Result of FASTA (omim) for
pF1KB3946
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3946, 509 aa
1>>>pF1KB3946 509 - 509 aa - 509 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.6584+/-0.000451; mu= -22.4982+/- 0.028
mean_var=667.1116+/-138.572, 0's: 0 Z-trim(125.1): 59 B-trim: 0 in 0/62
Lambda= 0.049656
statistics sampled from 48082 (48152) to 48082 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.565), width: 16
Scan time: 8.980
The best scores are: opt bits E(85289)
NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 3554 269.3 1.9e-71
NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 1350 111.4 6e-24
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 1178 99.0 3e-20
NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 534 52.9 2.2e-06
NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 461 47.6 7.8e-05
NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 430 45.4 0.00036
NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 423 44.8 0.0004
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 408 43.6 0.00074
NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 405 43.4 0.00088
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 407 43.7 0.00098
NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 397 43.1 0.0021
NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 385 42.1 0.0029
NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 387 42.4 0.0035
NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 381 41.9 0.0041
NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 379 41.8 0.005
>>NP_000337 (OMIM: 114290,608160,616425) transcription f (509 aa)
initn: 3554 init1: 3554 opt: 3554 Z-score: 1403.8 bits: 269.3 E(85289): 1.9e-71
Smith-Waterman score: 3554; 100.0% identity (100.0% similar) in 509 aa overlap (1-509:1-509)
10 20 30 40 50 60
pF1KB3 MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 PKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQAPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 QPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 SPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPAQRPMYTPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPAQRPMYTPI
430 440 450 460 470 480
490 500
pF1KB3 ADTSGVPSIPQTHSPQHWEQPVYTQLTRP
:::::::::::::::::::::::::::::
NP_000 ADTSGVPSIPQTHSPQHWEQPVYTQLTRP
490 500
>>NP_008872 (OMIM: 602229,609136,611584,613266) transcri (466 aa)
initn: 1439 init1: 805 opt: 1350 Z-score: 551.0 bits: 111.4 E(85289): 6e-24
Smith-Waterman score: 1682; 54.4% identity (72.1% similar) in 502 aa overlap (13-509:18-466)
10 20 30 40 50
pF1KB3 MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPK
:. . :: . .:... :..:. ::: . . . :
NP_008 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGG----GSGLRASPGPGELGKVKK
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 GEPDLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVW
. : :...:::::::::::::::.:::::::::::::::.::.::::::::::::::
NP_008 EQQD--GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 AQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ
::::::::::::::::::::::::::::::::::.::::.:::::::.::::::::::::
NP_008 AQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 PRRRKSVKNGQAEAE----EATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEH-SGQ
:::::. : .:.::: :: . . .: .:. . : : . : . :: :::
NP_008 PRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 SQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFD
:.:::::::::::..: :::: ::.:: . :::. : ::: .:::::.: .:.::.::::
NP_008 SHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGK-PHIDFGNVDIGEISHEVMSNMETFD
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 VNEFDQYLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPP
: :.::::::::::: : . ...::..:. :. ::. .:.:: :: :
NP_008 VAELDQYLPPNGHPG----HVSSYSAAGYGLGSALAV-ASGHSAWISK----PPGVALPT
300 310 320 330 340
360 370 380 390 400 410
pF1KB3 QAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQ
.::. .: : .. .: :: .: ::..:
NP_008 VSPPGVDAKAQVKTE-----TAGPQ---------------------------GPPHYTDQ
350 360 370
420 430 440 450 460 470
pF1KB3 QQHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMN
: .::::. ..::::. ..: :.: :.::.::: :. ::.:. ::..::::.:.::.
NP_008 P--STSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHS-GQASGLYSAFSYMG
380 390 400 410 420
480 490 500
pF1KB3 PAQRPMYTPIADTSGVPSIPQTHSPQHWEQPVYTQLTRP
:.:::.:: :.: : :: ::.::: :::::::: :.::
NP_008 PSQRPLYTAISDPS--PSGPQSHSPTHWEQPVYTTLSRP
430 440 450 460
>>NP_055402 (OMIM: 605923) transcription factor SOX-8 [H (446 aa)
initn: 1081 init1: 586 opt: 1178 Z-score: 484.6 bits: 99.0 E(85289): 3e-20
Smith-Waterman score: 1339; 48.8% identity (67.6% similar) in 500 aa overlap (19-509:16-446)
10 20 30 40 50
pF1KB3 MNLLDPFMKMTDEQEKGLSG-APSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPD
:: : : . ::: .. :: .::. . .:.:
NP_055 MLDMSEARSQPPCSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGVAVGGARGDP-
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 LKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSS--KNKPHVKRPMNAFMVWAQ
:. ...::.:::.:::::::::::.::::::: .:.. : ::::::::::::::::
NP_055 --AEAADERFPACIRDAVSQVLKGYDWSLVPMPVRGGGGGALKAKPHVKRPMNAFMVWAQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 AARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPR
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
NP_055 AARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 RRKSVKNGQAEAEEATEQ-THISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPT
::::.: :..... ..: : . .:..:: .:... : :.:.::..::::
NP_055 RRKSAKAGHSDSDSGAELGPHPGGGAVYKA--------EAGLGDGHHHGDHTGQTHGPPT
180 190 200 210 220
240 250 260 270 280 290
pF1KB3 PPTTPKTDVQPG--KADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEF
:::::::..: . : .:: ::: ..::: ::: .:::.::::.:......:::.::
NP_055 PPTTPKTELQQAGAKPELKLEGRRPVDSGRQN-IDFSNVDISELSSEVMGTMDAFDVHEF
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB3 DQYLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPP
::::: .: :. : ::. : :.: :.:. :: :. :: .: :
NP_055 DQYLPLGG-PA-PPEPGQA-YGGAY-------FHAGASPVWAHKS-APSA------SASP
290 300 310 320
360 370 380 390 400 410
pF1KB3 APQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHS
. .::.: :::::: ::.::..: . :
NP_055 TETGPPRP---------------------------------HIKTEQPSPGHYGDQPRGS
330 340 350
420 430 440 450 460 470
pF1KB3 PQQIAYSPFNLPHYSPSYP--PITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPA
:. . : . .:. : :.. :: :: : : .::::. : . :::. . .:
NP_055 PDYGSCS--GQSSATPAAPAGPFAGSQGDYGDLQ-ASSYYGAYPGYAPGLYQYPCFHSP-
360 370 380 390 400 410
480 490 500
pF1KB3 QRPMYTPIADTSGVPSIPQTHSP-QHWEQPVYTQLTRP
.::. .:. . :. ..: .::: .::.::::: ::::
NP_055 RRPYASPLLN--GL-ALPPAHSPTSHWDQPVYTTLTRP
420 430 440
>>NP_071899 (OMIM: 610928,613674) transcription factor S (414 aa)
initn: 513 init1: 429 opt: 534 Z-score: 235.7 bits: 52.9 E(85289): 2.2e-06
Smith-Waterman score: 534; 34.6% identity (54.4% similar) in 344 aa overlap (92-426:55-389)
70 80 90 100 110 120
pF1KB3 KESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARR
:. . : .:.. ...::::::::::. :.
NP_071 AGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERK
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB3 KLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKS
.::.: : :::::::: ::: :. :. .:::::::::::::::: .:::.:::.:::::.
NP_071 RLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB3 VKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPT-PPTT
:: . ..: . . :.: :: .. . . .. : ..: ::: ::
NP_071 VKRLK-RVEGGFLHGLAEPQAA--ALGPEGGRVAMDGLGLQFP--EQGFPAGPPLLPPHM
150 160 170 180 190
250 260 270 280 290
pF1KB3 PK--TDVQP-GKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQY
: : : : .: ::: .: .: : : . ... . .. . . . :
NP_071 GGHYRDCQSLGAPPL--DGYPLPTPDTSP-LDGVDPDPAFFAAPMPGDCPAAGTYSYAQV
200 210 220 230 240 250
300 310 320 330 340 350
pF1KB3 LPPNGHPGVPA--THGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPA
: : :: : .. . .: :: ::... . .: . : :
NP_071 SDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQ
260 270 280 290 300 310
360 370 380 390 400 410
pF1KB3 PQAPPQPQAAPPQ--QPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQH
: : : :: ::. ::. . : :.:.. .:: . :. . .
NP_071 HQHQHQHQHHPPGPGQPSPPPEALPCRDGTD-PSQPAELLGEVDRTEFEQYLHFVCKPEM
320 330 340 350 360 370
420 430 440 450 460 470
pF1KB3 S-PQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPA
. : : : :::
NP_071 GLPYQGHDSGVNLPDSHGAISSVVSDASSAVYYCNYPDV
380 390 400 410
>>NP_113627 (OMIM: 612202) transcription factor SOX-7 [H (388 aa)
initn: 479 init1: 383 opt: 461 Z-score: 207.8 bits: 47.6 E(85289): 7.8e-05
Smith-Waterman score: 461; 32.5% identity (54.8% similar) in 323 aa overlap (89-406:32-341)
60 70 80 90 100 110
pF1KB3 DLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQA
:: : :.. .. ...::::::::::.
NP_113 ASLLGAYPWPEGLECPALDAELSDGQSPPAVPRP---PGDKGSESRIRRPMNAFMVWAKD
10 20 30 40 50
120 130 140 150 160 170
pF1KB3 ARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRR
:..:: : : :::::::: ::: :. :. :.:::.:.::::::.:: .:.:.:::.:::
NP_113 ERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRR
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB3 RKSVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPP
.:..: ... . . .: . .:: : ....: .. ::.: . :
NP_113 KKQAKRLCKRVDPGFLLSSLSRDQ--NALPEKRSGSRGALGEKEDRGEYSPGTALPSLRG
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB3 TTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNI--ETFDVNEFDQ
. . : . : : :: .. .:. : . .:. : .
NP_113 CYHEGPAGGGGGGTPSSVDTYPYGLPTPP-EMSPLDVLEPEQTFFSSPCQEEHGHPRRIP
180 190 200 210 220 230
300 310 320 330 340 350
pF1KB3 YLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAP
.:: ::: : .. :. ..: : : : :: .: ::. : ::
NP_113 HLP--GHPYSPE-YAPSPLHCSHPLGSLA-LGQSPGVSMMSP--VPGCPPS-PAYYSPAT
240 250 260 270 280
360 370 380 390 400 410
pF1KB3 QAPPQPQ-AAPPQQPAAPPQQPQAHTLTTLSSEP--GQSQRTHIKTEQLSPSHYSEQQQH
: . . : : . ::..: .: ::. :. .:... .:.:
NP_113 YHPLHSNLQAHLGQLSPPPEHPGFDALDQLSQVELLGDMDRNEFDQYLNTPGHPDSATGA
290 300 310 320 330 340
420 430 440 450 460 470
pF1KB3 SPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPAQ
NP_113 MALSGHVPVSQVTPTGPTETSLISVLADATATYYNSYSVS
350 360 370 380
>>NP_060889 (OMIM: 137940,601618,607823) transcription f (384 aa)
initn: 459 init1: 391 opt: 430 Z-score: 195.9 bits: 45.4 E(85289): 0.00036
Smith-Waterman score: 468; 32.3% identity (52.9% similar) in 359 aa overlap (17-372:7-316)
10 20 30 40 50 60
pF1KB3 MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
: .. .: .: : .: :...::.. . : :
NP_060 MQRSPPGYGAQDDPPARRDCAWAP-GHGAAADTRG-------LAAGPAAL
10 20 30 40
70 80 90 100 110 120
pF1KB3 KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
. . : : . : . : : : . .. .. ...::::::::::. :
NP_060 AAPAAPASPPSPQRSPPRSPEPGR-YGLSPAG-RGERQAADESRIRRPMNAFMVWAKDER
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB3 RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
..::.: : :::: ::: ::: :. :: .:::::::::::::::: .:::.:::.:::.:
NP_060 KRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKK
110 120 130 140 150 160
190 200 210 220 230
pF1KB3 SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPG-EHSGQSQGPPTPPT
...... :. . . : : :. .. :. : : .: : :::
NP_060 QARKARRLEPGLLLPGLAPPQPPPEPFPAASG-SARAFRELPPLGAEFDGL--GLPTPER
170 180 190 200 210
240 250 260 270 280 290
pF1KB3 TPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLP
.: ..::.: . .: :: .: . . . . . :
NP_060 SPLDGLEPGEAAF------FP-----PPAAPEDCALRPFRAPYAPTELSRD---------
220 230 240 250
300 310 320 330 340 350
pF1KB3 PNGHPGVPATHGQVTYTGSYGISSTAATPAS--AGHVWMSKQQAPPPPPQQPPQAPPAPQ
:.: :.: ... : : ::. :: .... .: : : : .:: :.
NP_060 PGGCYGAPLAEALRT-----------APPAAPLAG-LYYGTLGTPGPYPG--PLSPP-PE
260 270 280 290 300
360 370 380 390 400 410
pF1KB3 APPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQ
::: ..: : :::
NP_060 APPL-ESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALAKLGPRAMSCPE
310 320 330 340 350 360
>>NP_009015 (OMIM: 604974) transcription factor SOX-21 [ (276 aa)
initn: 422 init1: 396 opt: 423 Z-score: 195.0 bits: 44.8 E(85289): 0.0004
Smith-Waterman score: 433; 33.0% identity (57.2% similar) in 285 aa overlap (99-364:2-271)
70 80 90 100 110 120
pF1KB3 FPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYP
:: ::::::::::::..: :::.:.. :
NP_009 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENP
10 20 30
130 140 150 160 170 180
pF1KB3 HLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRR-KSVKNGQA
..::.:.:: :: :.::.:::::::..::.:::..: :.::::::.:::. :.. . .
NP_009 KMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDK
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB3 EAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQG--PPTPPTTPKTDV
: . : .. . .:. : ..: : :.: . : : . ..:. .
NP_009 FAFPV-------PYGLGGVADAEHPALKAGA------GLHAGAGGGLVPESLLANPEKAA
100 110 120 130
250 260 270 280 290 300
pF1KB3 QPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPPN---G
. : : .:... . : : . . . ... .. :: :
NP_009 AAAAAAAARV--FFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLG
140 150 160 170 180 190
310 320 330 340 350
pF1KB3 HP--GVPATHGQVTYTGSY-----GISSTAATPASAGHVWMSKQQAPPPPPQQPPQAP--
.: :. : :: .. ... : . . .:.. :.. . .: : : ::: :
NP_009 YPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYIL
200 210 220 230 240 250
360 370 380 390 400
pF1KB3 -PA---PQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSE
:. :: : : :
NP_009 LPGMGKPQLDPYPAAYAAAL
260 270
>>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa)
initn: 448 init1: 379 opt: 408 Z-score: 190.2 bits: 43.6 E(85289): 0.00074
Smith-Waterman score: 408; 40.9% identity (66.1% similar) in 171 aa overlap (105-266:49-218)
80 90 100 110 120 130
pF1KB3 EAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAE
:::::::::::..: ::..:.: :..::.:
NP_008 ATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSE
20 30 40 50 60 70
140 150 160 170 180
pF1KB3 LSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRR-KSV-----KNGQAE
.:: :: :.::.:.:::::::::.:::..: .:.:::::.:::. :: . ::..
NP_008 ISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGR
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB3 AEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGP---PTPPTTPKTDV
.. :. .:. . . ..: .. :: . :.:. :.: . :..:
NP_008 GNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSY-GSSHCKLEAPSPCSLPQSDP
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB3 QPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPPNGHPG
. : . :: :. :
NP_008 RLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL
200 210 220 230
>>NP_004180 (OMIM: 604747) transcription factor SOX-14 [ (240 aa)
initn: 393 init1: 393 opt: 405 Z-score: 188.9 bits: 43.4 E(85289): 0.00088
Smith-Waterman score: 405; 33.6% identity (61.9% similar) in 244 aa overlap (99-333:2-236)
70 80 90 100 110 120
pF1KB3 FPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYP
:: . :.::::::::::... :::.:.. :
NP_004 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENP
10 20 30
130 140 150 160 170 180
pF1KB3 HLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAE
..::.:.:: :: :.::.:.::::...::.:::.:: :.::::::.:::. :: .
NP_004 KMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKP--KNLLKK
40 50 60 70 80
190 200 210 220 230 240
pF1KB3 AEEATEQTHISPNAIFKALQADSP-HSSSGMSEVHSPGEHSGQSQGPPTPPTTPKTDVQP
. . ... . .:: : : .:.:. . .: :.. : . : . .:
NP_004 DRYVFPLPYLGDTDPLKA--AGLPVGASDGL--LSAP-EKARAFLPPASAPYSLLDPAQF
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB3 GKADLKREGRPLPEG---GRQP---PIDFRDVDIGELSSDVISNIETFDVNEFDQYLPPN
... ... :. .:. : : . ... .: :: .. .: :. :
NP_004 SSSAIQKMGE-VPHTLATGALPYASTLGYQNGAFGSLSCPS-QHTHTHPSPTNPGYVVPC
150 160 170 180 190 200
310 320 330 340 350
pF1KB3 GHPGVPATHGQ--VTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQAP
. . :. : :.: :...:. : :..:
NP_004 NCTAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
210 220 230 240
360 370 380 390 400 410
pF1KB3 PQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIA
>>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa)
initn: 398 init1: 372 opt: 407 Z-score: 188.1 bits: 43.7 E(85289): 0.00098
Smith-Waterman score: 407; 29.6% identity (58.8% similar) in 294 aa overlap (97-380:32-316)
70 80 90 100 110 120
pF1KB3 DKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKP-HVKRPMNAFMVWAQAARRKLAD
:..::.: .:::::::::::... :::.:.
NP_003 YNMMETELKPPGPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQ
10 20 30 40 50 60
130 140 150 160 170 180
pF1KB3 QYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNG
. :..::.:.:: :: :.::.:.:::::..::.:::. : :.::::::.:::. .:.
NP_003 ENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK--TKTL
70 80 90 100 110
190 200 210 220 230 240
pF1KB3 QAEAEEATEQTHISP--NAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTTPKT
. . . . ..: :.. ... . . ... ... : .. .: :.: .
NP_003 MKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNG--SYSMMQDQ
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB3 DVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPPNGH
: . :. .: .... :. ::. . .: . :. ... .:
NP_003 LGYPQHPGLNAHG-----AAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGT
180 190 200 210 220 230
310 320 330 340 350
pF1KB3 PGVP-ATHGQVTYT---GSYGI---SSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAP
::. .. :.:. . .: . :: . .: .:: . .. : : ::
NP_003 PGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRL
240 250 260 270 280 290
360 370 380 390 400 410
pF1KB3 QAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQ
. . :..: : : .:
NP_003 HMSQHYQSGPVPGTAINGTLPLSHM
300 310
509 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:11:32 2016 done: Thu Nov 3 14:11:33 2016
Total Scan time: 8.980 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]