Result of FASTA (omim) for
pF1KB3860
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3860, 348 aa
1>>>pF1KB3860 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3237+/-0.000409; mu= 1.2746+/- 0.025
mean_var=462.5744+/-98.382, 0's: 0 Z-trim(123.8): 1436 B-trim: 0 in 0/56
Lambda= 0.059633
statistics sampled from 42404 (44337) to 42404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.52), width: 16
Scan time: 9.690
The best scores are: opt bits E(85289)
NP_112599 (OMIM: 605858) transcriptional repressor ( 348) 2401 220.4 4.6e-57
NP_003059 (OMIM: 172800,602150,608890) zinc finger ( 268) 599 65.2 1.8e-10
NP_840101 (OMIM: 612741) zinc finger protein SNAI3 ( 292) 581 63.7 5.7e-10
NP_005976 (OMIM: 604238) zinc finger protein SNAI1 ( 264) 512 57.7 3.3e-08
NP_003566 (OMIM: 603397) zinc finger protein 282 i ( 671) 506 57.8 7.9e-08
XP_006716214 (OMIM: 603397) PREDICTED: zinc finger ( 672) 506 57.8 7.9e-08
NP_004211 (OMIM: 608387) zinc finger protein 213 [ ( 459) 424 50.5 8.5e-06
NP_001128127 (OMIM: 608387) zinc finger protein 21 ( 459) 424 50.5 8.5e-06
NP_001276331 (OMIM: 604077) zinc finger protein 13 ( 616) 409 49.4 2.4e-05
XP_016882731 (OMIM: 604077) PREDICTED: zinc finger ( 621) 409 49.4 2.5e-05
XP_016882730 (OMIM: 604077) PREDICTED: zinc finger ( 628) 409 49.4 2.5e-05
XP_016882729 (OMIM: 604077) PREDICTED: zinc finger ( 658) 409 49.5 2.5e-05
NP_001276330 (OMIM: 604077) zinc finger protein 13 ( 658) 409 49.5 2.5e-05
XP_005259268 (OMIM: 604077) PREDICTED: zinc finger ( 670) 409 49.5 2.6e-05
XP_006723426 (OMIM: 604077) PREDICTED: zinc finger ( 670) 409 49.5 2.6e-05
XP_006723425 (OMIM: 604077) PREDICTED: zinc finger ( 670) 409 49.5 2.6e-05
NP_003427 (OMIM: 604077) zinc finger protein 135 i ( 670) 409 49.5 2.6e-05
NP_009065 (OMIM: 604077) zinc finger protein 135 i ( 682) 409 49.5 2.6e-05
XP_011526674 (OMIM: 611811) PREDICTED: zinc finger ( 434) 401 48.5 3.2e-05
XP_011526673 (OMIM: 611811) PREDICTED: zinc finger ( 476) 401 48.6 3.4e-05
XP_016882860 (OMIM: 611811) PREDICTED: zinc finger ( 519) 401 48.6 3.6e-05
XP_016882858 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_011526670 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_011526667 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_011526668 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_011526671 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_011526665 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_011526669 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_005260155 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_016882859 (OMIM: 611811) PREDICTED: zinc finger ( 556) 401 48.7 3.7e-05
XP_016882857 (OMIM: 611811) PREDICTED: zinc finger ( 578) 401 48.7 3.8e-05
XP_011526664 (OMIM: 611811) PREDICTED: zinc finger ( 665) 401 48.8 4.1e-05
NP_115809 (OMIM: 611811) zinc finger protein 333 i ( 665) 401 48.8 4.1e-05
XP_016882856 (OMIM: 611811) PREDICTED: zinc finger ( 665) 401 48.8 4.1e-05
XP_016881869 (OMIM: 613904) PREDICTED: zinc finger ( 527) 395 48.1 5.2e-05
XP_016881871 (OMIM: 613904) PREDICTED: zinc finger ( 527) 395 48.1 5.2e-05
NP_001317411 (OMIM: 613904) zinc finger protein 56 ( 527) 395 48.1 5.2e-05
XP_016881868 (OMIM: 613904) PREDICTED: zinc finger ( 527) 395 48.1 5.2e-05
XP_011525924 (OMIM: 606697) PREDICTED: zinc finger ( 639) 396 48.3 5.4e-05
NP_001278533 (OMIM: 194500) zinc finger protein 2 ( 345) 390 47.4 5.5e-05
NP_001273984 (OMIM: 601260) zinc finger protein wi ( 350) 390 47.4 5.5e-05
NP_005806 (OMIM: 606697) zinc finger protein 443 [ ( 671) 396 48.3 5.6e-05
XP_016881629 (OMIM: 606697) PREDICTED: zinc finger ( 673) 396 48.3 5.6e-05
XP_016881628 (OMIM: 606697) PREDICTED: zinc finger ( 685) 396 48.4 5.6e-05
XP_011525925 (OMIM: 606697) PREDICTED: zinc finger ( 718) 396 48.4 5.8e-05
XP_016881867 (OMIM: 613904) PREDICTED: zinc finger ( 650) 395 48.2 5.8e-05
NP_001269327 (OMIM: 194500) zinc finger protein 2 ( 387) 390 47.5 5.9e-05
XP_016881865 (OMIM: 613904) PREDICTED: zinc finger ( 686) 395 48.3 6e-05
NP_689697 (OMIM: 613904) zinc finger protein 569 i ( 686) 395 48.3 6e-05
XP_016881866 (OMIM: 613904) PREDICTED: zinc finger ( 686) 395 48.3 6e-05
>>NP_112599 (OMIM: 605858) transcriptional repressor scr (348 aa)
initn: 2401 init1: 2401 opt: 2401 Z-score: 1145.5 bits: 220.4 E(85289): 4.6e-57
Smith-Waterman score: 2401; 99.7% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KB3 MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 KGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 KGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_112 DGRSRRKASNAGAAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 LLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 LLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSA
250 260 270 280 290 300
310 320 330 340
pF1KB3 FKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 FKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
310 320 330 340
>>NP_003059 (OMIM: 172800,602150,608890) zinc finger pro (268 aa)
initn: 794 init1: 575 opt: 599 Z-score: 308.8 bits: 65.2 E(85289): 1.8e-10
Smith-Waterman score: 599; 58.0% identity (78.3% similar) in 138 aa overlap (190-327:127-264)
160 170 180 190 200 210
pF1KB3 LGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQ
. :. :.:::.: :.:..::: : . .:.
NP_003 KDHSGSESPISDEEERLQSKLSDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSR
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB3 LARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCA
. : : : :::. :. ::. :: : : .::::::::::::::.:.:::::::.:
NP_003 KSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCP
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB3 HCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPA
::..:::::::::::.:::: :..::: :.:.:. : :.:: ::.:
NP_003 HCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
220 230 240 250 260
340
pF1KB3 PPQLSPVQA
>>NP_840101 (OMIM: 612741) zinc finger protein SNAI3 [Ho (292 aa)
initn: 743 init1: 528 opt: 581 Z-score: 300.0 bits: 63.7 E(85289): 5.7e-10
Smith-Waterman score: 581; 49.7% identity (68.7% similar) in 163 aa overlap (168-330:129-291)
140 150 160 170 180 190
pF1KB3 STASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECG
: : :: . .. : : : .:
NP_840 RAAIVPLKDSLNHLNLPPLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCH
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB3 KTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAF
: : : ..:.::.: : :. . : : : :.:. :. ::. :: : : .:::::
NP_840 KPYHTLAGLARHRQLHCHLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAF
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB3 SRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKS
:::::::::.:.::::::..:.::..:::::::::::.:::: :...:.:: :.:. :
NP_840 SRPWLLQGHVRTHTGEKPYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMS
220 230 240 250 260 270
320 330 340
pF1KB3 YLNKHYESACFKGGAGGPAAPAPPQLSPVQA
: .: ::.: :
NP_840 LLARHEESGCCPGP
280 290
>>NP_005976 (OMIM: 604238) zinc finger protein SNAI1 [Ho (264 aa)
initn: 704 init1: 456 opt: 512 Z-score: 268.4 bits: 57.7 E(85289): 3.3e-08
Smith-Waterman score: 512; 57.9% identity (80.7% similar) in 114 aa overlap (214-327:146-259)
190 200 210 220 230 240
pF1KB3 AAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLT
..:... : : :.: :.:. :. ::. .
NP_005 TSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRS
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB3 HDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKH
: : ::.::::::::::::::.:.:::::::.: ::..:::::::::::.:::: :.
NP_005 HTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKK
180 190 200 210 220 230
310 320 330 340
pF1KB3 FQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
.::. : ..:. : :.:: ::.:
NP_005 YQCQACARTFSRMSLLHKHQESGCSGCPR
240 250 260
>>NP_003566 (OMIM: 603397) zinc finger protein 282 isofo (671 aa)
initn: 448 init1: 277 opt: 506 Z-score: 261.6 bits: 57.8 E(85289): 7.9e-08
Smith-Waterman score: 506; 33.0% identity (55.6% similar) in 306 aa overlap (46-345:378-666)
20 30 40 50 60 70
pF1KB3 SSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALLKGPSPEPMYAAAVRG
:: . .:: : .: .::: .. :..
NP_003 DIPTDPNSESLISAHDILSWIKQEEQPYPWGPRDSMDG--ELGLDSGPSDSLLM---VKN
350 360 370 380 390 400
80 90 100 110 120 130
pF1KB3 ELGPAAAGSAPPPTP-RPELATAAGGYINGDAAVSE--GYAADAFFITDGRSRRKASNAG
:: : : : .:.: . ::.: : . .. :: . .. :
NP_003 P-PPAPPQPQPQPQPPQPQLQSQPQPQSLPPIAVAENPGGPPSRGLLDDGF-QVLPGERG
410 420 430 440 450 460
140 150 160 170 180 190
pF1KB3 SAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGR-H
:. :: .. .. : . ::::.:: :.: :: :. .: : . :: .. .
NP_003 SGEAPPGGDRSTGGGGGDGGGGGGGAEAGTGAGGGCGSCCPGGL--RRSLLLHGARSKPY
470 480 490 500 510
200 210 220 230 240
pF1KB3 ACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTH--DLRHK
.: ::::.... ..: : ::: .. .: : : . .. : .:: . .:
NP_003 SCPECGKSFGVRKSLIIH---HRSHTKERPYECAECEKSFNCHSGLIRHQMTHRGERPYK
520 530 540 550 560 570
250 260 270 280 290 300
pF1KB3 CGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRC
:. : :..:: ::.:.: ::::.:: :: :::.: ..:: :.. :.. . . : .:
NP_003 CSECEKTYSRKEHLQNHQRLHTGERPFQCALCGKSFIRKQNLLKHQRIHTGERPYTCGEC
580 590 600 610 620 630
310 320 330 340
pF1KB3 KKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
::: : :. : .. .:::. :: :: :
NP_003 GKSFRYKESLKDH-----LRVHSGGPGPGAPRQLPPPPERD
640 650 660 670
>>XP_006716214 (OMIM: 603397) PREDICTED: zinc finger pro (672 aa)
initn: 448 init1: 277 opt: 506 Z-score: 261.6 bits: 57.8 E(85289): 7.9e-08
Smith-Waterman score: 506; 33.0% identity (55.6% similar) in 306 aa overlap (46-345:379-667)
20 30 40 50 60 70
pF1KB3 SSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALLKGPSPEPMYAAAVRG
:: . .:: : .: .::: .. :..
XP_006 DIPTDPNSESLISAHDILSWIKQEEQPYPWGPRDSMDG--ELGLDSGPSDSLLM---VKN
350 360 370 380 390 400
80 90 100 110 120 130
pF1KB3 ELGPAAAGSAPPPTP-RPELATAAGGYINGDAAVSE--GYAADAFFITDGRSRRKASNAG
:: : : : .:.: . ::.: : . .. :: . .. :
XP_006 P-PPAPPQPQPQPQPPQPQLQSQPQPQSLPPIAVAENPGGPPSRGLLDDGF-QVLPGERG
410 420 430 440 450 460
140 150 160 170 180 190
pF1KB3 SAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGR-H
:. :: .. .. : . ::::.:: :.: :: :. .: : . :: .. .
XP_006 SGEAPPGGDRSTGGGGGDGGGGGGGAEAGTGAGGGCGSCCPGGL--RRSLLLHGARSKPY
470 480 490 500 510
200 210 220 230 240
pF1KB3 ACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTH--DLRHK
.: ::::.... ..: : ::: .. .: : : . .. : .:: . .:
XP_006 SCPECGKSFGVRKSLIIH---HRSHTKERPYECAECEKSFNCHSGLIRHQMTHRGERPYK
520 530 540 550 560 570
250 260 270 280 290 300
pF1KB3 CGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRC
:. : :..:: ::.:.: ::::.:: :: :::.: ..:: :.. :.. . . : .:
XP_006 CSECEKTYSRKEHLQNHQRLHTGERPFQCALCGKSFIRKQNLLKHQRIHTGERPYTCGEC
580 590 600 610 620 630
310 320 330 340
pF1KB3 KKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA
::: : :. : .. .:::. :: :: :
XP_006 GKSFRYKESLKDH-----LRVHSGGPGPGAPRQLPPPPERD
640 650 660 670
>>NP_004211 (OMIM: 608387) zinc finger protein 213 [Homo (459 aa)
initn: 615 init1: 258 opt: 424 Z-score: 225.1 bits: 50.5 E(85289): 8.5e-06
Smith-Waterman score: 424; 30.8% identity (52.4% similar) in 328 aa overlap (7-322:128-447)
10 20 30
pF1KB3 MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLH
:: . :. : : ::. . : :
NP_004 PGEIQGWVREQHPGSGEEAVALVEDLQKQPVKAWRQDVPSEEAEPEAAGRGSQATGPPPT
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB3 DKGYLSDYVGPSSVYDGDAEA-ALLKGPSP-EPMYAAAVRGELGPAAAGSAPPPTPRPEL
. : :. .. .:. :::: : : . : : ::.: :. : : :
NP_004 VGARRRPSV-PQEQHSHSAQPPALLKEGRPGETTDTCFVSGVHGPVALGDIPFYFSREEW
160 170 180 190 200 210
100 110 120 130 140
pF1KB3 AT--AAGGYINGDAAVSEGYAADAFFITDGRSRRKASNA------GSAAAPSTASAAAPD
.: : . : .. . : :.:... . :.... :.: . .
NP_004 GTLDPAQRDLFWDIKRENSRNTTLGFGLKGQSEKSLLQEMVPVVPGQTGSDVTVSWSPEE
220 230 240 250 260 270
150 160 170 180 190 200
pF1KB3 GDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNL
..: . . .:: :.: : :. : : : :.::.::: . .:.:
NP_004 AEAWESENRPRAALGPVVGARRGR---PPTRRRQFRDLA-AEKPHSCGQCGKRFRWGSDL
280 290 300 310 320 330
210 220 230 240 250 260
pF1KB3 SRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRH--KCGVCGKAFSRPWLLQ
.::..:: . . ..:: : : . : .. : .: .. .:. :::.::: :
NP_004 ARHQRTHTG---EKPHKCPECDKSFRSSSDLVRHQGVHTGEKPFSCSECGKSFSRSAYLA
340 350 360 370 380
270 280 290 300 310 320
pF1KB3 GHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYE
:.: :::::::::. :::.:. :: : : ..:.. . : : .: ::: ...: :
NP_004 DHQRIHTGEKPFGCSDCGKSFSLRSYLLDHRRVHTGERPFGCGECDKSFKQRAHLIAHQS
390 400 410 420 430 440
330 340
pF1KB3 SACFKGGAGGPAAPAPPQLSPVQA
NP_004 LHAKMAQPVG
450
>>NP_001128127 (OMIM: 608387) zinc finger protein 213 [H (459 aa)
initn: 615 init1: 258 opt: 424 Z-score: 225.1 bits: 50.5 E(85289): 8.5e-06
Smith-Waterman score: 424; 30.8% identity (52.4% similar) in 328 aa overlap (7-322:128-447)
10 20 30
pF1KB3 MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLH
:: . :. : : ::. . : :
NP_001 PGEIQGWVREQHPGSGEEAVALVEDLQKQPVKAWRQDVPSEEAEPEAAGRGSQATGPPPT
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB3 DKGYLSDYVGPSSVYDGDAEA-ALLKGPSP-EPMYAAAVRGELGPAAAGSAPPPTPRPEL
. : :. .. .:. :::: : : . : : ::.: :. : : :
NP_001 VGARRRPSV-PQEQHSHSAQPPALLKEGRPGETTDTCFVSGVHGPVALGDIPFYFSREEW
160 170 180 190 200 210
100 110 120 130 140
pF1KB3 AT--AAGGYINGDAAVSEGYAADAFFITDGRSRRKASNA------GSAAAPSTASAAAPD
.: : . : .. . : :.:... . :.... :.: . .
NP_001 GTLDPAQRDLFWDIKRENSRNTTLGFGLKGQSEKSLLQEMVPVVPGQTGSDVTVSWSPEE
220 230 240 250 260 270
150 160 170 180 190 200
pF1KB3 GDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNL
..: . . .:: :.: : :. : : : :.::.::: . .:.:
NP_001 AEAWESENRPRAALGPVVGARRGR---PPTRRRQFRDLA-AEKPHSCGQCGKRFRWGSDL
280 290 300 310 320 330
210 220 230 240 250 260
pF1KB3 SRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRH--KCGVCGKAFSRPWLLQ
.::..:: . . ..:: : : . : .. : .: .. .:. :::.::: :
NP_001 ARHQRTHTG---EKPHKCPECDKSFRSSSDLVRHQGVHTGEKPFSCSECGKSFSRSAYLA
340 350 360 370 380
270 280 290 300 310 320
pF1KB3 GHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYE
:.: :::::::::. :::.:. :: : : ..:.. . : : .: ::: ...: :
NP_001 DHQRIHTGEKPFGCSDCGKSFSLRSYLLDHRRVHTGERPFGCGECDKSFKQRAHLIAHQS
390 400 410 420 430 440
330 340
pF1KB3 SACFKGGAGGPAAPAPPQLSPVQA
NP_001 LHAKMAQPVG
450
>>NP_001276331 (OMIM: 604077) zinc finger protein 135 is (616 aa)
initn: 1318 init1: 280 opt: 409 Z-score: 216.8 bits: 49.4 E(85289): 2.4e-05
Smith-Waterman score: 409; 40.3% identity (70.9% similar) in 134 aa overlap (191-322:312-442)
170 180 190 200 210 220
pF1KB3 GSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQL
. ::::::... ::.:..:.. : . .
NP_001 KPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTG---EK
290 300 310 320 330
230 240 250 260 270
pF1KB3 ARRCPTCGKVYVSMPAMAMHLLTH--DLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: :::..... . .: :: . ..:: ::::::. :: : : ::::::.::
NP_001 PYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEKPYGC
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB3 AHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAP
.:::.:. :.: : .::.. : ..:..: :.: ...:..:
NP_001 NECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCG
400 410 420 430 440 450
340
pF1KB3 APPQLSPVQA
NP_001 KAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFS
460 470 480 490 500 510
>--
initn: 980 init1: 250 opt: 367 Z-score: 197.3 bits: 45.8 E(85289): 0.0003
Smith-Waterman score: 367; 35.8% identity (68.7% similar) in 134 aa overlap (191-322:452-582)
170 180 190 200 210 220
pF1KB3 GSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQL
. :..:::... ::.:..:.. : . .
NP_001 KPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTG---EK
430 440 450 460 470
230 240 250 260 270
pF1KB3 ARRCPTCGKVYVSMPAMAMHLLTH--DLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: ::... .. . .: : . ..:. ::.:::. :: :.: :: :::.::
NP_001 PYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLIEHQRIHTKEKPYGC
480 490 500 510 520 530
280 290 300 310 320 330
pF1KB3 AHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAP
.:::.:. :.: : .::.. : ..:. : ::: ...:..:
NP_001 NECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYACRDCG
540 550 560 570 580 590
340
pF1KB3 APPQLSPVQA
NP_001 KAFTHSSSLTKHQRTHTG
600 610
>>XP_016882731 (OMIM: 604077) PREDICTED: zinc finger pro (621 aa)
initn: 1318 init1: 280 opt: 409 Z-score: 216.8 bits: 49.4 E(85289): 2.5e-05
Smith-Waterman score: 409; 40.3% identity (70.9% similar) in 134 aa overlap (191-322:317-447)
170 180 190 200 210 220
pF1KB3 GSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQL
. ::::::... ::.:..:.. : . .
XP_016 KPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTG---EK
290 300 310 320 330 340
230 240 250 260 270
pF1KB3 ARRCPTCGKVYVSMPAMAMHLLTH--DLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: :::..... . .: :: . ..:: ::::::. :: : : ::::::.::
XP_016 PYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEKPYGC
350 360 370 380 390 400
280 290 300 310 320 330
pF1KB3 AHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAP
.:::.:. :.: : .::.. : ..:..: :.: ...:..:
XP_016 NECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCG
410 420 430 440 450 460
340
pF1KB3 APPQLSPVQA
XP_016 KAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFS
470 480 490 500 510 520
>--
initn: 980 init1: 250 opt: 367 Z-score: 197.3 bits: 45.8 E(85289): 0.0003
Smith-Waterman score: 367; 35.8% identity (68.7% similar) in 134 aa overlap (191-322:457-587)
170 180 190 200 210 220
pF1KB3 GSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQL
. :..:::... ::.:..:.. : . .
XP_016 KPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTG---EK
430 440 450 460 470 480
230 240 250 260 270
pF1KB3 ARRCPTCGKVYVSMPAMAMHLLTH--DLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGC
.: ::... .. . .: : . ..:. ::.:::. :: :.: :: :::.::
XP_016 PYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLIEHQRIHTKEKPYGC
490 500 510 520 530 540
280 290 300 310 320 330
pF1KB3 AHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAP
.:::.:. :.: : .::.. : ..:. : ::: ...:..:
XP_016 NECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYACRDCG
550 560 570 580 590 600
340
pF1KB3 APPQLSPVQA
XP_016 KAFTHSSSLTKHQRTHTG
610 620
348 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:04:46 2016 done: Thu Nov 3 14:04:47 2016
Total Scan time: 9.690 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]