GENSCAN 1.0	Date run:  3-Nov-116	Time: 14:23:25

Sequence gi568815588r:43286640_43487884 : 201245 bp : 48.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   4952   4991   40                              -2.46
 1.01 Init +   7547   7751  205  1  1   93   72    74 0.733   5.31
 1.02 Intr +   8287   8474  188  2  2   92   12   111 0.770   3.31
 1.03 Intr +   9080   9120   41  1  2  115   31    48 0.019  -1.18
 1.04 Intr +  26116  26236  121  1  1  148   86   -13 0.031   5.00
 1.05 Intr +  28124  28197   74  1  2   40   44    68 0.025  -4.20
 1.06 Intr +  30974  31035   62  2  2  102   65    52 0.316   2.68
 1.07 Intr +  31822  31956  135  2  0   63   86    56 0.424   3.44
 1.08 Intr +  32964  33018   55  1  1  101   37    96 0.356   3.84
 1.09 Intr +  46184  46314  131  2  2   89   37    71 0.273   2.44
 1.10 Intr +  46552  46581   30  2  0  108   62    47 0.181   2.20
 1.11 Intr +  51473  51505   33  0  0   76   70    50 0.067   0.19
 1.12 Intr +  56790  56879   90  1  0   84   62    39 0.078   0.87
 1.13 Term +  75980  76044   65  0  2  110   48    32 0.034  -0.55
 1.14 PlyA +  77675  77680    6                               1.05

 2.00 Prom +  83923  83962   40                              -4.36
 2.01 Init +  84941  85030   90  1  0   87   99    22 0.486   2.85
 2.02 Intr +  86088  86133   46  2  1   95  111    23 0.377   3.28
 2.03 Intr +  87831  87863   33  1  0   95   97    34 0.900   3.19
 2.04 Intr +  88860  88934   75  1  0   72   61    89 0.903   4.09
 2.05 Intr +  89056  89095   40  2  1  123   99    49 0.949   6.78
 2.06 Intr +  89393  89430   38  2  2   70   94    41 0.695   0.81
 2.07 Intr +  97381  97464   84  2  0   45  101    79 0.569   4.69
 2.08 Term +  98394  98521  128  1  2   31   45   124 0.609   0.84
 2.09 PlyA +  98704  98709    6                               1.05

 3.02 PlyA -  99229  99224    6                               1.05
 3.01 Sngl - 101242  99998 1245  1  0   68   29  1283 0.614 116.24
 3.00 Prom - 117092 117053   40                              -1.76

 4.04 PlyA - 119147 119142    6                               1.05
 4.03 Term - 120984 120517  468  0  0   39   48   195 0.841   5.57
 4.02 Intr - 122708 122492  217  1  1  133   81   117 0.624  14.01
 4.01 Init - 137007 136979   29  0  2   67   79    -6 0.034  -4.30
 4.00 Prom - 143168 143129   40                              -2.96

 5.00 Prom + 147406 147445   40                              -6.16
 5.01 Init + 150195 150496  302  2  2  103   81   162 0.075  13.93
 5.02 Intr + 184571 184745  175  2  1   91    8   107 0.013   2.94
 5.03 Intr + 189082 189208  127  0  1   27   82   143 0.977   7.85
 5.04 Intr + 189468 189563   96  1  0   94   95    42 0.953   5.48
 5.05 Intr + 194790 195210  421  1  1   77  -11   172 0.479  -0.80
 5.06 Intr + 195745 196028  284  1  2   89   56   234 0.496  17.36
 5.07 Term + 196242 196543  302  1  2   30   43   236 0.001   8.68
 5.08 PlyA + 200389 200394    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 169214 168977  238  1  1   50   44   181 0.881   5.54
S.002 Term + 196095 196543  449  1  2   11   43   349 0.979  18.08


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:43286640_43487884|GENSCAN_predicted_peptide_1|409_aa
MPYSPLDPGNTCEQQPLGLDSRSCPSCGRLAHSPKVPDPRGRDRNGEVWVCPATRIGTSF
LILETGSGGRAGLQGTLASSPAGLSPEIPPEDCSNPELLLAWPHSSVEPLLSSSQGSEEG
PKRRVDSQPWREGVNPYIRRPRETKMDPRGQTLLRRMVAEGQGRDVWETMKSGLGSFNVG
LVRIRTLEEAAQIRPGASHDQTGGRRPGNCDGCSLRQCHLLFMQHVAAPSDTKLRKAPRL
AAWLYTQTILVLHDSQIPHLTARDGSHMRQALEITGLIIIAKEKPHVFKKSLWWQWSMKA
STTNKATTAQCLCNTQIKPPPPFSMSSQCSDIAKSNAGLLDFRQKLPVSRSTLRETPKGQ
CCGGVAKSPNQQVGTGNNTSNKNQHRTAGPKAPCAKGPVPSLPYTRESA

>gi568815588r:43286640_43487884|GENSCAN_predicted_CDS_1|1230_bp
atgccctacagtcctctggatccagggaacacctgtgagcaacagcctctgggcttggac
agccgatcctgcccctcatgtggacggctggcccactcccccaaagtccccgatcctaga
gggagagacagaaatggggaggtctgggtctgtccagcaaccaggataggcacctccttc
ttgatcctggagacaggctcagggggtagagctggactccagggcactctggcttcatcc
cctgctgggctcagccctgagatccccccggaggactgcagcaaccctgagttgctgctt
gcctggccccacagctctgtggagccgctcctctcctcctcacagggctctgaggaggga
cctaaaaggcgagtggacagccagccatggagggaaggtgttaatccatacatccggaga
cccagagaaaccaagatggacccgagagggcagacgctcctccgccgcatggtggcagaa
gggcagggccgagatgtctgggagactatgaagtctggtttagggtctttcaatgtgggg
ctggttaggattaggaccctagaggaggcagcgcagatcagacctggtgcctcccacgat
cagactggcggccggcggcctggcaactgtgatggctgctccctccgccaatgtcacctg
ctgttcatgcagcacgtggccgcaccttctgacactaaactcaggaaggcaccaagactg
gcggcatggctttacacccaaaccatcttggtgcttcatgacagccagatccctcacctc
actgcccgagatggcagccacatgagacaggccctggaaataacaggcctgatcatcatc
gccaaggagaaacctcatgtttttaagaagtccctgtggtggcagtggtccatgaaggcc
agcaccacaaataaagctacaactgctcagtgtttatgtaacacccagataaaaccaccc
ccacccttctccatgtcatctcaatgtagtgacatagccaaaagtaacgcaggactgctg
gatttccggcaaaaactcccagtctctcgttccaccttacgagaaacacccaaaggacag
tgctgtggaggggtcgctaagagtccgaatcagcaggtgggcactggtaataataccagt
aataagaaccaacacaggacagcagggcccaaagccccctgcgctaagggccctgtccca
tctctgccctacacgcgggagtcagcctaa

>gi568815588r:43286640_43487884|GENSCAN_predicted_peptide_2|177_aa
MEPWAWLQGLKSRPTCPAASSDPFSALPAQDTGEGAVRNLQSHTVGLTALEANDPFDWKN
LQLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQHSPVPEKAIPLITPGRFLTLAKSNKPL
SPSTFVLVFGISYTSVFRVPLSASLYPAIPGDAAALTSGHPSMQNISMQNTGTKGCT

>gi568815588r:43286640_43487884|GENSCAN_predicted_CDS_2|534_bp
atggagccctgggcgtggctgcagggtttaaagagccgacccacgtgcccagcagcctcc
tcagatccgttctctgcgctgccagctcaggacactggtgaaggagcagtgaggaacctg
cagagtcacacagttggcctgactgccttggaagccaatgacccatttgactggaaaaac
ctgcagctgagcggactgatctgcggagggctcctggccattgctgggatcgcggcagtt
ctgagtggcaaatgcaaatgcaagagcagccagaagcagcacagtcctgtacctgagaag
gccatcccactcatcactccaggcagatttctcaccttggccaaatcaaataaaccttta
tctccaagcacctttgtcttggtgtttggcatcagctacacatcagtcttccgagtgcct
ctttctgcgtccctgtaccctgccattcctggtgatgctgctgccctcacatcaggccat
ccaagcatgcagaacataagcatgcagaacactggaacgaagggctgtacctaa

>gi568815588r:43286640_43487884|GENSCAN_predicted_peptide_3|414_aa
MLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVEL
GSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFG
CTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYI
EVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYG
GYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKAT
ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL
NSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD

>gi568815588r:43286640_43487884|GENSCAN_predicted_CDS_3|1245_bp
atgctgggccctgagggaggtgaaggctttgtggtcaagctccgtggcctgccctggtcc
tgctctgttgaggacgtgcagaacttcctctctgactgcacgattcatgatggggccgca
ggtgtccatttcatctacactagagagggcaggcagagtggtgaggcttttgttgaactt
ggatcagaagatgatgtaaaaatggccctgaaaaaagacagggaaagcatgggacaccgg
tacattgaggtgttcaagtcccacagaaccgagatggattgggtgttgaagcacagtggt
cccaacagtgccgacagcgccaacgatggcttcgtgcggcttcgaggactcccatttgga
tgcacaaaggaagaaattgttcagttcttctcagggttggaaattgtgccaaacgggatc
acattgcctgtggaccccgaaggcaagattacaggggaagcgttcgtgcagtttgcctcg
caggagttagctgagaaggctctagggaaacacaaggagaggatagggcacaggtacatt
gaggtgtttaagagcagccaggaggaagttaggtcatactcagatccccctctgaagttc
atgtccgtgcagcggccagggccctatgaccggcccgggactgccaggaggtacattggc
atcgtgaagcaggcaggcctggaaaggatgaggcctggtgcctacagcacaggctacggg
ggctacgaggagtacagtggcctcagtgatggctacggcttcaccaccgacctgttcggg
agagacctcagctactgtctctccggaatgtatgaccacagatacggcgacagtgagttc
acagtgcagagcaccacaggccactgtgtccacatgaggggcctgccgtacaaagcgacc
gagaacgacatttacaacttcttctctcctctcaaccctgtgagagtccatattgagatt
ggcccagatggaagagtgacgggtgaagcagatgttgagtttgctactcatgaagaagct
gtggcagctatgtccaaagacagggccaatatgcagcacagatatatagaactcttcttg
aattcaacaacaggggccagcaatggggcgtatagcagccaggtgatgcaaggcatgggg
gtgtctgctgcccaggccacttacagtggcctggagagccagtcagtgagtggctgttac
ggggccggctacagtgggcagaacagcatgggtggctatgactag

>gi568815588r:43286640_43487884|GENSCAN_predicted_peptide_4|237_aa
MKAVRMSKARNVLACPPPPPPPPAVSALLRAQPANRRLSSGASQCAVAAPPPDAGRRNSA
LPRSLRPSGSVVEAGLRRVFLKYFRRFRPARRKLVDGARLLLRRLPGSPNRRVVDQGFEE
QGTRLALPPRPPRAREPLPLGAWDPRSAPRVSRRRVEGEPSSAIARGRPGDELTRLFSSR
NCSRALGARAGHLRGGTRGARWRLRAKGNGRRRRLPGTARGGPCAGVRATASGGREF

>gi568815588r:43286640_43487884|GENSCAN_predicted_CDS_4|714_bp
atgaaggcagttagaatgtctaaagcaagaaacgtcctcgcttgtccgcctccaccgcct
cccccgccagccgtgtcggctctgctccgcgcccagccggccaaccggcggctcagctct
ggcgcgtcacaatgcgccgtcgcggccccgcccccggacgccggacgcagaaactccgcc
ctgccgcggtccttgcgtccttccggctccgtcgtggaagcaggactgcgccgcgtcttc
ctcaagtattttcgtcgattccgccctgctcgtaggaaacttgtggacggggcccggctc
ctgctgcgccggctgcccggctcccccaaccgcagagtcgtggaccagggttttgaggag
caaggcacccgactcgccctccccccaaggccgccccgggcgcgggaacccctcccccta
ggcgcctgggacccccgctcggctccgcgtgtgtcccggcggagggtggaaggagagccg
agctcggccattgcccgcgggcggcccggggacgagctgacgcgcctctttagttctcga
aactgctcgcgggcgctgggggctcgggccggccatctgcgtggcgggacgcgaggcgcg
cgctggcggctgcgcgcgaagggcaacgggcggcggcggcggcttcccggaaccgcgcgg
ggcgggccctgcgccggggtcagggccacagcctcaggcggcagggagttctga

>gi568815588r:43286640_43487884|GENSCAN_predicted_peptide_5|568_aa
MASRPRPRTPSRGPSDLRFRGEAGLRRVFLKKAGVRVRPADKRAAGSRVGCPWHRAEPPL
GTREQQGFRKRRERWTGGRPGFAQAPPLGGPAQGALRQFPWMEHVSECGIWLAAPGTGRS
KLRVQNGQPDPTLARTLGWRCQGEGAHYPKTLEGVLRCSGSVSFSDVAVGFTQEEWQHLD
SAQRTPYRDMMLENYSLLLSVGYCITKPEVVCKLEHGQVLWILEEESPSQSHLDCCIDDD
LMEKRQENQDQHLQKVDFVNNKTLTMDRNGVLGKTFSLDTNPILSRKIRGNCDSSGMNLN
NISELIISNRSSFVRNPAECNVRGKFLLCMKRENPYARGKPLEYDGNGKAVSQNEDLFRH
QYIQTLKQCFEYNHRGYTEERNPMNALNVGKLLDIGHALQYIKEHTRDKTYECNECGKNF
CEKSNLHVHQRTHTGEKPYGCNECQKAFGDRSALKVHQRIHTGEKPYELHQRTHTGEKPY
ACSECGKTFYQKSSLTTHQRTHTREQPYEYNESFYQNPNFTKCQRDNIEETLVNILKAQK
PSPSWTRSIAETTQVGVRTPNKDEKSFA

>gi568815588r:43286640_43487884|GENSCAN_predicted_CDS_5|1707_bp
atggcgtcgcggccccgcccccggacgcccagccgcggtcccagcgaccttcgctttcgt
ggggaagccggactgcgccgtgtcttcctgaagaaggctggggtaagagtccggccagcg
gacaagagggcagctggtagcagggtgggatgcccgtggcatagggccgagcccccgcta
ggcacgcgggagcagcaaggcttccggaagcgcagggagcgctggactggcgggcgcccg
ggattcgcgcaggccccgcccctcggcggccccgcccagggagcgctgcggcagtttcca
tggatggagcacgtgagtgagtgcgggatctggctggctgctccgggcactggcaggagc
aagctccgtgtccagaatggccagccagatcccacacttgctcgcacacttggatggcgg
tgccaaggcgagggtgcccactaccccaaaaccctagagggagtgttacggtgctctgga
tcagtgtccttcagtgatgtggctgtgggcttcacccaggaggagtggcagcatctggac
tctgctcagaggaccccgtacagagacatgatgctggagaactacagcctcctcctctca
gtgggatattgcattaccaaaccagaggtggtttgcaagttggagcatggacaggtgctg
tggatattagaggaagagtccccaagtcagagccacctagactgctgcatagatgatgac
ctgatggagaagagacaggaaaatcaagaccagcatttgcagaaagttgattttgtcaac
aataaaacactgactatggacagaaatggtgtattaggaaaaacattttctcttgacaca
aaccccattctatcaagaaaaatacgtggcaactgtgactcatctggaatgaatttgaat
aatatttcagaattaattattagtaatagaagctcctttgtaaggaaccctgctgagtgt
aatgtacgtgggaaatttctcctctgtatgaagcgtgagaatccttatgccagagggaaa
cctttggaatatgatggaaatgggaaagccgtctctcagaatgaggacttatttaggcat
cagtatattcaaactcttaagcagtgttttgaatacaatcacagaggatacacagaggag
agaaaccctatgaatgcactgaatgtgggaaaacttttggatataggtcatgccttgcag
tacatcaaagaacacacacgggacaaaacctatgaatgtaatgaatgtggaaaaaacttc
tgtgagaagtcaaatcttcatgtacatcagagaacacacacaggagagaaaccctatgga
tgtaatgaatgtcagaaagcctttggtgataggtcagctctaaaagtacatcagagaata
catactggcgagaaaccctatgagttacatcagagaacccacacaggagagaaaccctat
gcatgtagtgaatgtgggaaaaccttctaccagaagtcatccctcacaacacatcagaga
acacacacaagggagcaaccctatgaatataatgaaagcttttaccagaatcccaacttc
actaaatgtcagagagacaacatagaggaaacccttgtcaacatcctgaaggctcagaaa
ccttcaccttcttggactcgttccatagcagaaacaacccaggttggggtgagaacaccc
aataaagatgagaaatcttttgcctag