::.:::::  :  .::.: :  :  :::::::::
NP_115 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR-DLPRSRQGEPRGRSRGGGYGRRSR
               70        80        90        100       110         

                     130           140              150            
pF1KB4 S-------PRRRRRSRSR----SRSRSRSRSR-SRYSRSK------SRSR------TRSR
       :       ::::.:::::    :::::::: : ::::::       ::::      .:::
NP_115 SYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSR
     120       130       140       150       160       170         

        160                       170       180        190         
pF1KB4 SRST------------SKSRSAR----RSKSKSSSVSRSRSRSRSRSRS-RSPPPVSKRE
        : .            :.:: .:    ::.:::.: . ::: : :.: : :     :  .
NP_115 YRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR
     180       190       200       210       220       230         

     200       210       220                      
pF1KB4 SKSRSRSKSPPKSPEEEGAVSS                     
       :.:::::.:  .::                             
NP_115 SRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPKSPEEEGQMSS
     240       250       260       270       280  

>>NP_001177934 (OMIM: 605221) serine/arginine-rich splic  (261 aa)
 initn: 761 init1: 242 opt: 448  Z-score: 256.4  bits: 54.8 E(85289): 1.5e-07
Smith-Waterman score: 453; 41.1% identity (62.3% similar) in 236 aa overlap (3-212:4-234)

                10        20        30        40        50         
pF1KB4  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
          : :::      ::: : :..  :  . ::: : .:: . :::.: : ::.. ::::.
NP_001 MSRYLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAY
                    10        20        30        40        50     

      60        70        80        90        100          110     
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP-PDSHHSRRGP---PPRRYGGGGY
       :.:.: ::::::.  .:   . ::....:.:.  :  :.. ....:       ::     
NP_001 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR
          60        70        80        90       100       110     

         120        130                140       150        160    
pF1KB4 GRRSRS-PRRRRRSRSRS------RS---RSRSRSRSRYSRSKSRS-RTRSRSRSTSKSR
        :::::   .::::::::      ::   :.:  .: : :::.: . : . :.:: :.:.
NP_001 YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSDNDRFKHRNRSFSRSK
         120       130       140       150       160       170     

          170       180       190        200                 210   
pF1KB4 SARRSKSKSSSVSRSRSRSRSRSRSRSPP-PVSKRESKSR----------SRSKSPPKSP
       :  ::.:::.  .. ...::::: :..    .:: .::..          ::.: ::.: 
NP_001 SNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSK
         180       190       200       210       220       230     

           220                   
pF1KB4 EEEGAVSS                  
                                 
NP_001 SQSRSQSRSRSKSRSRSWTSPKSSGH
         240       250       260 

>>NP_473357 (OMIM: 605221) serine/arginine-rich splicing  (262 aa)
 initn: 1241 init1: 313 opt: 448  Z-score: 256.3  bits: 54.8 E(85289): 1.5e-07
Smith-Waterman score: 449; 41.2% identity (61.3% similar) in 238 aa overlap (3-212:4-235)

                10        20        30        40        50         
pF1KB4  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
          : :::      ::: : :..  :  . ::: : .:: . :::.: : ::.. ::::.
NP_473 MSRYLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAY
                    10        20        30        40        50     

      60        70        80        90        100          110     
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP-PDSHHSRRGP---PPRRYGGGGY
       :.:.: ::::::.  .:   . ::....:.:.  :  :.. ....:       ::     
NP_473 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR
          60        70        80        90       100       110     

         120        130                        140       150       
pF1KB4 GRRSRS-PRRRRRSRSRS------RSRS-----------RSRSRSRYSRSKSRSRTRSRS
        :::::   .::::::::      :: :           ::::.:  .: : :.:. :::
NP_473 YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRS
         120       130       140       150       160       170     

       160       170       180       190       200             210 
pF1KB4 RSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKS------RSRSKSPPK
       .:.:.:::  . :.. .. ::::: :....:. :    :: . ::      .::.: ::.
NP_473 KSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTD-SKTHYKSGSRYEKESRKKEPPR
         180       190       200       210        220       230    

             220                   
pF1KB4 SPEEEGAVSS                  
       :                           
NP_473 SKSQSRSQSRSRSKSRSRSWTSPKSSGH
          240       250       260  

>>NP_001182375 (OMIM: 600572) serine/arginine-rich splic  (226 aa)
 initn: 1246 init1: 243 opt: 437  Z-score: 251.5  bits: 53.7 E(85289): 2.9e-07
Smith-Waterman score: 445; 44.5% identity (61.2% similar) in 227 aa overlap (3-213:4-216)

                10        20        30        40        50         
pF1KB4  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
          :::      : :.. : ::   ..   :.:.:  :: .  :.: :.       ::::
NP_001 MSRYGR----YGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAF
                   10        20        30        40             50 

      60        70        80        90              100         110
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRY
       :.:.: ::::::. ..:: :. : ..::...       :. :::    .::   :  : :
NP_001 VEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCY
              60        70        80        90           100       

                 120       130       140       150        160      
pF1KB4 --G-GGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSA
         :  : :.   .   :::::::::::.::::.: :::::.::::  :::: :  .::: 
NP_001 ECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSI
       110       120       130       140        150       160      

        170       180       190       200          210       220   
pF1KB4 RRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSR---SKSPPKSPEEEGAVSS  
          .:.:.:. :::: : . ::  . :  :. .:.: ::   :.::  ::          
NP_001 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSPSGSPRRSASPERMD
        170       180       190       200       210       220      

>>NP_001026854 (OMIM: 600572) serine/arginine-rich splic  (238 aa)
 initn: 714 init1: 243 opt: 436  Z-score: 250.7  bits: 53.7 E(85289): 3.2e-07
Smith-Waterman score: 459; 44.1% identity (59.7% similar) in 238 aa overlap (3-218:4-227)

                10        20        30        40        50         
pF1KB4  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
          :::      : :.. : ::   ..   :.:.:  :: .  :.: :.       ::::
NP_001 MSRYGR----YGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAF
                   10        20        30        40             50 

      60        70        80        90              100         110
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA-------RYGRPPDSHHSRR--GPPPRRY
       :.:.: ::::::. ..:: :. : ..::...       :. :::    .::   :  : :
NP_001 VEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP----ARRPFDPNDRCY
              60        70        80        90           100       

                 120       130       140       150        160      
pF1KB4 --G-GGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSR-TRSRSRSTSKSRSA
         :  : :.   .   :::::::::::.::::.: :::::.::::  :::: :  .::: 
NP_001 ECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGR-RYSRSRSRSRGRRSRSASPRRSRSI
       110       120       130       140        150       160      

        170       180                190       200       210       
pF1KB4 RRSKSKSSSVSRSRS---------RSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG
          .:.:.:. ::::         .: :::::::      : :.:.::: :: .:    :
NP_001 SLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSG
        170       180       190       200       210       220      

       220         
pF1KB4 AVSS        
       .           
NP_001 SPRRSASPERMD
        230        

>>NP_001287866 (OMIM: 605221) serine/arginine-rich splic  (217 aa)
 initn: 455 init1: 313 opt: 435  Z-score: 250.6  bits: 53.5 E(85289): 3.2e-07
Smith-Waterman score: 435; 43.6% identity (63.0% similar) in 211 aa overlap (3-207:4-198)

                10        20        30        40        50         
pF1KB4  MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF
          : :::      ::: : :..  :  . ::: : .:: . :::.: : ::.. ::::.
NP_001 MSRYLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAY
                    10        20        30        40        50     

      60        70        80        90        100          110     
pF1KB4 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP-PDSHHSRRGP---PPRRYGGGGY
       :.:.: ::::::.  .:   . ::....:.:.  :  :.. ....:       ::     
NP_001 VQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR
          60        70        80        90       100       110     

         120        130       140        150       160       170   
pF1KB4 GRRSRS-PRRRRRSRSRSRSRSRSRSRS-RYSRSKSRSRTRSRSRSTSKSRSARRSKSKS
        :::::   .:::::::: . .  :: : : ::  .: : ::::.: .      : : ..
NP_001 YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPR-RSRSHSDND-----RFKHRN
         120       130       140       150        160              

           180       190       200       210       220      
pF1KB4 SSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS     
        : :::.: :::::.:.   :  :.: :..:::.                   
NP_001 RSFSRSKSNSRSRSKSQ---P--KKEMKAKSRSRPNCSWNTQYSSAYYTSRKI
     170       180            190       200       210       




221 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:42:13 2016 done: Thu Nov  3 15:42:14 2016
 Total Scan time:  7.140 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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