hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080304/iprscan-20080304-21042692/chunk_1/iprscan-20080304-21042692.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB4014 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 77.4 1.8e-18 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/3 358 382 .. 1 23 [] 22.2 0.074 SM00355 2/3 388 412 .. 1 23 [] 28.9 0.00068 SM00355 3/3 418 440 .. 1 23 [] 26.3 0.0043 Alignments of top-scoring domains: SM00355: domain 1 of 3, from 358 to 382: score 22.2, E = 0.074 *->ykCpi.gCgksfssk.aLkrHmrvH<-* + C+++gCgk++ ++Lk H r+H pF1KB4014 358 HICSHpGCGKTYFKSsHLKAHTRTH 382 SM00355: domain 2 of 3, from 388 to 412: score 28.9, E = 0.00068 *->ykCpi.gCgksfssk.aLkrHmrvH<-* + C+++gC ++f + ++L rH r+H pF1KB4014 388 FSCSWkGCERRFARSdELSRHRRTH 412 SM00355: domain 3 of 3, from 418 to 440: score 26.3, E = 0.0043 *->ykCpigCgksfssk.aLkrHmrvH<-* + Cp+ C+++f + ++L++H r+H pF1KB4014 418 FACPM-CDRRFMRSdHLTKHARRH 440 //