GENSCAN 1.0	Date run:  3-Nov-116	Time: 15:37:10

Sequence gi568815589r:107385754_107589052 : 203299 bp : 45.40% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3315   3452  138  0  0   86   77    64 0.283   4.68
 1.02 Intr +   8215   8297   83  1  2   57   48    55 0.010  -2.32
 1.03 Intr +  18534  18696  163  1  1   27   93   122 0.057   5.63
 1.04 Term +  34352  34436   85  2  1  121   44    51 0.151   1.13
 1.05 PlyA +  34500  34505    6                               1.05

 2.13 PlyA -  34554  34549    6                               1.05
 2.12 Term -  39874  39596  279  1  0   45   38   174 0.130   3.55
 2.11 Intr -  47628  47542   87  0  0   17  115    56 0.000   1.37
 2.10 Intr -  72583  72401  183  1  0   48   75   224 0.030  17.08
 2.09 Intr -  80388  80256  133  2  1   63   41    63 0.004  -0.25
 2.08 Intr -  80646  80521  126  2  0   55   88    45 0.005   0.99
 2.07 Intr - 100173 100038  136  1  1  119   52   110 0.056  10.13
 2.06 Intr - 101439 101275  165  1  0  117   91   127 0.991  15.83
 2.05 Intr - 102514 101542  973  1  1  107   86  1202 0.983 112.45
 2.04 Intr - 103012 102932   81  1  0   24   62   104 0.686   1.23
 2.03 Intr - 103297 103144  154  0  1  117   80   137 0.605  15.87
 2.02 Intr - 105825 105794   32  0  2  121   93    28 0.951   3.53
 2.01 Init - 106045 105998   48  1  0   82   69    61 0.658   4.55
 2.00 Prom - 106264 106225   40                              -4.06

 3.03 PlyA - 106573 106568    6                               1.05
 3.02 Term - 110115 110033   83  1  2   78   44    99 0.861   2.36
 3.01 Init - 132012 131925   88  0  1   41   72    84 0.124   2.90
 3.00 Prom - 133695 133656   40                              -2.46

 4.00 Prom + 135319 135358   40                              -2.26
 4.01 Init + 142854 142958  105  2  0   62   81    90 0.962   5.92
 4.02 Term + 149222 149341  120  1  0   -6   47   189 0.694   3.87
 4.03 PlyA + 150963 150968    6                               1.05

 5.03 PlyA - 151200 151195    6                               1.05
 5.02 Term - 157685 157437  249  2  0  -61   34   449 0.906  20.30
 5.01 Init - 179057 178902  156  2  0   65   94    65 0.381   4.79
 5.00 Prom - 189874 189835   40                              -0.06


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +   6727   6911  185  2  2   97   48   104 0.842   5.01
S.002 Init -  72553  72401  153  1  0  103   75   190 0.937  19.18
S.003 Term - 100173  99998  176  1  2  119   35   138 0.943   9.52


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:107385754_107589052|GENSCAN_predicted_peptide_1|156_aa
XTVPAVSEKLRKRAADFTQSLLDHLPLPSPWQLRGNTCVSSTVKWRCEREGGKGQPDATE
ALVNDCASTLSLNGVLPEGLKLSLCLDPAVNCQEIQRTEEHEELHRKYTISKIQAVDPPQ
VKQPGSVNWTSSPALTFKEGLYGHAHQGISRNQNGS

>gi568815589r:107385754_107589052|GENSCAN_predicted_CDS_1|471_bp
nncacagtcccagctgtttctgaaaagctgcgcaagagagcagctgacttcacccagtct
ctgctggaccaccttcctcttccatccccctggcagctaagaggaaacacatgtgtctcc
tcaactgtaaaatggagatgtgaaagggagggtggcaagggacagcctgatgctacagag
gccctagtaaacgattgtgcatctacactaagtctcaacggtgtcctgccagagggatta
aagctgagcctgtgtctagatccagctgtcaattgccaggaaatacaaaggacagaggaa
catgaagaactacaccgaaagtacacaatcagcaaaatccaggctgtggaccctccacaa
gtcaaacagcctgggtccgtcaactggacttcttctccagccctcaccttcaaagaagga
ttatatggtcatgcgcaccaaggcatctccaggaatcagaacggttcatga

>gi568815589r:107385754_107589052|GENSCAN_predicted_peptide_2|798_aa
MHSKNASVVGEEWKNQVDTSLSASVRRQPPGESDMAVSDALLPSFSTFASGPAGREKTLR
QAGAPNNVSIAPGRRERPLCMPVVRALRSRLGRKPGLHQSPGALSRWREELSHMKRLPPV
LPGRPYDLAAATVATDLESGGAGAACGGSNLAPLPRRETEEFNDLLDLDFILSNSLTHPP
ESVAATVSSSASASSSSSPSSSGPASAPSTCSFTYPIRAGNDPGVAPGGTGGGLLYGRES
APPPTAPFNLADINDVSPSGGFVAELLRPELDPVYIPPQQPQPPGGGLMGKFVLKASLSA
PGSEYGSPSVISVSKGSPDGSHPVVVAPYNGGPPRTCPKIKQEAVSSCTHLGAGPPLSNG
HRPAAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLPPGFHPHPGPNYPSFLPDQMQ
PQVPPLHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHL
RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSSWGPLPGDSDA
RLRRLLRGPERPLAVAGPRTRLIAFGFKVRIGFRSQARFPPFRQVVAKPVPRSVWGLVSE
PAPQNSSFLKLRAQVEHPHPAAIVTTMPKRKGEGDAKGDKSKVKDEPQRKSTKLSAKPAP
PKPEPKLKKAPAKKGEKAISHSLALLGYKPGQHVTILNYVRNCNTMAWDPGEPKSSLEGE
FTGFRVRLVEGTSWWYAWGLHGEEDKGDFQELQRQPTLRASSACAPRGARGNCGPTSPVS
LVDFASSDEAGAGLFRGM

>gi568815589r:107385754_107589052|GENSCAN_predicted_CDS_2|2397_bp
atgcattccaagaatgcttctgtggtcggcgaggagtggaaaaatcaggttgacaccagc
ctaagcgccagcgttcgccggcagccacctggcgagtctgacatggctgtcagcgacgcg
ctgctcccatctttctccacgttcgcgtctggcccggcgggaagggagaagacactgcgt
caagcaggtgccccgaataacgtgagtatcgctccgggccgccgggaacgcccgctgtgt
atgcccgtggtgcgagcactgcggagccgcctggggcgcaagccgggtcttcaccagtcc
ccgggcgcgctgtcgcgctggcgggaggagctctcccacatgaagcgacttcccccagtg
cttcccggccgcccctatgacctggcggcggcgaccgtggccacagacctggagagcggc
ggagccggtgcggcttgcggcggtagcaacctggcgcccctacctcggagagagaccgag
gagttcaacgatctcctggacctggactttattctctccaattcgctgacccatcctccg
gagtcagtggccgccaccgtgtcctcgtcagcgtcagcctcctcttcgtcgtcgccgtcg
agcagcggccctgccagcgcgccctccacctgcagcttcacctatccgatccgggccggg
aacgacccgggcgtggcgccgggcggcacgggcggaggcctcctctatggcagggagtcc
gctccccctccgacggctcccttcaacctggcggacatcaacgacgtgagcccctcgggc
ggcttcgtggccgagctcctgcggccagaattggacccggtgtacattccgccgcagcag
ccgcagccgccaggtggcgggctgatgggcaagttcgtgctgaaggcgtcgctgagcgcc
cctggcagcgagtacggcagcccgtcggtcatcagcgtcagcaaaggcagccctgacggc
agccacccggtggtggtggcgccctacaacggcgggccgccgcgcacgtgccccaagatc
aagcaggaggcggtctcttcgtgcacccacttgggcgctggaccccctctcagcaatggc
caccggccggctgcacacgacttccccctggggcggcagctccccagcaggactaccccg
accctgggtcttgaggaagtgctgagcagcagggactgtcaccctgccctgccgcttcct
cccggcttccatccccacccggggcccaattacccatccttcctgcccgatcagatgcag
ccgcaagtcccgccgctccattaccaagagctcatgccacccggttcctgcatgccagag
gagcccaagccaaagaggggaagacgatcgtggccccggaaaaggaccgccacccacact
tgtgattacgcgggctgcggcaaaacctacacaaagagttcccatctcaaggcacacctg
cgaacccacacaggtgagaaaccttaccactgtgactgggacggctgtggatggaaattc
gcccgctcagatgaactgaccaggcactaccgtaaacacacggggcaccgcccgttccag
tgccaaaaatgcgaccgagcattttccagctggggtcccctccctggggacagcgatgcc
cgcttgcggcggcttctgcgagggccagagcgcccgctggctgtggccgggcccagaaca
cgcctgatcgcttttgggttcaaagtcagaatcggtttccgttctcaggccaggtttccc
cccttccgccaggtcgtagccaaaccagtccccagatccgtgtggggcctagtgtcggaa
cccgcaccccagaatagctcgttcttgaagctccgtgctcaagtggagcacccacatcct
gctgccattgtcaccaccatgcccaagagaaagggtgaaggggatgctaaaggagataaa
tccaaagttaaggacgaaccacagagaaaatccacgaagttgtctgctaaacctgctcct
ccaaagccagagcccaagcttaaaaaggcccctgcaaagaagggagagaaggctatatcg
catagcctagcgctcctaggctacaaacctggacagcatgttaccatactgaattatgtg
cgcaactgtaacacaatggcctgggaccctggagaacctaagtcatcgctcgagggagag
tttactgggttcagggtgaggctggtggaaggaacatcgtggtggtacgcctggggtctc
cacggggaagaggacaagggggacttccaggagcttcagcggcagccaacgctgcgagcc
tcatctgcgtgcgcccctcgtggcgctcgcgggaactgcgggccgacgtcccctgtttct
ctcgttgatttcgccagctctgatgaggccggagcgggcctcttcagaggaatgtag

>gi568815589r:107385754_107589052|GENSCAN_predicted_peptide_3|56_aa
MPVFMPDAEDENSLGQYVIDGKGIASGGHELFKERDEVVKKEKGWKMKYQTNDPLN

>gi568815589r:107385754_107589052|GENSCAN_predicted_CDS_3|171_bp
atgcctgttttcatgccagacgctgaggatgaaaactccttggggcagtacgtgatagat
gggaagggcattgccagtggaggtcacgaacttttcaaagaaagagatgaagtggtgaag
aaagagaagggatggaaaatgaagtaccaaaccaatgaccctctcaactag

>gi568815589r:107385754_107589052|GENSCAN_predicted_peptide_4|74_aa
MWFQYESNSFHDPLARAPQPSAGGFWKVFWHIQRPKRKPYLKKKRKIEKKYVDEASKKEI
KDILIQYDMYPSGS

>gi568815589r:107385754_107589052|GENSCAN_predicted_CDS_4|225_bp
atgtggttccagtatgagtccaacagcttccatgaccctttagccagggctcctcaacct
agtgctggtggcttctggaaggtcttttggcacatccagaggccaaaaagaaaaccctat
ctcaaaaagaaaagaaaaatagaaaagaaatatgtcgatgaggcttccaagaaggagatc
aaagacatcctcatccagtatgacatgtatccttctggcagctga

>gi568815589r:107385754_107589052|GENSCAN_predicted_peptide_5|134_aa
MVPLRERAFLKTVHPRSPLAVTTGKARRIIQCDPCLSLLPGDLQGLSLRQAQGGDFTCHN
DTGGKFIYGEKFDDENLIRKHKGPGILSMANAGPNTKGFQFFMCTTKTEWSDGKHVVFDK
VKDSMDIMDAMEHS

>gi568815589r:107385754_107589052|GENSCAN_predicted_CDS_5|405_bp
atggtccccctgagagagcgagccttcttaaaaactgtgcaccctaggagtcctttggca
gtgaccaccggcaaagcacgtaggatcatccagtgtgacccctgtctgagcctgctgcct
ggggatctccagggcctcagcctcaggcaggcccagggtggtgacttcacatgccataat
gacactggtggcaaattcatctatggggagaaatttgatgatgagaacctcatccggaag
cacaaaggtcctggtatcttgtccatggcaaatgctggacccaacacaaaaggcttccag
tttttcatgtgcaccaccaagactgagtggtcggatggcaagcacgtggtctttgacaag
gtgaaggacagcatggatatcatggatgccatggagcactcttag