GENSCAN 1.0	Date run:  3-Nov-116	Time: 14:53:50

Sequence gi568815596f:46246871_46484657 : 237787 bp : 44.35% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    672    667    6                               1.05
 1.04 Term -   5410   5291  120  1  0   64   48    75 0.863  -0.43
 1.03 Intr -   6391   6309   83  2  2  143   99    49 0.982  10.86
 1.02 Intr -   6641   6512  130  2  1   44   72    67 0.874   0.97
 1.01 Init -  12208  12173   36  1  0   84   81    19 0.493   0.93
 1.00 Prom -  12429  12390   40                              -2.96

 2.00 Prom +  13467  13506   40                              -5.56
 2.01 Init +  14658  14691   34  2  1   20  100    31 0.861  -2.47
 2.02 Term +  15388  15557  170  2  2   71   42   157 0.829   7.44
 2.03 PlyA +  17301  17306    6                               1.05

 3.00 Prom +  27917  27956   40                              -2.46
 3.01 Init +  49716  49855  140  2  2   78  119    66 0.853   8.31
 3.02 Intr +  52061  52191  131  2  2   62   64    71 0.761   2.44
 3.03 Term +  52861  53084  224  2  2   42   49   227 0.978  11.28
 3.04 PlyA +  53598  53603    6                               1.05

 4.00 Prom +  60553  60592   40                              -4.96
 4.01 Init +  64918  64984   67  0  1   81   93    90 0.937  10.03
 4.02 Term +  75373  75440   68  2  2   88   46    58 0.183  -0.30
 4.03 PlyA +  76448  76453    6                               1.05

 5.00 Prom +  77879  77918   40                              -5.66
 5.01 Init +  81417  81423    7  2  1  104  110     5 0.635   5.12
 5.02 Term +  82436  82566  131  0  2   74   53   114 0.849   4.84
 5.03 PlyA +  84465  84470    6                               1.05

 6.00 Prom +  95139  95178   40                              -3.36
 6.01 Init +  98598  98663   66  2  0   60   99   -18 0.339  -2.36
 6.02 Intr +  99778  99893  116  0  2   99   66    20 0.493   0.15
 6.03 Intr + 100114 100193   80  1  2   79  110   108 0.002  11.29
 6.04 Intr + 106743 106886  144  1  0   49   69    75 0.666   1.95
 6.05 Intr + 109281 109432  152  1  2   86   61   228 0.999  19.78
 6.06 Intr + 109854 109938   85  2  1   80   23    85 0.614   0.59
 6.07 Intr + 113768 113886  119  0  2   71   97   131 0.643  12.48
 6.08 Intr + 114015 114220  206  2  2   90   91   280 0.990  26.50
 6.09 Intr + 122957 123063  107  2  2   39   74   125 0.613   6.06
 6.10 Intr + 128820 128967  148  1  1  125   99   262 0.999  30.29
 6.11 Intr + 129669 129883  215  0  2   48   72   304 0.999  23.16
 6.12 Intr + 130581 130649   69  1  0   50   50   106 0.815   2.15
 6.13 Intr + 131024 131217  194  0  2  107  101   212 0.990  23.61
 6.14 Intr + 131787 131924  138  2  0  103   61   235 0.549  22.96
 6.15 Intr + 133357 133847  491  0  2  106  115   369 0.999  33.20
 6.16 Intr + 134726 134852  127  2  1   80   84   226 0.999  22.08
 6.17 Intr + 135105 135219  115  2  1   95   89    54 0.756   6.22
 6.18 Intr + 135555 135728  174  1  0   80   94   131 0.758  12.81
 6.19 Term + 137639 137790  152  0  2   76   52   186 0.999  11.87
 6.20 PlyA + 145332 145337    6                               1.05

 7.00 Prom + 152259 152298   40                              -7.26
 7.01 Init + 156176 156247   72  1  0   88   47    80 0.594   4.97
 7.02 Intr + 163629 163802  174  2  0   68   71    77 0.800   4.14
 7.03 Term + 163858 163929   72  0  0  101   42    87 0.981   3.31
 7.04 PlyA + 165862 165867    6                               1.05

 8.00 Prom + 175349 175388   40                              -3.06
 8.01 Init + 186231 186287   57  2  0   64   64    61 0.399   2.61
 8.02 Intr + 213454 213574  121  0  1  113   73    50 0.217   6.07
 8.03 Term + 213760 213896  137  2  2    8   47   108 0.106  -3.12
 8.04 PlyA + 216099 216104    6                               1.05

 9.02 PlyA - 217975 217970    6                               1.05
 9.01 Sngl - 228794 227850  945  2  0   49   44   286 0.911  16.86
 9.00 Prom - 228887 228848   40                              -4.96

10.00 Prom + 232250 232289   40                              -6.66
10.01 Init + 232785 232832   48  2  0   93   95    10 0.647   3.15
10.02 Intr + 233535 233894  360  2  0   78   68   495 0.987  41.92
10.03 Intr + 237374 237562  189  1  0  108  -10   203 0.544  12.28

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  51042  51067   26  2  2   80  121    56 0.922   7.10
S.002 Intr + 100003 100193  191  1  2   78  110   197 0.996  20.13


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_1|122_aa
MVEGKGEQACYMGKQQLLFLLGEISTSEGVAQKGIIADEDILGSSQSSVGTDGLHSIAPI
TLTESSGKCEKSLNKELPWGNGQLDAERHMDAHDSLTHGMPAYFSMAPNRQFSMLSFPVN
TS

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_1|369_bp
atggtggaaggcaaaggggagcaggcgtgttacatgggcaaacagcagctgcttttcctc
ctgggggaaatcagtacttcagagggagtggctcagaagggcataattgctgatgaggac
attttgggtagctcccagagctctgtggggacagacggccttcacagcatagcacccatc
acactgactgagtcatccggaaaatgtgagaaatcacttaataaagagctgccctgggga
aatggacagctggatgcagaaagacacatggacgcacatgattcattaacgcacggcatg
cctgcctacttctctatggcaccaaatcggcagttctcaatgctgagcttcccagttaat
acttcttga

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_2|67_aa
MKDKEGKRTLKGSYTRGMGAEFGQKSFDGGEFYSKLYTGKEKVLDQKPSETYRAGWVANV
ANQTSMT

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_2|204_bp
atgaaagacaaagagggcaagagaactcttaaaggttcttacacccgtggtatgggagca
gaatttggacagaaaagctttgatggtggagaattttacagcaagctctatacagggaag
gagaaggttctggaccaaaagccctcagaaacctatagagcaggttgggttgccaatgtg
gccaaccaaaccagcatgacctaa

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_3|164_aa
MANSCHSKITLGNQTDFSNSELAPASGGSKGLLCRIPAKTKPPGTSRGLELPAPRLAAAW
RGYAAGSWNPTRGRLNRLSRGKPAAERRYRVLYRIYRETWEQGKNDFDTPSYSTWFVSGL
LEREKKREWEREERCVIRLPIIGESGRFKNHCGDCLRNALEAAV

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_3|495_bp
atggccaactcttgtcactccaagatcacactggggaaccagactgacttctccaattct
gaactcgccccggcctcgggcggctcaaagggcctcctctgccgcatccccgccaaaacc
aaaccgcctggcacaagccgtggcctggagcttccagccccgcgcttggccgcggcttgg
cgaggctatgctgcgggaagctggaatccaacgcgcggccggctgaaccgcctgagccgc
gggaaaccagcggcggagcggcggtatagagttttgtaccgtatataccgagaaacttgg
gagcaggggaaaaatgatttcgacacacccagctacagtacctggttcgttagcggactg
ttggaaagagagaagaagcgggaatgggagcgggaagaacgttgcgtaattagactccca
attattggcgagagcggccgctttaagaaccactgtggggactgcctgcgaaacgccttg
gaggccgctgtgtga

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_4|44_aa
MGTPEGGVVTVAASQPKALGKPGSYAGSSYFYKKKKLECIEHLL

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_4|135_bp
atgggcacacctgagggtggtgtggtcactgtggccgccagccagcccaaggccttggga
aagcctggttcttatgctggcagctcatatttttacaagaaaaagaagttagaatgtatt
gagcacctgctataa

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_5|45_aa
MAGLSTYADSPCKTGGERVGYPIYGKGRPMEKQEDGQGKLAAKRQ

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_5|138_bp
atggcaggactcagcacctatgccgacagtccttgcaagacaggaggggaacgtgtaggc
tatcctatttatggtaaggggaggcctatggaaaaacaggaagatggtcaagggaagctg
gcagcaaaaaggcaatga

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_6|965_aa
MILGPTFPVQSPTSPFTCWRPQGMQEEDFGCEDTNTHKSRANNTKQVVCGSDNWCEPRSV
YVSSHLDKASIMRLAISFLRTHKLLSSAPVQMKILAGKANIHSGIAHTWDIASSLQRADE
LAENRCISRNPKQGSVCSENESEAEADQQMDNLYLKALEGFIAVVTQDGDMIFLSENISK
FMGLTQVELTGHSIFDFTHPCDHEEIRENLSLKNGSGFGKKSKDMSTERDFFMRMKCTVT
NRGRTVNLKSATWKVLHCTGQVKVYNNCPPHNSLCGYKEPLLSCLIIMCEPIQHPSHMDI
PLDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLC
TKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVVFSMD
QTESLFKPHLMAMNSIFDSSGKGAVSEKSNFLFTKLKEEPEELAQLAPTPGDAIISLDFD
GFYSGHVRIAAKENLKRSGPLARNQNFEESSAYGKAILPPSQPWATELRSHSTQSEAGSL
PAFTVPQAAAPGSTTPSATSSSSSCSTPNSPEDYYTSLDNDLKIEVIEKLFAMDTEAKDQ
CSTQVDGCGDQARTDFNELDLETLAPYIPMDGEDFQLSPICPEERLLAENPQSTPQHCFS
AMTNIFQPLAPVAPHSPFLLDKFQQQLESKKTEPEHRPMSSIFFDAGSKASLPPCCGQAS
TPLSSMGGRSNTQWPPDPPLHFGPTKWAVGDQRTEFLGAAPLGPPVSPPHVSTFKTRSAK
GFGARGPDVLSPAMVALSNKLKLKRQLEYEEQAFQDLSGGDPPGGSTSHLMWKRMKNLRG
GSCPLMPDKPLSANVPNDKFTQNPMRGLGHPLRHLPLPQPPSAISPGENSKSRFPPQCYA
TQYQDYSLSSAHKVSGMASRLLGPSFESYLLPELTRYDCEVNVPVLGSSTLLQGGDLLRA
LDQAT

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_6|2898_bp
atgattctggggcccaccttcccagtgcaaagcccgacttccccatttacctgctggagg
ccacagggaatgcaagaggaggactttggttgtgaagacaccaacacacacaaaagcaga
gctaacaatacaaagcaggttgtgtgtggctcagacaactggtgtgagcccagatcagtc
tatgtgagctcccatctggacaaggcctccatcatgcgactggcaatcagcttcctgcga
acacacaagctcctctcctcagcccctgttcaaatgaagattttagctgggaaagctaac
attcacagtggcatcgcccacacctgggacattgcatcatcgcttcagcgggctgatgag
ctggcagagaacaggtgtatcagcagaaaccccaagcagggatcagtttgctctgaaaac
gagtccgaagccgaagctgaccagcagatggacaacttgtacctgaaagccttggagggt
ttcattgccgtggtgacccaagatggcgacatgatctttctgtcagaaaacatcagcaag
ttcatgggacttacacaggtggagctaacaggacatagtatctttgacttcactcatccc
tgcgaccatgaggagattcgtgagaacctgagtctcaaaaatggctctggttttgggaaa
aaaagcaaagacatgtccacagagcgggacttcttcatgaggatgaagtgcacggtcacc
aacagaggccgtactgtcaacctcaagtcagccacctggaaggtcttgcactgcacgggc
caggtgaaagtctacaacaactgccctcctcacaatagtctgtgtggctacaaggagccc
ctgctgtcctgcctcatcatcatgtgtgaaccaatccagcacccatcccacatggacatc
cccctggatagcaagaccttcctgagccgccacagcatggacatgaagttcacctactgt
gatgacagaatcacagaactgattggttaccaccctgaggagctgcttggccgctcagcc
tatgaattctaccatgcgctagactccgagaacatgaccaagagtcaccagaacttgtgc
accaagggtcaggtagtaagtggccagtaccggatgctcgcaaagcatgggggctacgtg
tggctggagacccaggggacggtcatctacaaccctcgcaacctgcagccccagtgcatc
atgtgtgtcaactacgtcctgagtgagattgagaagaatgacgtggtgttctccatggac
cagactgaatccctgttcaagccccacctgatggccatgaacagcatctttgatagcagt
ggcaagggggctgtgtctgagaagagtaacttcctattcaccaagctaaaggaggagccc
gaggagctggcccagctggctcccaccccaggagacgccatcatctctctggatttcgat
gggttctacagcggccacgtgaggattgcagctaaagagaatctgaaacgcagcgggccc
ttggccaggaatcagaacttcgaggagtcctcagcctatggcaaggccatcctgcccccg
agccagccatgggccacggagttgaggagccacagcacccagagcgaggctgggagcctg
cctgccttcaccgtgccccaggcagctgccccgggcagcaccacccccagtgccaccagc
agcagcagcagctgctccacgcccaatagccctgaagactattacacatctttggataac
gacctgaagattgaagtgattgagaagctcttcgccatggacacagaggccaaggaccaa
tgcagtacccaggtagatggctgtggagatcaggctaggacggatttcaatgagctggac
ttggagacactggcaccctatatccccatggacggggaagacttccagctaagccccatc
tgccccgaggagcggctcttggcggagaacccacagtccaccccccagcactgcttcagt
gccatgacaaacatcttccagccactggcccctgtagccccgcacagtcccttcctcctg
gacaagtttcagcagcagctggagagcaagaagacagagcccgagcaccggcccatgtcc
tccatcttctttgatgccggaagcaaagcatccctgccaccgtgctgtggccaggccagc
acccctctctcttccatggggggcagatccaatacccagtggcccccagatccaccatta
cattttgggcccacaaagtgggccgtcggggatcagcgcacagagttcttgggagcagcg
ccgttggggccccctgtctctccaccccatgtctccaccttcaagacaaggtctgcaaag
ggttttggggctcgaggcccagacgtgctgagtccggccatggtagccctctccaacaag
ctgaagctgaagcgacagctggagtatgaagagcaagccttccaggacctgagcgggggg
gacccacctggtggcagcacctcacatttgatgtggaaacggatgaagaacctcaggggt
gggagctgccctttgatgccggacaagccactgagcgcaaatgtacccaatgataagttc
acccaaaaccccatgaggggcctgggccatcccctgagacatctgccgctgccacagcct
ccatctgccatcagtcccggggagaacagcaagagcaggttccccccacagtgctacgcc
acccagtaccaggactacagcctgtcgtcagcccacaaggtgtcaggcatggcaagccgg
ctgctcgggccctcatttgagtcctacctgctgcccgaactgaccagatatgactgtgag
gtgaacgtgcccgtgctgggaagctccacgctcctgcaaggaggggacctcctcagagcc
ctggaccaggccacctga

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_7|105_aa
MKQLELSDITGGGENWHNHWGKLNLSMCWPIAYAVPRTGAQDQVEPSWSAGKTNAENVSL
PNIPEYLFRASPDPGPEDTDVKKHKGSCVDVATLAPLDEVGQRDG

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_7|318_bp
atgaagcaactggagctctcagatattactggtggaggtgaaaattggcacaaccactgg
gggaagctgaacctgagcatgtgttggccaatagcctatgctgtacccagaacgggtgcc
caggatcaagtggaaccttcctggtcagctgggaagacaaatgctgagaacgtttcttta
ccaaacattcctgagtacctcttcagggccagccctgatccaggccctgaggatacagat
gtgaagaaacacaagggcagctgtgttgatgtagccacgctggccccattagatgaagtt
ggacagagggatggatga

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_8|104_aa
MSGIKSCGPESGNSAICCLCQRQKSQGTEEEEVAAAGGGNNRPSLRTSLTHGPKTLRKSS
QTEATAIVVYFCYHVDSGESNAICQMVQENTVTRPSKQGAFVHG

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_8|315_bp
atgtctggcatcaagtcatgtggacccgagagcggaaacagtgctatctgctgcttgtgc
cagaggcagaagagccagggcactgaagaggaggaggtggcagcagcagggggagggaac
aacaggccatcattgaggacgtcactcactcacggtccaaagaccctgaggaaaagcagt
cagactgaggcaactgccatcgttgtatatttctgttatcacgttgactcgggggagtcc
aacgccatttgtcagatggtgcaggaaaacacagtaaccaggccttcaaaacagggcgcc
tttgtccacggctga

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_9|314_aa
MGDFNIPLSTLDRLMRQKVNKDIQELNSALHQADLIDIYRTLHPKSTEYTLFSALHRTYS
KTDHIVGSQALLSKCKRTEIITNCLSDHNAIKLELRIKKLTQNRSATWKLNNLLLNDYWV
HNEMKAEIKMFFETNENKDTTHQNLWHIFKAVCRGKFIALNAHKRKHERSKIDTLTSELK
ELEKQEQTHSKASRRQEINEIRAELKEKETQKTLQKVNESRSWFFEKINKIDRVLVRLIK
KKREKTQIDTIKNDKGATTTDPTEIQTIIREYYKHLYGNKLENLEEMDKFLNTYILPRLN
QEEVESLNRTINRL

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_9|945_bp
atgggagactttaacatcccactgtcaactttagacagattaatgagacagaaagttaac
aaggatatccaggaattgaactcagctctgcaccaagcagacttaatagacatctacaga
actctccaccccaaatcaacagaatacactttgttctcagcactacatcgtacctattcc
aaaactgaccacatagttggaagtcaagcactcctcagcaaatgtaaaagaacagaaatt
ataacaaactgtctctcagaccacaatgcaatcaaactagaactcaggattaagaaactc
actcaaaaccgctcagctacatggaaactgaacaacttgctcctgaatgactactgggta
cataatgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacaca
acacaccagaatctctggcacatattcaaagcagtgtgtagagggaaatttatagcacta
aatgcccacaagagaaagcacgaaagatctaaaattgacaccctaacatcagaattaaaa
gaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataaatgag
atcagagcagaactgaaggagaaagagacacaaaaaacccttcaaaaagtcaatgaatcc
aggagctggttttttgaaaagatcaacaaaattgatagagtgctagtaagactaataaag
aagaaaagagagaagactcaaatagacacaataaaaaatgataaaggggctaccaccacc
gatcccacagaaatacaaactatcatcagagagtactataaacacctctatggaaataaa
ctagaaaatctagaagaaatggataaattcctgaacacatatatcctcccaagactaaac
caggaagaagttgaatccctgaatagaacaattaacaggctctga

>gi568815596f:46246871_46484657|GENSCAN_predicted_peptide_10|199_aa
MVPGDSKSEGKPRAYLEAESQKPDSSYDYLEEMEACEDGGCQGPLKSLSPKSCRATKGQA
GDGPKPAELPPTPGTERNPEMELEKVRMEFELTRLKYLHEKNQRQRQHEVVMEQLQRERQ
HEVVMEQLQQEAAPRLFSGGLQNFLLPQNQFAMFLYCFIFIHIIYVTKEMVFFLFAKHYL
FCIAAILLCLIKTFWSYFQ

>gi568815596f:46246871_46484657|GENSCAN_predicted_CDS_10|597_bp
atggtgcctggtgactccaagtctgaagggaagccaagggcttatctggaggcagagtcc
cagaagccagactcctcctatgactacttggaagagatggaagcttgtgaggacggaggc
tgccaagggccgcttaaatcgctgtcccccaagtcctgccgtgctaccaaaggccaggct
ggcgacggacccaaacccgcagagctgcccccgacccctgggactgagcgcaatcccgag
atggagctggagaaggtgcgcatggagttcgagctcacgcggctcaagtacctgcatgag
aagaaccagcggcagcggcagcacgaggtggtgatggagcagctgcagcgggagcggcag
cacgaggtggtgatggagcagctgcagcaagaggcggcgccccgcctgttttcaggaggc
ctccagaacttcctgctgccccagaaccagtttgccatgttcctgtactgcttcatcttc
attcacatcatctatgtcaccaaggagatggtcttctttctcttcgccaagcactaccta
ttctgcattgcagccattttgctctgtttgattaaaactttctggtcatacttccaa