Result of FASTA (ccds) for pF1KB4689
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4689, 440 aa
  1>>>pF1KB4689 440 - 440 aa - 440 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5373+/-0.000942; mu= 0.9929+/- 0.057
 mean_var=300.5309+/-61.990, 0's: 0 Z-trim(115.0): 23  B-trim: 159 in 1/54
 Lambda= 0.073983
 statistics sampled from 15526 (15541) to 15526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.477), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9          ( 464) 2340 262.9 4.7e-70
CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9          ( 463) 2301 258.8 8.4e-69


>>CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9               (464 aa)
 initn: 3018 init1: 2340 opt: 2340  Z-score: 1371.2  bits: 262.9 E(32554): 4.7e-70
Smith-Waterman score: 2974; 94.8% identity (94.8% similar) in 464 aa overlap (1-440:1-464)

               10        20        30        40        50        60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
               70        80        90       100       110       120

                            120       130       140       150      
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
              130       140       150       160       170       180

        160       170       180       190       200       210      
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
              190       200       210       220       230       240

        220       230       240       250       260       270      
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
              250       260       270       280       290       300

        280       290       300       310       320       330      
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
              310       320       330       340       350       360

        340       350       360       370       380       390      
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
              370       380       390       400       410       420

        400       410       420       430       440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
              430       440       450       460    

>>CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9               (463 aa)
 initn: 3057 init1: 2301 opt: 2301  Z-score: 1348.7  bits: 258.8 E(32554): 8.4e-69
Smith-Waterman score: 2935; 94.6% identity (94.8% similar) in 459 aa overlap (1-435:1-459)

               10        20        30        40        50        60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
               70        80        90       100       110       120

                            120       130       140       150      
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
              130       140       150       160       170       180

        160       170       180       190       200       210      
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
              190       200       210       220       230       240

        220       230       240       250       260       270      
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
              250       260       270       280       290       300

        280       290       300       310       320       330      
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
              310       320       330       340       350       360

        340       350       360       370       380       390      
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
              370       380       390       400       410       420

        400       410       420       430       440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
       ::::::::::::::::::::::::::::::::::::::.     
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF 
              430       440       450       460    




440 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:22:22 2016 done: Thu Nov  3 15:22:22 2016
 Total Scan time:  2.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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