GENSCAN 1.0	Date run:  3-Nov-116	Time: 15:31:00

Sequence gi568815589f:124192941_124450944 : 258004 bp : 49.52% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  23650  23688   39  0  0  104   98   -19 0.217   0.98
 1.02 Intr +  25785  25943  159  2  0   81   92    81 0.698   7.98
 1.03 Term +  34975  35100  126  0  0  -27   43   282 0.518  10.48
 1.04 PlyA +  37228  37233    6                               1.05

 2.00 Prom +  40869  40908   40                              -5.56
 2.01 Init +  49433  49505   73  1  1   45   50   140 0.070   7.13
 2.02 Intr +  64150  64347  198  2  0   46   58    87 0.202   0.82
 2.03 Intr +  65009  65145  137  0  2    3  117   178 0.818  12.49
 2.04 Term +  66014  66031   18  1  0  121   46     5 0.828  -2.08
 2.05 PlyA +  66697  66702    6                               1.05

 3.07 PlyA -  67353  67348    6                               1.05
 3.06 Term -  70184  69967  218  0  2   82   55   110 0.422   4.41
 3.05 Intr -  72009  71921   89  2  2   59   50    81 0.254   1.01
 3.04 Intr -  74829  74712  118  1  1  125   58    -4 0.193  -0.18
 3.03 Intr -  81812  81681  132  0  0  114   49    84 0.852   7.72
 3.02 Intr -  82000  81845  156  2  0   46   65    72 0.500   0.68
 3.01 Init -  83344  83248   97  1  1   65   91    20 0.334   0.47
 3.00 Prom -  88344  88305   40                              -4.96

 4.08 PlyA -  88905  88900    6                               1.05
 4.07 Term -  92742  92626  117  0  0  126   34   106 0.633   7.54
 4.06 Intr -  94108  94035   74  2  2  113   99    12 0.463   3.93
 4.05 Intr -  97648  97545  104  0  2   82   77    45 0.389   2.62
 4.04 Intr -  97984  97862  123  0  0   99   75    99 0.396   9.40
 4.03 Intr - 102317 102244   74  2  2   71   56    71 0.469   0.40
 4.02 Intr - 103885 103756  130  0  1   52   36   113 0.675   3.20
 4.01 Init - 104283 104123  161  0  2   95   57    50 0.590   1.76
 4.00 Prom - 106554 106515   40                              -1.86

 5.00 Prom + 106609 106648   40                             -10.84
 5.01 Init + 109053 109114   62  2  2   73  115    47 0.268   4.74
 5.02 Intr + 118142 118286  145  2  1   65   72    32 0.137  -0.42
 5.03 Intr + 119569 119709  141  0  0   70   99   253 0.442  25.15
 5.04 Intr + 120983 121045   63  1  0   75  105    95 0.946   8.81
 5.05 Intr + 128519 128629  111  1  0   91  105   185 0.984  21.08
 5.06 Intr + 133390 133498  109  0  1   86   94   153 0.966  15.56
 5.07 Intr + 134398 134593  196  2  1  112   57   165 0.129  14.27
 5.08 Intr + 143611 143696   86  1  2  106   81    45 0.860   5.06
 5.09 Intr + 146631 146725   95  1  2   71  105   201 0.960  19.78
 5.10 Intr + 152885 152998  114  1  0   58   76    43 0.598   0.74
 5.11 Intr + 153881 154018  138  1  0   61   31   109 0.785   3.16
 5.12 Intr + 154769 154882  114  1  0  100  113   164 0.999  20.74
 5.13 Term + 157897 158007  111  0  0   93   53   151 0.993  10.66
 5.14 PlyA + 158938 158943    6                               1.05

 6.08 PlyA - 160082 160077    6                               1.05
 6.07 Term - 160769 160658  112  1  1  120   42    62 0.499   2.83
 6.06 Intr - 161613 161479  135  2  0  106  -28   134 0.390   3.28
 6.05 Intr - 162031 161943   89  1  2  102   65    29 0.798   0.77
 6.04 Intr - 163033 162652  382  0  1   -5   96   152 0.409   1.61
 6.03 Intr - 163975 163824  152  1  2   90  109   302 0.999  31.46
 6.02 Intr - 168479 168346  134  0  2   59    6   106 0.848  -0.14
 6.01 Init - 168933 168876   58  0  1   58   74    48 0.794   1.88
 6.00 Prom - 169192 169153   40                              -4.26

 7.09 PlyA - 169903 169898    6                               1.05
 7.08 Term - 171062 170919  144  2  0   61   48   142 0.571   5.41
 7.07 Intr - 191716 191658   59  2  2   97   87    56 0.001   5.00
 7.06 Intr - 212492 212377  116  1  2   48   92    98 0.776   6.29
 7.05 Intr - 218914 218840   75  0  0  102   78    14 0.437   0.43
 7.04 Intr - 219552 219412  141  2  0   41  111   148 0.957  11.87
 7.03 Intr - 221065 220968   98  1  2   73   83    35 0.982   0.31
 7.02 Intr - 221995 221902   94  0  1   91  121   111 0.996  14.67
 7.01 Init - 222485 222424   62  2  2  101   55   102 0.976   8.92
 7.00 Prom - 224236 224197   40                              -8.56

 8.00 Prom + 224853 224892   40                              -6.06
 8.01 Init + 225661 225851  191  0  2   82   81    86 0.104   5.78
 8.02 Intr + 235819 236139  321  1  0   71   56   162 0.032   6.28
 8.03 Intr + 245210 245399  190  2  1   61   76    72 0.031   2.89
 8.04 Term + 255220 255477  258  0  0   73   41   110 0.076   0.35
 8.05 PlyA + 256101 256106    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 199215 199538  324  2  0   50   43   188 0.815   6.50
S.002 Term + 239673 239706   34  0  1  119   43    62 0.808   1.86


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_1|107_aa
MAWQGEGTSGDHTRQHSRPQAWTSRLQQGPWPPPIALEAPEKRPFSAAAAGQTPPLEKKE
VKVLWWKKEEEEEEEEKEKEKKKKKKKKKKKKKKKKRRRSTRRANVL

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_1|324_bp
atggcctggcagggcgaagggacttcaggagatcatacaaggcagcactctaggccccag
gcctggacctcaaggctgcagcagggcccctggccgccccctatagccttggaagcccct
gagaagaggcccttcagtgcagctgcagcaggtcagacgcctcctctggagaagaaggaa
gtgaaagtgctgtggtggaagaaggaggaggaggaggaggaggaggagaaggagaaggag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaggaggaggagc
actagaagagcaaatgtattatga

>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_2|141_aa
MPLVMSGDSEIEMERRKRDTIEEGYHGQLKHFHSFGKQKPDGHSPCAQYSAAPKQAVSVP
GSSPPGVQHSFECGGEAAGVETAQPGAAALGGGGGGGTELTGVRPLRRKLVWDAPLQPPA
GQRTGPPAAAEPARAPPGLGG

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_2|426_bp
atgcccctggtgatgagtggagattcagaaattgaaatggagaggcggaagcgggacacg
attgaggagggatatcacggccagttgaagcacttccactcatttggcaaacagaagcca
gacgggcattcaccctgtgcccagtacagtgctgcgcccaagcaggcagtcagtgtccct
ggctccagccctcctggggtgcagcacagttttgaatgtggaggggaggcagcaggggtg
gaaacagcccagccaggagcggccgctctcggcggtggcggcggcggcggaaccgagctg
acgggcgtgcggccgctgcgccgcaaactcgtgtgggacgcaccgctccagccgcccgcg
ggccagcgcaccggtcccccagcggcagccgagcccgcccgcgcgccgccaggcctgggg
ggctga

>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_3|269_aa
MIPETLEPLKPLGSISSDLQPRILYSLIQGSPADIANQCQSPKPSQHGISGSPYQSIRAG
TGEDNDCQPCYKWTCRMASTVRQTGSQTPEILSDVQVEYMIFSIVLDQHSYMKAKTLQMS
AHFLGELGGAKKACGAQPSLAEWHHETWSQGFLISGSQWPAQGRPSTWQQAGGFAPFASP
ELTFLILSGLSGKALMPGVFPTSPSFKDVEDKEQERAGIREGACGLIPILPLTCSKNAPL
EHGEVLLKGISVHPGQHDPPRKPQPNSEA

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_3|810_bp
atgattcctgagactctggagccactgaagcccctggggagcatttcttctgacttgcag
cccagaattctttactccctgatccaggggtctccagcagacattgctaatcaatgccag
tctccaaagccttctcaacatggcatctcgggcagcccctatcaatctatcagagccggc
actggagaggacaatgattgccagccttgctacaaatggacatgcagaatggcaagcaca
gtgcgtcagaccggatcccagacccctgaaattctatcagatgtccaggtggaatacatg
atattcagcattgtcctcgatcagcattcttacatgaaagcaaaaaccctccagatgtct
gctcactttcttggggaattgggaggggccaagaaggcatgtggtgctcagccgtccctt
gctgaatggcatcatgaaacctggtcacagggcttcctcatttcagggtcccagtggcca
gctcaggggcggcccagcacctggcaacaggcaggtggctttgcccccttcgcctccccg
gagctcacgttcctcatccttagtggcctttcagggaaagctctgatgccaggtgtcttc
ccaacaagcccaagtttcaaagacgttgaggacaaggaacaagagagggcaggcattcga
gaaggggcctgtggactaattcccatactgccactcacctgcagtaagaacgcgcctctg
gaacatggagaagttcttcttaaagggatctctgttcacccaggtcaacatgacccaccc
cgcaagcctcagcctaattctgaagcatga

>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_4|260_aa
MGPEAGTCPGSSLPQVTQLVNDTAGAVGPKIAALCPTQHGLFRTALEQTSSSSTGKSFLC
LLSNATLHGDWWLIVARPVKHDLRHQEGSVQGPCLEQLSTCKAKHPARILQLHDSGSLAA
LRSPGAGPGTATHKLKRARSCSGKGPMAAASGGARSRGALDNRTSHFCPGQTTPVPHLQL
IATGTDTGIQQLRPWRTPRGAYHSRGAAGGHINTCCAPAGSQALHLRLGHSGASGPVFGD
PEPSSSISAVARICCLFHEL

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_4|783_bp
atggggcctgaggcagggacttgcccagggtcatccctgccccaggtaacacagctggta
aatgacacagctggggctgttggacccaagattgctgctctatgtcctacgcagcatggc
ctctttaggactgctctggagcaaacgtcttcatcatctacggggaagtcattcctgtgc
ctcctgtcaaatgccacacttcatggagactggtggctcatcgtggcccggccagtgaag
cacgacctcagacaccaggagggctctgtccaaggaccctgcttggagcagctctccacc
tgcaaagccaagcatcctgcccggattctgcagctccatgacagcggaagcctggctgct
ctaaggtccccaggagcaggccctggaactgctacccacaagctaaaaagagcacgaagc
tgctcaggaaaaggacccatggctgctgcttctggcggggccaggtcacggggagctttg
gacaacagaacgagccacttctgccctgggcaaaccacccctgtgccccatctgcagctc
atcgccactgggactgacacaggcatacagcagctgaggccctggaggacgcccaggggg
gcatatcacagccggggggcagcaggtggacatatcaacacctgctgtgccccagctgga
tcccaggctttgcatctgcggcttggacacagtggagccagcgggcctgtgtttggagat
cctgaaccatcctcctcaatctcggctgttgctcggatctgctgcctcttccatgaactc
tga

>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_5|494_aa
MEGVPTTSATPWGLCILLTHRHLRLRRSWSGQQFLVFPGGEAAVRRASPVVLGLVLMPSA
RVLAPKDASRHPNTLSFRCSLADFQIEKKIGRGQFSEVYKATCLLDRKTVALKKVQIFEM
MDAKARQDCVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQK
RLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSET
TAAHSLGKGDLSVPQQPPAVLVTMQGDANILPTCVWVLDPLFLMSQATSQPAFATLGLQL
TTETVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMSFENARLTLCTRESHFNSWTCVT
WVVHLAGSQPAPGQAFRSPVAVAGLQGRTGAAGLTSSKAVLALLVVPPPCASPSLATGLW
MAALQSPFYGDKMNLFSLCQKIEQCDYPPLPGEHYSEKLRELVSMCICPDPHQRPDIGYV
HQVAKQMHIWMSST

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_5|1485_bp
atggagggagttccaacaacctctgccacaccctggggcctgtgcatcctcctgacccac
aggcatctcaggctgagacgcagctggtccggccagcagttcctggtgtttccaggtggg
gaagcagctgtcagaagggccagtcctgtagttctcggtttggtcttgatgccttccgcc
agggtgctggctcctaaagacgcctcgaggcatcccaacacgctgtcttttcgctgctcg
ctggcggacttccagatcgaaaagaagataggccgaggacagttcagcgaggtgtacaag
gccacctgcctgctggacaggaagacagtggctctgaagaaggtgcagatctttgagatg
atggacgccaaggcgaggcaggactgtgtcaaggagatcggcctcttgaagcaactgaac
cacccaaatatcatcaagtatttggactcgtttatcgaagacaacgagctgaacattgtg
ctggagttggctgacgcaggggacctctcgcagatgatcaagtactttaagaagcagaag
cggctcatcccggagaggacagtatggaagtactttgtgcagctgtgcagcgccgtggag
cacatgcattcacgccgggtgatgcaccgagacatcaagcctgccaacgtgttcatcaca
gccacgggcgtcgtgaagctcggtgaccttggtctgggccgcttcttcagctctgagacc
accgcagcccactccctaggtaagggggacctgtctgtgccccagcagcccccagcggtc
ctggtgaccatgcagggagacgcaaacattctccccacgtgtgtttgggtcctggatccc
ctcttcctcatgtcacaggccacatctcagccagcctttgccacgctgggactccagctc
accacagagactgtggggacgccctactacatgtcaccggagaggatccatgagaacggc
tacaacttcaagtccgacatctggtccctgggctgtctgctgtacgagatgtcctttgaa
aatgcccgattaaccctttgcacccgagagtctcattttaattcctggacatgcgtcacc
tgggtggtgcatttggcaggctcccagcccgctcctggtcaggcctttcgctcccccgtg
gctgtggccggccttcagggcagaaccggtgccgcaggcctcacctcatcaaaggcggtc
ttggccctgctggtggtgcctcctccgtgtgccagcccaagcctcgccacaggcctgtgg
atggcagccctccagagccccttctatggagataagatgaatctcttctccctgtgccag
aagatcgagcagtgtgactaccccccactccccggggagcactactccgagaagttacga
gaactggtcagcatgtgcatctgccctgacccccaccagagacctgacatcggatacgtg
caccaggtggccaagcagatgcacatctggatgtccagcacctga

>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_6|353_aa
MRKKFLGSTILDLHYSGCRALGYSCGDHYVADVDLFVPFTSAAHLSCSGKWNCTLESRDT
LCDAEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTSPEEVS
TTFCRLASISHCTHNSTSGVIHKEGMERSEPAGIHCGLHSTLRKLSGLLMGWGSTGPENA
GTGVGECWWLAWWLPANQSVLEMELNQMTSNEPTKSLGPLAGRQATFQAQSCVGEPGFAE
LQPSSTRSCSPLARKAEALNACRKNRALSPQCPCVQGRGWVFREHKAMAQPAAFWQFLKD
SKFDRDITPAGARAEEQLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_6|1062_bp
atgcggaaaaagtttcttggcagtactattttggacctgcactatagtggatgccgagca
ctcgggtacagctgtggtgaccattacgtggccgacgtggacctctttgtgccttttaca
agtgctgcccatttgtcatgtagcggtaaatggaactgcacattggagtccagggacaca
ttgtgcgatgcggaggaggaagccaagaatctggtgagcgaagccatcgcagctggcatc
ttcaacgacctgggctccggaagcaacattgacctctgcgtcatcagcaagaacaagctg
gattttctccgcccatacacagtgcccaacaagaaggggaccagccccgaggaagtgagc
accaccttctgcaggcttgcttccatctcccactgcacacacaactccacatcaggagta
attcacaaggaaggaatggaacgttcagaaccagcaggtattcactgtgggctgcactca
accttgcggaagctcagtgggctcctgatggggtggggcagcacggggccagagaacgct
ggcactggggttggggagtgttggtggctggcttggtggcttccagcaaatcagtctgtc
ttggaaatggagctaaaccagatgacctctaatgagcccacgaagtccctcgggccttta
gcaggaaggcaagccacctttcaggcccagagctgtgttggggaaccgggctttgccgag
ctccagccctccagcacacggtcttgcagtccactggcacgtaaggcggaagctctgaat
gcatgccgcaaaaatcgggcactgtcaccacagtgcccgtgtgtccaggggagaggatgg
gtgttccgggagcacaaggccatggcacagccagcagccttctggcagttcctgaaggac
agcaagtttgacagagatattaccccagctggggctagagcagaggaacagcttggccgg
tacaggtgtgagaaagggactactgcagtcctcactgagaaaatcactcctctggagatt
gaggtgctggaagaaacagtccaaacaatggacacttcctga

>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_7|262_aa
MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGAD
TRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVV
TANRMLKQMLFRTYAKALYARFHPFNSEIGTISVSYLYQGYIGAALVLGGVDVTGPHLYS
IYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMERHYSHTYEGHSLAQRVTRCPGLSSF
WATLFQPIVAVQPLTSLPGCEF

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_7|789_bp
atggcggctgtgtcggtgtatgctccaccagttggaggcttctcttttgataactgccgc
aggaatgccgtcttggaagccgattttgcaaagaggggatacaagcttccaaaggtccgg
aaaactggcacgaccatcgctggggtggtctataaggatggcatagttcttggagcagat
acaagagcaactgaagggatggttgttgctgacaagaactgttcaaaaatacacttcata
tctcctaatatttattgttgtggtgctgggacagctgcagacacagacatgacaacccag
ctcatttcttccaacctggagctccactccctctccactggccgtcttcccagagttgtg
acagccaatcggatgctgaagcagatgcttttcaggacctatgctaaagcgctttatgca
cgatttcatccttttaactctgagatagggactattagcgtctcctatttgtatcaaggt
tacattggtgcagccctagttttagggggagtagatgttactggacctcacctctacagc
atctatcctcatggatcaactgataagttgccttatgtcaccatgggttctggctccttg
gcagcaatggctgtatttgaagataagtttaggccagacatggagaggcattattctcat
acttacgaagggcactctttggctcagagagtgacccgctgtccagggctgtcctcattc
tgggctacccttttccagcccattgtggccgtgcagccgctgacatctcttcctggctgc
gagttctga

>gi568815589f:124192941_124450944|GENSCAN_predicted_peptide_8|319_aa
MHTGRTPYEDEGRHWSDDPMGQGMPKVAIKPPEARRQVWNSLPHGSQKKQLCRHLALDLH
PPEWSSEQHQRPPDVLYLRCQSARCPGLFTGSWPPCTGSKPWPWARLRQEAGRAVIGGAA
MLSGQHRPGILPQQSPLSGSMLTFQACGDFLPNAEPAPGTNYLFPKKSIKRNPSSSPPTL
LAIFGFFSFHPTTQVSRKFPTPGQLPGPDRVQVPCKLSAIMEQNPWKWRQEEKQAMSPRS
AVAIAYPQPAGFVLGNKQPVKAARCKVDRWLLAANWTMPRLCGGEIRPAVAQTSPNCSGA
SNQGPWMPCPSMVLDHLQE

>gi568815589f:124192941_124450944|GENSCAN_predicted_CDS_8|960_bp
atgcacacagggagaaccccatatgaagatgaaggtagacactggagtgatgatcctatg
ggccaaggaatgccaaaagttgccatcaaaccaccagaagctaggcgccaggtctggaac
agtctgcctcacggctctcagaagaagcaactttgcagacaccttgctttggacttgcac
cctccagaatggagcagcgagcagcaccagcggccacccgacgtcctgtatctccgctgt
caatctgcccgctgccctgggttgtttactggaagctggcctccctgcacaggttcaaag
ccctggccctgggcacgtctgcggcaggaagcaggccgggcagtaattggcggtgcggcc
atgctaagtggccagcaccgacccggtatcctcccccagcagtcgcctttgagtggctcc
atgctgaccttccaggcctgcggggacttcctgccgaacgccgagccagctccaggaaca
aattacttattccccaagaaatctattaaaaggaatccctccagctctcccccaactctt
ctcgccatcttcggcttcttcagttttcaccccactactcaggtgtccagaaaattccct
acacctggccagctcccggggcctgacagggtgcaggttccgtgtaaactttcagcaatc
atggagcagaatccctggaagtggcggcaggaggagaagcaggcaatgagcccgaggtcc
gcagtggctatcgcctacccacagcctgcaggctttgtccttggaaacaagcagcctgtc
aaagctgcccgctgtaaagtggatagatggctcttggctgccaactggacaatgcccagg
ctctgtggaggggagattaggccagccgtggcccaaaccagtcccaactgctccggggcc
tcaaatcagggtccatggatgccctgcccctccatggtacttgaccatcttcaggagtga