GENSCAN 1.0	Date run:  3-Nov-116	Time: 14:14:32

Sequence gi568815596r:39150621_39536987 : 386367 bp : 38.97% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.13 PlyA -    171    166    6                               1.05
 1.12 Term -    528    381  148  2  1   76   44   112 0.046   1.99
 1.11 Intr -  27949  27912   38  1  2  101   58    29 0.121  -2.66
 1.10 Intr -  28139  27975  165  2  0  105   62    24 0.214   0.74
 1.09 Intr -  28701  28567  135  0  0   97   80   118 0.959  11.74
 1.08 Intr -  34027  33971   57  1  0  103   75    70 0.823   5.36
 1.07 Intr -  37089  37007   83  1  2   93  103   -10 0.776  -0.56
 1.06 Intr -  39882  39685  198  1  0   81   52   184 0.766  12.50
 1.05 Intr -  41328  41160  169  0  1   55   51    49 0.240  -3.50
 1.04 Intr -  45836  45662  175  1  1  116   54    60 0.228   4.42
 1.03 Intr -  46440  46332  109  1  1  102  105     3 0.324   1.82
 1.02 Intr -  54024  53907  118  0  1   44   80    23 0.147  -3.78
 1.01 Init -  55380  55318   63  0  0   64   93    87 0.304   8.00
 1.00 Prom -  56287  56248   40                              -5.75

 2.04 PlyA -  57114  57109    6                               1.05
 2.03 Term -  68418  67953  466  2  1    5   37   237 0.493   3.80
 2.02 Intr -  75340  75219  122  1  2   89  106    24 0.890   2.67
 2.01 Init -  78912  78745  168  0  0   59  115    75 0.964   6.88
 2.00 Prom -  86672  86633   40                              -6.55

 3.00 Prom +  87197  87236   40                              -5.75
 3.01 Init +  89050  89120   71  0  2   40   81    46 0.439  -0.33
 3.02 Term +  93099  93561  463  0  1  124   55   533 0.705  47.14
 3.03 PlyA +  94458  94463    6                               1.05

 4.28 PlyA -  95411  95406    6                               1.05
 4.27 Term - 106448 106198  251  0  2   73   45   163 0.989   5.38
 4.26 Intr - 107820 107728   93  1  0  105   97    36 0.972   5.22
 4.25 Intr - 110157 109986  172  0  1  105   72    90 0.886   7.69
 4.24 Intr - 114686 114583  104  0  2   51  121    42 0.618   2.77
 4.23 Intr - 121780 121663  118  1  1  102  116   -34 0.187  -0.08
 4.22 Intr - 127866 127787   80  1  2   51   91    95 0.365   4.45
 4.21 Intr - 137636 137501  136  2  1   75   63    56 0.396   1.02
 4.20 Intr - 139714 139672   43  0  1   93   69    36 0.667  -0.48
 4.19 Intr - 142206 142153   54  2  0   66   98   102 0.280   6.18
 4.18 Intr - 149181 149123   59  0  2   50  108    41 0.023  -0.94
 4.17 Intr - 158899 158841   59  2  2   80   89    39 0.069   0.88
 4.16 Intr - 164768 164690   79  2  1   95   95    46 0.197   4.21
 4.15 Intr - 175008 174898  111  0  0   28   75   128 0.486   5.16
 4.14 Intr - 186961 186906   56  2  2   93   99    17 0.007   1.08
 4.13 Intr - 192832 192768   65  0  2  106  107    -1 0.004   1.04
 4.12 Intr - 204165 204087   79  1  1   75   75    74 0.010   2.49
 4.11 Intr - 209231 208868  364  2  1   55   31   168 0.005   1.63
 4.10 Intr - 209963 209791  173  0  2   24   11   160 0.018   0.64
 4.09 Intr - 227503 227446   58  1  1  123   99    46 0.085   6.74
 4.08 Intr - 253707 253608  100  2  1   66   62    76 0.265   1.99
 4.07 Intr - 253874 253767  108  1  0  104   89    92 0.341   9.38
 4.06 Intr - 262790 262702   89  2  2   54   67    32 0.012  -4.45
 4.05 Intr - 280889 280794   96  2  0   74   86   105 0.044   8.19
 4.04 Intr - 286328 286117  212  0  2   58   -6   283 0.111  13.61
 4.03 Intr - 286533 286485   49  0  1   97   27   133 0.096   5.43
 4.02 Intr - 318111 318007  105  0  0   56   14   122 0.052   1.09
 4.01 Init - 325954 325871   84  1  0   76  100    90 0.985   9.87
 4.00 Prom - 330910 330871   40                              -5.35

 5.11 PlyA - 331549 331544    6                               1.05
 5.10 Term - 336009 335918   92  1  2  124   44    55 0.297   1.60
 5.09 Intr - 356645 356522  124  2  1   75   92    44 0.526   2.74
 5.08 Intr - 361084 360743  342  1  0  -37   70   238 0.358   4.20
 5.07 Intr - 361938 361830  109  2  1   67   48   123 0.466   5.57
 5.06 Intr - 364559 364441  119  2  2   53   68    59 0.521  -1.26
 5.05 Intr - 364879 364761  119  2  2   46  100    23 0.351  -1.44
 5.04 Intr - 365789 365685  105  0  0   83   97    32 0.595   2.87
 5.03 Intr - 366351 366230  122  2  2  -24   41   215 0.659   4.82
 5.02 Intr - 367032 366877  156  2  0   50  107   109 0.927   7.20
 5.01 Init - 375181 375024  158  1  2   80   87   104 0.859   8.93
 5.00 Prom - 378160 378121   40                              -3.75


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 234883 234843   41  1  2   78  115    36 0.943   5.01
S.002 Term - 318111 317995  117  0  0   56   42   135 0.823   3.26


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:39150621_39536987|GENSCAN_predicted_peptide_1|485_aa
MDSDSIVGRLRSVADRSRLAPKNNQIMILQCIHRDIKPENILITKQGIIKICDFGFAQIL
SWTSSFSGASLIGLIVDLLNSFSANSEIFLLAWIHCWDGASSEPNCIDCYFSSGSSHPEK
LPGSGLVLGSVCKESRDVIHCQIFQLWIPAPALVECLWGYLTTLLRRIAHYLISASRAAF
QLFLLCNAFVQLLIVQGPVMILGLASTHLEAVPGDAYTDYVATRWYRAPELLVGDTQYGS
SVDIWAIGCVFAELLTGQPLWPGKSDVDQLYLIIRTLGKLIPRHQSIFKSNGFFHGISIP
EPEDMETLEEKFSDVHPVALNFMKGCLKMNPDDRLTCSQLLESSYFDSFQEAQIKRKARN
EGRNRRRQQQAPKSAFPRLFLKTKICQVQRNETQTSGNQILPNGPILQNSMVTVMTNINS
AVYQKTLKLNRKLHGNRSEAVFGCCSSAPGCIENRFRVSSHSGTQAKGAAHMGNMPFSWQ
RAQET

>gi568815596r:39150621_39536987|GENSCAN_predicted_CDS_1|1458_bp
atggattctgacagcatcgtgggccgtctcaggagtgttgctgatcgttccaggttagct
ccgaaaaataatcaaataatgatcttacagtgtattcacagagatataaaacctgaaaat
attctaataactaagcaaggaataatcaagatttgtgacttcgggtttgcacaaattctg
agttggacttcatctttctctggtgcctccttgattggcttaatagttgaccttctgaat
tctttttctgccaattcagagatttttctcctggcttggatccattgctgggatggggct
tcctcagagccaaactgcattgattgttatttctcttctggatctagccacccagagaag
ctaccaggctctgggctggtactaggaagtgtctgcaaagagtcccgtgatgtgatccat
tgtcagatctttcagctatggataccagcacctgctctggtagagtgtctttggggctac
ctgacgactttactaaggagaattgcccattacctcatctctgcaagtcgggctgctttc
caattgttcctcctctgtaatgcatttgtacagctcctgatcgttcagggtcctgtgatg
attctgggattggcttccacccacttggaggcagttccaggagatgcctacaccgattat
gtagctacgagatggtaccgagctcctgaacttcttgtgggagatactcagtatggttct
tcagtcgatatatgggctattggttgtgtttttgcagagctcctgacaggccagccactg
tggcctggaaaatcagatgtggaccaactttatctgataatcagaacactaggaaaatta
atcccaagacatcaatcaatctttaaaagtaacgggtttttccatggcatcagtatacct
gagccagaagacatggaaactcttgaggaaaagttctcagatgttcatcctgtggctctg
aacttcatgaaggggtgtctgaagatgaatccagatgacagattaacctgttcccaactc
ctggagagctcctactttgattcttttcaagaggcccaaattaaaagaaaagcacgtaat
gaaggaagaaacagaagacgccaacagcaggcacctaagtctgcctttcctaggcttttt
ctcaaaaccaagatctgccaggtacaaaggaatgaaacccagacatctgggaaccaaatt
ctacccaatgggccaatattgcagaacagtatggtgactgttatgacaaacattaattct
gcagtttatcagaaaactttgaagttaaatcgtaaactccatggaaataggtcagaggct
gtgtttggctgctgcagctctgctccaggctgcattgagaatcgatttcgagtgtcttct
cattcagggacccaggccaaaggagcagctcatatgggaaatatgcccttctcatggcag
agggcacaggaaacttga

>gi568815596r:39150621_39536987|GENSCAN_predicted_peptide_2|251_aa
MEKYEKLAKTGEGSYGVVFKCRNKTSGQVVAVKKFVESEDDPVVKKIALREIRMLKQLKH
PNLVNLIEVFRRKRKMHLVFEYCDHTLLNELERNPNGPTIKKSYESLKKNKAQCGVRECP
GGVLVKVLQRNKTSGIHRGTDNRKFIIGIDSCDYGGREVPQSAICKLENQESRWSNSGQV
LRPQRTESFKVQRPESQELPHPRAGEDGRPSSRREKQPFPYRFVVSRPSTGLMMPACLPS
PLWVGLLYAVY

>gi568815596r:39150621_39536987|GENSCAN_predicted_CDS_2|756_bp
atggaaaagtatgaaaaattagctaagactggagaagggtcttatggggttgtattcaaa
tgcagaaacaaaacctctggacaagtagtagctgttaaaaaatttgtggaatctgaagat
gatcctgttgttaagaaaatagcactaagagaaatacgtatgttgaagcaattaaaacat
ccaaatcttgtgaacctcatcgaggtgttcaggagaaaaaggaaaatgcatttagttttt
gaatactgtgatcatacacttttaaatgagctggaaagaaacccaaatggtccaacaata
aagaagagttatgagtctttgaagaaaaataaagcacagtgtggagttagagaatgccca
ggaggtgtattagtcaaggttcttcagagaaacaaaaccagtgggatacatagaggtact
gataacaggaaatttattattggtattgactcatgtgattatggagggagagaagttcca
caatctgccatctgcaagctagagaaccaggaaagccgatggtctaattcaggccaagtc
ctaaggccccagaggacagagagtttcaaagtccaaaggcctgagagccaggagcttcca
catccaagggcaggagaagatggacgtcccagctcaaggagagagaagcagcccttcccc
taccgttttgttgtatccaggccttcaacgggtttgatgatgcctgcctgcctgccctca
cctttgtgggtgggtcttctttacgcggtctactga

>gi568815596r:39150621_39536987|GENSCAN_predicted_peptide_3|177_aa
MTKIQRLTISSVDKMETGTHTNHWGHRSGRRSRFSFGELFLVPATGIRSLDLAAHPINPA
RCPQFPRHRQNPHLLHPQGDGDEASSSAEQPQPQLPRVSLGGGAVYPATSEPAEPPQRLP
GNRNARARGALRLPERVPLALAAPALILLRGDSVLAVLTALARSRRLLCLGSHFGGT

>gi568815596r:39150621_39536987|GENSCAN_predicted_CDS_3|534_bp
atgactaaaatccaaagactgacaatatcaagtgttgataagatggaaactggaactcac
acaaatcactggggccaccgaagcggaaggcggtcccgcttttctttcggggaacttttc
ttggttcctgcaactgggatccgcagtctagacctcgcggctcaccccatcaaccccgca
cgctgcccgcagttcccccgccaccggcagaatccgcacttactgcacccacagggcgac
ggtgacgaagcttcgagcagcgccgaacagccccagccccagctcccgcgcgtgtcgctc
ggaggaggcgccgtgtacccagcgacttcggagccagcggaaccgccgcagcgtctcccg
ggcaaccggaacgctagggcgcgcggggcactgcggcttccggagcgggttcccctggcg
ctggcagccccagccctgatccttctgagaggtgacagcgtgctggcagtcctcacagcc
ctcgctcggtctcgacgcctcctatgcctgggctcccactttggcggcacttga

>gi568815596r:39150621_39536987|GENSCAN_predicted_peptide_4|998_aa
MGAEGKTVSFSDSETTAVTSERAIAKRKESGPDPDPKRGFLDLAQERIQGKSTVQSKSKF
IKKRREGSGGGGGGRSVEPGGLRADSAHRQRHLRRRLQGKGRGRAPPRPWDPDPQPSLGV
RALAACPRETLAPGSSRGGGAADAKGSAALGYSSGMDPGFTGPEVDAVLGTLIKKTKLEL
KKTSALIAPFPHNGGETLRGMVVLFLAPSLIRQRSLTHWPPPLQAHGEYCQATADVHLRP
EGSSVSLCAGPEMLSKSQGLESGTPRVHLVLYPTVAELVPKARNVNTGELAAIKVIKLEP
AREWTSTVNWYQEWGAAVKIPENLEATLELGNRQRLEQFGGLRRRKENVEKFGSSERLPR
DLVLCILAAPAVAKRGQRIAQAIASEGASPKPGSFHVVLSSQVHRNQELRFENLWLDFQG
YMEIPGCPDRSLLQGWSPRGSARAVQKGNMGLEPPHRVPTAALPSGTVRRWSLSSGSQNA
FEKPTGPAVHGCNHSCTALIAPPWLRRDKLWICMEFCGGGSLQDIYHVTGPLSELQIAYV
SRETLQHPFVTQHLTRSLAIELLDKVNNPDHSTYHDFDDDDPEPLVAVPHRIHSTSRNVR
EEKTRSEITFGQVKFDPPLRKETEPHHELDLQLEYGQGHQGGYFLGANKGHVAHLEDDEG
DDDESKHSTLKAKIPPPLPPKEMHSTEDENQGTIKRCPMSGSPAKPSQVPPRPPPPRLPP
HKPVALDQYLIFGAEEGIYTLNLNELHETSMEQVKLLSFIPIIYQGFLIMQDKCKSYLLL
FQHTNSLTEYCQVRNPYTGHKYLCGALQTSIVLLEWVEPMQKFMLIKHIDFPIPCPLRMF
EMLVVPEQEYPLVCVGVSRGRDFNQVVRFETVNPNSTSSWFTESGCIKIVNLQGRLKSSR
KLSSELTFDFQIESIECHSSNKQMIIISQFRGISDQDVKMESAFKDIARVKKQDQQQNLK
AVYRSEANRPAGLQLQKYPTGDGEPQPSSLLVVPDNQA

>gi568815596r:39150621_39536987|GENSCAN_predicted_CDS_4|2997_bp
atgggggctgaaggaaaaacggtttcattcagtgactcggaaacaacagcagtgacttca
gagagggcaattgccaagagaaaggaaagcggtcctgatccagaccccaagagagggttc
ttggatcttgcgcaagagagaattcagggcaagtccacagtgcagagcaaaagcaaattt
attaagaaacggcgtgaggggagcggcggcggcggcggcggccgcagcgtggagccggga
ggacttcgagctgattcagcgcatcggcagcggcacctacggcgacgtctacaaggtaaa
ggcaggggccgcgcgccgccgaggccgtgggatcccgacccgcagccaagcctgggcgtc
cgagcccttgccgcctgtcctcgggagacgctggcgccagggagcagtcggggaggagga
gctgcggacgccaagggctctgctgccttgggatacagttcagggatggatccaggtttt
acgggacctgaagttgatgcagttttggggaccctcattaagaaaacaaaactagaatta
aaaaagacttctgccttaattgccccctttcctcataatggtggagagacattaagggga
atggtggttctgttcctagctccctcgttaattaggcagaggagcctcacgcattggcca
ccaccactacaggcccatggggagtactgtcaggctaccgctgatgttcacttaagacct
gagggttcttcagtcagcttgtgtgcaggtccagaaatgctgtccaagagccaaggccta
gaatcagggactccaagagtccacttggtgctctaccccactgtggctgagctggtacct
aaggcacggaatgttaacactggtgaattagcagcaattaaagtaataaaattggaacca
gcacgagaatggactagtacagtaaattggtaccaggagtggggtgctgctgtaaagata
cctgaaaatctggaagcaactttggaattgggtaacaggcagaggttggaacagtttgga
gggctcagaagaagaaaagaaaatgtggaaaagtttggaagttccgagagacttcctagg
gacttggtgctctgcatcctagccgctccagccgtggctaaaaggggccaacgtatagct
caggccattgcctcagagggtgcaagccccaagcctggcagcttccacgtggtattgagc
tcacaggtgcacagaaaccaagaactgaggtttgagaacctctggctagatttccaagga
tatatggaaatacctggatgtccagacagaagtttgctgcaagggtggagccctcgtggt
tctgctagggcagtgcagaagggaaacatggggttggagcccccacacagagttcccact
gcagcactgcctagtggaactgtgagaaggtggtcactgtcctctggatctcagaatgct
tttgaaaaaccaactggacctgctgttcatggttgtaaccactcttgtacagctttgatt
gccccaccttggttaaggcgagataagctttggatttgcatggagttttgtggaggtggt
tctttacaggatatttatcacgtaactggacctctgtcagaactgcaaattgcatatgtt
agcagagaaacactgcagcatccttttgtaacacaacatttgacacggtctttggcaatc
gagctgttggataaagtaaataatccagatcattccacttaccatgatttcgatgatgat
gatcctgagcctcttgttgctgtaccacatagaattcactcaacaagtagaaacgtgaga
gaagaaaaaacacgctcagagataacctttggccaagtgaaatttgatccacccttaaga
aaggagacagaaccacatcatgaacttgatctgcaactggaatatggacaaggacaccaa
ggtggttactttttaggtgcaaacaaaggacacgtcgcacatttagaagatgatgaagga
gatgatgatgaatctaaacactcaactctgaaagcaaaaattccacctcctttgccacca
aaggaaatgcattctactgaggatgaaaatcaaggaacaatcaagagatgtcccatgtca
gggagcccagcaaagccatcccaagttccacctagaccaccacctcccagattaccccca
cacaaacctgttgccttagatcagtacttgatatttggtgccgaagaagggatttatacc
ctcaatcttaatgaacttcatgaaacatcaatggaacaggtaaagcttctcagctttatt
cccataatttaccagggctttttgattatgcaagacaaatgcaaaagttacctgttgcta
ttccagcacacaaactccctgacagaatactgccaagtaagaaatccttacacgggccat
aaatacctatgtggagcacttcagactagcattgttctattagaatgggttgaaccaatg
cagaaatttatgttaattaagcacatagattttcctataccatgtccacttagaatgttt
gaaatgctggtagttcctgaacaggagtaccctttagtttgtgttggtgtcagtagaggt
agagacttcaaccaagtggttcgatttgagacggtcaatccaaattctacctcttcatgg
tttacagaatcaggttgtataaaaatagtaaatctccaaggaagattaaaatctagcagg
aaattgtcatcagaactcacctttgatttccagattgaatcaatagaatgtcattcatcc
aacaaacaaatgattataataagtcagtttcgagggatatctgatcaagatgttaaaatg
gaatccgctttcaaagacatagccagggtcaaaaagcaagatcaacaacagaatctcaaa
gcagtatacaggtctgaagctaacaggcctgctgggctccagttacaaaagtatcccaca
ggagatggagaaccacagccaagttcattgcttgtggtacctgataatcaggcatga

>gi568815596r:39150621_39536987|GENSCAN_predicted_peptide_5|481_aa
MRQVELPGQKVVTNGENCVDIMQILMESEAVGVKDSVVLPRFRVPSEVFVRSWYSLNSKF
LSNYLVGFGGEQLAGYLFEAGVPEATLLCIDISWHTAFSKKADGRLESSSSSAADEANQL
VGADSQRPKDFPGATPLWKFEDVGTENRKGKNRLGRAKMMFYQGELFLTSSPFRDVTSFE
GVNQIDLFKLHQHISHSQKWSAVTFTTIVPNHFRKFWGKENLIARDCQGARNLHFYQAHR
LLLVQVVCGSDFGTLCYKEFSAAFQITRGIIECNCLWRVGGRIGHKFIGRLKEKRKIPVL
DAFQEKAKSEQPEQLWEIQVCALLGRMRTGGSAGPELQTKSMVCSLGGDQRTQATGSGAQ
RASMSLQGSACGQEDRSELPASAYGKLDMYLPVSPREGVLCQLELSQERQWSHLLIENPG
THWLLPNPRLYFHCNFRANLPPYGVCCIPEVVHIKRETRQPERSSKMLGGEGLSPTKYST
I

>gi568815596r:39150621_39536987|GENSCAN_predicted_CDS_5|1446_bp
atgaggcaggtagaattgcctggtcaaaaggtggtcacaaatggtgagaactgtgttgac
attatgcaaatactgatggagagtgaagcagttggggtcaaagactccgtggtgctcccc
aggtttagggttccgagtgaagtatttgtgagaagttggtattcactcaactccaagttc
ctttccaattacctggtggggtttggtggggagcagttagctggatacctgtttgaagca
ggtgtcccagaagccaccttgctgtgcatagacatcagctggcatacagccttcagtaag
aaggctgatggaaggctggagtccagcagcagttcagctgcagatgaagcaaatcagctg
gttggtgctgacagccagagacccaaggactttcctggtgctacacctctctggaagttt
gaagatgttgggacagaaaacagaaaaggaaagaatagattgggaagggcaaaaatgatg
ttttatcaaggagagctctttctcaccagctccccattcagagatgtaaccagctttgaa
ggcgtcaatcaaattgaccttttcaaattgcaccaacacatctcgcattcacagaaatgg
tctgctgtgaccttcacaacaattgttcctaaccactttaggaagttctgggggaaggaa
aatctgatagcacgggactgtcagggagccaggaatctgcatttttatcaagcccaccgg
ctgctactagtacaggtggtctgtggctcagactttggaacactgtgctataaggaattc
tcggccgccttccaaatcaccagaggcatcatagaatgcaactgtctgtggagggttgga
ggacgaattggacacaaattcattggacggctgaaggaaaaaagaaagattcccgtcctg
gatgctttccaagaaaaagcaaaaagtgagcaaccagagcagttatgggaaattcaagtg
tgtgctttgttgggaaggatgagaacggggggttccgctggcccagagctgcaaacgaaa
tcaatggtctgcagcttgggaggtgaccagaggacccaggccactggatcaggcgctcag
agagccagcatgagccttcaaggcagtgcttgtgggcaggaggacaggtctgagcttcct
gccagtgcctatggcaagttggatatgtatttgccagtatccccaagggaaggggttctg
tgccagctggagctctctcaggaaagacagtggagccacctgctcatagagaaccctggc
acccattggcttcttcctaatcctagattgtacttccattgcaacttcagagccaattta
ccaccctatggggtttgctgtattccagaagtggtacacattaaaagggaaacacgtcag
ccagagagaagcagcaaaatgcttgggggtgaggggttgtcccccaccaagtacagcacc
atctag