GENSCAN 1.0	Date run:  3-Nov-116	Time: 15:10:53

Sequence gi568815595r:12484517_12718721 : 234205 bp : 44.27% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   4684   4723   40                              -2.16
 1.01 Init +   5285   5473  189  1  0   65  106   197 0.625  18.21
 1.02 Intr +   7620   7701   82  2  1   57   98    23 0.456  -0.59
 1.03 Intr +  12608  12725  118  0  1  104   77    22 0.487   2.22
 1.04 Intr +  18746  19268  523  2  1   98  100   282 0.766  23.35
 1.05 Intr +  34543  34681  139  0  1   37  102   142 0.734  10.54
 1.06 Intr +  44372  44408   37  0  1  121   58    41 0.992   1.72
 1.07 Intr +  45246  45357  112  0  1  105   87    81 0.991  10.08
 1.08 Intr +  49743  49782   40  2  1   60   90    64 0.565   1.60
 1.09 Term +  49964  49974   11  0  2  102   39     7 0.422  -4.44
 1.10 PlyA +  51956  51961    6                               1.05

 2.03 PlyA -  52153  52148    6                               1.05
 2.02 Term -  55917  55677  241  2  1   74   54   283 0.991  19.00
 2.01 Init -  57417  57344   74  0  2   78   86    75 0.668   6.84
 2.00 Prom -  58649  58610   40                              -5.86

 3.00 Prom +  69979  70018   40                              -4.96
 3.01 Init +  72553  72716  164  0  2   75   78   117 0.790   6.62
 3.02 Intr +  78190  78378  189  1  0   60  101    76 0.793   4.80
 3.03 Intr +  84359  84481  123  2  0  109  -14    92 0.303   0.80
 3.04 Intr +  85555  85736  182  1  2   76   81    37 0.466   1.31
 3.05 Intr +  87553  87788  236  2  2   91   85   359 0.350  33.31
 3.06 Intr +  90276  90490  215  2  2   82   97   143 0.960  12.11
 3.07 Intr +  92115  92225  111  0  0   82   98    59 0.981   5.79
 3.08 Intr +  97292  97436  145  2  1  134   86    96 0.967  14.28
 3.09 Term +  97600  97737  138  0  0   66   43   206 0.999  11.86
 3.10 PlyA +  98830  98835    6                               1.05

 4.15 PlyA -  99106  99101    6                               1.05
 4.14 Term - 100141  99998  144  1  0   59   33   130 0.981   2.51
 4.13 Intr - 100465 100331  135  1  0   98  110    36 0.982   7.56
 4.12 Intr - 100737 100606  132  0  0   20  111   195 0.756  15.84
 4.11 Intr - 103121 102998  124  1  1  118  -22    13 0.093  -6.11
 4.10 Intr - 106458 106282  177  2  0  130   64   156 0.266  16.43
 4.09 Intr - 107276 107192   85  0  1   70  101    58 0.995   4.18
 4.08 Intr - 115292 115175  118  2  1   69  115    53 0.881   6.14
 4.07 Intr - 115763 115636  128  0  2   39   68    58 0.515  -0.70
 4.06 Intr - 115899 115872   28  0  1  113   80    35 0.829   2.89
 4.05 Intr - 119773 119620  154  0  1   82   75    52 0.745   3.37
 4.04 Intr - 124407 124250  158  0  2   90   61   184 0.846  14.71
 4.03 Intr - 124819 124717  103  0  1   63   78    60 0.818   2.68
 4.02 Intr - 127546 127434  113  1  2   87   90    39 0.807   3.18
 4.01 Init - 134205 133999  207  0  0   64   68   243 0.999  18.72
 4.00 Prom - 136784 136745   40                              -3.56

 5.00 Prom + 137132 137171   40                              -0.86
 5.01 Init + 154548 154686  139  2  1   39   72    89 0.430   2.70
 5.02 Intr + 154837 155239  403  2  1   52   49   187 0.012   4.69
 5.03 Intr + 179188 179370  183  1  0   56   76    62 0.091   0.70
 5.04 Term + 179578 179746  169  1  1   59   43   202 0.442  10.15
 5.05 PlyA + 180768 180773    6                               1.05

 6.04 PlyA - 183888 183883    6                               1.05
 6.03 Term - 215712 215664   49  2  1   67   55    68 0.098  -1.82
 6.02 Intr - 225668 225556  113  2  2   -9  107    93 0.350   0.68
 6.01 Init - 225856 225725  132  1  0   67   94   156 0.845  12.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 154837 155243  407  2  2   52   49   193 0.942   7.15


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:12484517_12718721|GENSCAN_predicted_peptide_1|416_aa
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQL
YGKGYFGKGILSRSRPSFTISDPKLVAKWKALFGVQHFPHVSYVGLDCRCLESRDQALLL
SAVPHFVVPWYQHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPPVKRNEEAQVHDKL
NSGMVSNMEGTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSVRED
ASPLPHVCCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAA
PNEEEPLTIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFY
HASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKCQKDSMTTTYGSKACG

>gi568815595r:12484517_12718721|GENSCAN_predicted_CDS_1|1251_bp
atggcagaagcagttttccatgccccaaagaggaaaagaagagtgtatgagacttacgag
tctccattgccaatcccttttggtcaggaccatggtcctctgaaagaattcaagatattc
cgtgctgaaatgattaacaacaatgtgattgtgaggaatgcggaggacattgagcagctc
tatgggaaaggttattttggaaaaggtattctttcaagaagccgtccaagcttcacaatt
tcagatcctaaactggttgctaaatggaaagccctcttcggcgtgcagcactttcctcat
gtgtcatacgtgggtttagactgtcggtgcttggagagcagagatcaggcccttctcctc
tctgcagtgccacactttgtggtcccttggtatcagcatagtgttgagtgggcagcagag
ctgatgcgtagacaggggcaggatgagagtacagtgcgcagaatcctcaaggattacacg
aaaccgcttgagcatcctcctgtgaaaaggaatgaagaggctcaagtgcatgacaagctt
aactctggaatggtttccaacatggaaggcacagcagggggagagagaccttctgtggta
aacggggactctggaaagtcaggtggtgtgggtgatccccgtgagccattaggctgcctg
caggagggctctggctgccacccaacaacagagagctttgagaaaagcgtgcgagaggat
gcctcacctctgccccatgtctgttgctgcaaacaagatgctctcatcctccagcgtggc
cttcatcatgaagacggcagccagcacatcggcctcctgcatcctggggacagagggcct
gaccatgagtacgtgctggtcgaggaagcggagtgtgccatgagcgagagggaggctgcc
ccaaatgaggaagagcctttaacgatagtgaagctctggaaagctttcactgtagttcag
cccacgttcagaaccacctacatggcctaccattactttcgaagcaagggctgggtgccc
aaagtgggactcaagtacgggacagatttactgctatatcggaaaggccctccattttac
catgcaagttattctgtcattatcgagctagttgatgaccattttgaaggctctctccgc
aggcctctcagttggaagtccctggctgccttgagcagagtttccgttaatgtctctaag
tgtcagaaagattccatgacgaccacctatggatccaaggcatgtggctaa

>gi568815595r:12484517_12718721|GENSCAN_predicted_peptide_2|104_aa
MYGMMEQWDKYLEDFSTSGAWLPHRYEDNHHNCYSYALTFINCVLMAEGRQQLDKGEFTE
KYVVPRTRLASKFITLYRAIREHGFYVTDCPQQQAQPPEGGGLC

>gi568815595r:12484517_12718721|GENSCAN_predicted_CDS_2|315_bp
atgtatggaatgatggagcaatgggacaagtacctggaagacttctccacctcgggggcc
tggctgcctcacaggtatgaagacaaccaccataactgctactcttacgcactcacgttc
attaactgcgttctgatggcagaaggtagacagcaactggacaagggtgaatttacggag
aagtacgtggtcccgcggacaaggctggcatccaagttcatcacactctaccgggcgata
cgggagcatggcttctacgtcactgactgtccccagcagcaggcacaaccccctgagggc
ggcggtttgtgctga

>gi568815595r:12484517_12718721|GENSCAN_predicted_peptide_3|500_aa
MGRARAKAEAAAAARGGGTTTVPQPSHHEHQADHLQVSALEPGASGRSPRPQGGRSAAAL
DSNRSTNPIVSCACEGSTLCASYENLMPDELSLSPMTPRWDHLVAEKQAQCSTDSTLWYF
MHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRYDHTRPSAAAGGAVGTMAHSV
PSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSC
SDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEIC
MLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRC
AKQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGT
CPFGSKCLYRHAYPDGRLAEPEKPRKQLSSQGTVRFFNSVRLWDFIENRESRHVPNNEDV
DMTELGDLFMHLSGVESSEP

>gi568815595r:12484517_12718721|GENSCAN_predicted_CDS_3|1503_bp
atgggccgggccagggccaaggccgaggcggcagcggctgcgagaggcggcggcacgacg
acggtccctcagcccagccaccatgagcaccaagcagatcacttgcaggtcagtgcgctg
gagccaggagcttcgggccgctcccccaggccgcaggggggccgatcagcagcagcatta
gattctaatagaagcactaaccctattgtcagctgtgcatgtgagggatctacgttgtgt
gcttcttatgagaatctaatgcctgatgaactgtcactgtctcccatgacccccagatgg
gaccatctagttgcagaaaaacaagctcagtgttccactgattctacactatggtatttt
atgcatggtgtgtgtcgggaaggaagtcagtgcctattctcacatgacttggcaaacagc
aaaccgtccaccatctgcaagtactaccagaagggctactgtgcctatggaactcgatat
gaccacacgaggccctctgctgcagctggaggtgctgtgggcaccatggcccacagtgtg
ccctccccagctttccacagtcctcaccctccttccgaggtcactgcatccattgtgaaa
actaactcacatgaacccggaaagcgtgaaaagagaacattggttcttagagaccgaaat
ctctctggcatggctgaaaggaagacccagccgagcatggtgagtaatccaggcagctgc
agcgacccccagcccagccccgagatgaagccgcattcctacctggatgccatcaggagt
ggccttgatgacgtggaggccagcagctcctacagcaacgagcagcagctgtgcccctac
gcagctgctggggagtgccggtttggggatgcctgtgtctacctgcacggggagatctgc
atgttgacgttcgaacacgagatggaaaaggcctttgccttccaggcaagccaggacaaa
gtgtgcagtatctgcatggaagtgatcctggagaaggcctctgcttctgagaggagattt
gggattctctccaattgcaatcacacgtactgtttgtcctgcatccggcagtggcggtgt
gccaaacagtttgaaaacccaatcattaagtcttgtccagaatgccgtgtgatatcagag
tttgtaattccaagtgtgtattgggtggaagatcagaataaaaagaacgagttgattgaa
gctttcaaacaggggatggggaaaaaagcctgtaaatactttgagcaaggcaaggggacc
tgcccatttggaagcaaatgtctttatcgccatgcttaccccgatgggcggctagcagag
cctgagaaacctcggaaacagctcagttctcaaggcactgtgaggttctttaattcagtg
cggctctgggatttcatcgagaaccgagaaagccggcatgtccccaacaatgaagatgtc
gacatgacagagctcggggacctcttcatgcacctttctggagtggaatcatcagaaccc
taa

>gi568815595r:12484517_12718721|GENSCAN_predicted_peptide_4|601_aa
MEHIQGAWKTISNGFGFKDAVFDGSSCISPTIVQQFGYQRRASDDGKLTDPSKTSNTIRV
FLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAAS
LIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKV
PTMCVDWSNIRQLFSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLPVD
SRMIEDAIRSHSESASPSALSSSPNNLSPTGWSQPKTPVPAQRERAPVSGTQEKNKIRPR
GQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNE
VAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTA
QGMDYLHAKNIIHRDMKSNSILWLLSSFDCSVLNLGKQKGGFLSQAPEVIRMQDNNPFSF
QSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVAD
CVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPV
F

>gi568815595r:12484517_12718721|GENSCAN_predicted_CDS_4|1806_bp
atggagcacatacagggagcttggaagacgatcagcaatggttttggattcaaagatgcc
gtgtttgatggctccagctgcatctctcctacaatagttcagcagtttggctatcagcgc
cgggcatcagatgatggcaaactcacagatccttctaagacaagcaacactatccgtgtt
ttcttgccgaacaagcaaagaacagtggtcaatgtgcgaaatggaatgagcttgcatgac
tgccttatgaaagcactcaaggtgaggggcctgcaaccagagtgctgtgcagtgttcaga
cttctccacgaacacaaaggtaaaaaagcacgcttagattggaatactgatgctgcgtct
ttgattggagaagaacttcaagtagatttcctggatcatgttcccctcacaacacacaac
tttgctcggaagacgttcctgaagcttgccttctgtgacatctgtcagaaattcctgctc
aatggatttcgatgtcagacttgtggctacaaatttcatgagcactgtagcaccaaagta
cctactatgtgtgtggactggagtaacatcagacaactcttttctcagcacagatattct
acacctcacgccttcacctttaacacctccagtccctcatctgaaggttccctctcccag
aggcagaggtcgacatccacacctaatgtccacatggtcagcaccaccctgcctgtggac
agcaggatgattgaggatgcaattcgaagtcacagcgaatcagcctcaccttcagccctg
tccagtagccccaacaatctgagcccaacaggctggtcacagccgaaaacccccgtgcca
gcacaaagagagcgggcaccagtatctgggacccaggagaaaaacaaaattaggcctcgt
ggacagagagattcaagctattattgggaaatagaagccagtgaagtgatgctgtccact
cggattgggtcaggctcttttggaactgtttataagggtaaatggcacggagatgttgca
gtaaagatcctaaaggttgtcgacccaaccccagagcaattccaggccttcaggaatgag
gtggctgttctgcgcaaaacacggcatgtgaacattctgcttttcatggggtacatgaca
aaggacaacctggcaattgtgacccagtggtgcgagggcagcagcctctacaaacacctg
catgtccaggagaccaagtttcagatgttccagctaattgacattgcccggcagacggct
cagggaatggactatttgcatgcaaagaacatcatccatagagacatgaaatccaacagt
atcctttggttgttgagttcatttgactgctcggttctaaatttagggaaacagaaggga
ggctttctatcacaagccccagaggtgatccgaatgcaggataacaacccattcagtttc
cagtcggatgtctactcctatggcatcgtattgtatgaactgatgacgggggagcttcct
tattctcacatcaacaaccgagatcagatcatcttcatggtgggccgaggatatgcctcc
ccagatcttagtaagctatataagaactgccccaaagcaatgaagaggctggtagctgac
tgtgtgaagaaagtaaaggaagagaggcctctttttccccagatcctgtcttccattgag
ctgctccaacactctctaccgaagatcaaccggagcgcttccgagccatccttgcatcgg
gcagcccacactgaggatatcaatgcttgcacgctgaccacgtccccgaggctgcctgtc
ttctag

>gi568815595r:12484517_12718721|GENSCAN_predicted_peptide_5|297_aa
MQGWFNIHNPSYKQNQNQNYVIISIDAEKAFNKIQQPFMLKTLNKPVSEVLARAIRQEKE
IKGIQLGKEEVKLSLFADDMIVYLENLIVSAQNLLKLTGNFSKVSGYKINVQKSQAFLYT
NNRQTESQIMSELSFTIASKRIKYLGIRLTRDVKDLFKENYKPLLNKIKEDTNGRTFHAH
GRGAAPSAPPRPGRPGSRSLSPAARLPRHPRPGPATYLREPGRPNVLSFGGSFSPAPPPR
GGWRPKRPRLRLSGGPDERALDSVLVLPTCDATGSPILREPYWQSTSNLARASIALA

>gi568815595r:12484517_12718721|GENSCAN_predicted_CDS_5|894_bp
atgcaaggctggttcaacatacataatccatcatataaacagaaccaaaatcaaaactac
gtgattatctcaatagatgcagaaaaggccttcaacaaaattcaacagcccttcatgcta
aaaactctcaataaaccagtgtcggaagttctggccagagcaatcaggcaagagaaagaa
ataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatg
attgtatatttagaaaacctcatcgtctcagcccaaaatctccttaagctgacaggcaac
ttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcccaagcattcctatacacc
aataacagacaaacagagagccaaatcatgagtgaactctcattcacaattgcttcaaag
agaataaaatacctaggaatccgacttacaagggatgtgaaggacctcttcaaggagaac
tacaaaccactgctcaacaaaataaaagaggacacaaatggaagaacattccatgctcat
ggccgcggggccgctccatcagcgccacccaggcccggtcgccctggaagccgatccctc
agccccgccgcccggctcccccggcatccacgacccggtcctgccacctacctgagggag
ccaggccgccccaacgtcctgtcgttcggcggcagcttctcgcccgctcctcctccccgc
ggcggatggcggcccaagcgcccgcgattaagactctcgggcggcccagacgagcgagcc
ctcgactcggtgctcgtcctcccgacctgcgacgccaccggctctccgattctgcgcgag
ccctactggcagtcgacttctaacttggctcgggcatccatcgctctggcctga

>gi568815595r:12484517_12718721|GENSCAN_predicted_peptide_6|97_aa
MVAKTPMSSPSVTPACLLRLTLAAAFGLPYDQPANRKKAKLDPQPHSAGTLKDTNEKESS
QQAELWAVHMLNHFVAKRNNLRPPGSTSGSYRKVTVG

>gi568815595r:12484517_12718721|GENSCAN_predicted_CDS_6|294_bp
atggtggccaagacccccatgtcatcccccagtgtgacacctgcatgcctccttcggctc
accctggcagctgcttttgggctcccttatgaccagccagcaaacaggaaaaaggccaag
cttgatccacagcctcactcagcagggacccttaaagacactaatgagaaggaatcttcc
caacaggccgaactttgggcagtgcacatgctcaaccacttcgtggccaagagaaataac
ctgagacctccagggtcaactagtgggtcctaccgcaaggtcactgttggctga